Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002952.1

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Reverse (-)

5736 .. 13491

Gene Structure 7756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002952.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3540 bp

atggcgacgccgttaacggtggacggaggcggagggctggcggtgctggcaagctccgtcaacaaagtcgattctccgagtaaggggcgcttgacgagctcgtcgtcgtcgtcggaggaggagaggtcgccgattctgatattcttgttctttcacaaggcaattcggaaggagctcgatgcgcttcaccgattggccatggctttcgccagcggaaagcagacggatatcaggcccttgctggagcggtaccatttcttgagatcgatttacaagcaccactccaatgccgaagacgaggtaatctttccagcgcttgatatacgtgtgaagaatgtagcacaaacatactcgcttgaacacaagggcgaaaccaatctttttgatcatctatttgaactgctaagttctaatgcacaaagtgatgacagtttcacaagggagttagcatcttgtacaggagccttacaaacatcagttagccaacacatggcaaaggaggaggaacaggtcttacccttgctgattgagaagttttcagttgaggagcaggcatctctagtctggcagtttctatgcagtattcctgtgaatatgatggccgagtttcttccgtggctttcatcatcagtttcacctgatgaatatcaggatttgcggaaatgcttatgcaagattgttccagaggagaagcttcttcaacaagtcattttcacctggatggaaggtagaacgagcaataatgtggttaaaagttatcatgattctcctcagttccaatgttgcgtggaatctggtgctagcacatcaagtctacatatagagaagataaattgtccatgtgagtgtaggactgggaaaaggaagtatttagagtcaagtactgatgtttctgataccactgggggccatccaattaatgaaatactgctttggcataatgccattaaaaaggagttatttgagatagccgaggaggctaggaagatacaactgtctggagattttactaatctatcagctttcaatgagaggttgcaatttgttgctgaagtttgcatttttcacagtattgccgaggacaaggtcatatttcctgcagtagatggaaagatatcctttttccaagagcatgctgaagaagaaagtcagttcaatgagttcaggtgtctgattgaaaacattcaaagtgcaggagctatctctacttcagctgatttttatgcagagctgtgctcacacgctgatcaaataatagaaactatacagaagcacttcagcaatgaagaagtgcaggttcttccacttgctcgaaagcacttcagcttcaaaagacagcgggaactattgtaccagagtttatgcatgatgcccttgaaattgatcgagcgtgtttttccatggctagtcagattgttgactgaagatgaaatgaagaatattctcaaaaacatgcagttagcagctccagtccctgattcagctctggtaacacttttttctggatgggcatgcaaggctcgtaatcagggttcatgcctgtcttcaagtgaacttggttgctgtcctgttaaaagttttactgatattgaagaagattttgttcgacccgcatgtgcttgtgcttctggattgtctgctagagagagactggtatcagctaaagtaaataatgtgaaaaggctggtcaaacgaaatgtttcagtgccgcgcaaaaacagtgatacccctgatcaatgttgtactgatcaatcttgccgtgtcccgggtttaggagtaaacaacactaatcttggatcgagttctcaattcgtggccaagtctttgcggtccttgtctttcagctcttctgccccatctcttaattccagtctttttgcctgggaaacagataattcttcctttgatattggttgtggagaacgacctattgatactatttttaagtttcataaagccattcgcaaagacttggagtatttagatattgaatctggaaagcttggtaatggtgatgaagccacacttcggcagtttataggaagattccgtttgctatggggcttatacagagcacacagtaatgctgaggatgatatagtgtttcctgcattggaatccaaagaggcacttcataatgtgagccattcatacacactggaccataaacaggaggaaaaattattcgaagacatctctcgtgttctttctgaactttctgaccttcatgaaagcatggaaaagactcatatggatgaggatttagcaggaagtagcatgagtttttctgccgcaaatggtgtgaactatactaggaattacaatgagctggctacaaagcttcaagggatgtgcaagtctataaaagtgacactagatcatcacattttcagggaagaacttgagttgtggccattatttggcaaacacttcactgttgaggagcaagacaaaatagtcgggcggattattgggaccacgggtgctgaggtgctccaatcaatgttaccttgggtaacttctgcacttacccaggatgaacagaataaattgatggacacatggaagcaagcaactaaaaatactatgtttaatgagtggcttaatgaatgcatgaaaggatcttcagaatcaacttcacgaactgagacaagggaaagtaacatttctcaaaaaggtgttgaatttcaagaaagcttggaccagacggaccagatgttcaagcctggttggaaggacatattccgtatgaatcaaaatgaactagagtcagagatcagaaaggtttatcgtgatgcgactcttgatccaaggagaaaggcatatcttgtgcaaaatcttatgactagccgctggatagctactcagcagaagttacctcaagcaacaggtggagagtcttctaatggtgaagatgtatttggacgctcaccttcataccgtgatgtggagaaaaaagtatttgggtgtgaacactacaaaagaaactgtaaactccgagctgcttgttgtggcaagttatttgcatgtagattttgccatgacaatgtgagcgaccattcaatggataggaaagcaacatcggaaattatgtgcatgcgctgcctaaaaattcagccagttgggcccatatgtactacaccttcatgcaatgaactatctatggcaaagtattattgcaatatctgcaaattttttgatgatgaaaggactgtatatcattgcccgttttgcaatttatgccgccttgggaaggtgcaacagttagggctttgccatgtggccattacatgcattcagcttgctttcaggcctacacttgcagtcactatacttgcccaatttgtagcaagtctctgggagatatggcggtttactttggcatgcttgatgccttattggctgctgagcagcttccagaggaataccagaaccgtcggcaggacatcctttgtaatgattgtgatcgaaaggctacctcacgctttcactggttatatcacaagtgcggtaactgtggatcatacaatacccgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1179

Amino Acids

133.44

Weight (kDa)

6.02

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	100, 2456
Acc36I	ACCTGC	1 cut(s)	1285
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	3 cut(s)	490, 2420, 3064
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	814
AccII	CGCG	1 cut(s)	1711
AclWI	GGATC	4 cut(s)	1804, 2629, 2801, 3528
AcoI	YGGCCR	5 cut(s)	195, 600, 1815, 2411, 3282
AcsI	RAATTY	3 cut(s)	2684, 3111, 3191
AcuI	CTGAAG	7 cut(s)	1071, 1158, 1194, 1261, 1306, 1443, 2610
AcyI	GRCGYC	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	6 cut(s)	251, 457, 883, 1352, 1744, 3136
AfeI	AGCGCT	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	325
AjnI	CCWGG	4 cut(s)	716, 1880, 2532, 2725
AjuI	GAANNNNNNNTTGG	2 cut(s)	2904, 2936
AloI	GAACNNNNNNTCC	2 cut(s)	2702, 2734
Alw21I	GWGCWC	5 cut(s)	101, 177, 1238, 2077, 2496
Alw26I	GTCTC	3 cut(s)	1642, 2642, 3359
AlwI	GGATC	4 cut(s)	1804, 2629, 2801, 3528
AlwNI	CAGNNNCTG	1 cut(s)	1475
Ama87I	CYCGRG	2 cut(s)	1765, 3533
Aor51HI	AGCGCT	1 cut(s)	315
AoxI	GGCC	9 cut(s)	195, 233, 600, 907, 1815, 2411, 3125, 3282, 3311
ApaI	GGGCCC	1 cut(s)	3129
ApeKI	GCWGC	5 cut(s)	1463, 3002, 3102, 3403, 3411
ApoI	RAATTY	3 cut(s)	2684, 3111, 3191
AseI	ATTAAT	1 cut(s)	918
Asp700I	GAANNNNTTC	3 cut(s)	1182, 1274, 1699
Asp718I	GGTACC	1 cut(s)	249
AspLEI	GCGC	5 cut(s)	90, 184, 316, 1713, 3102
AspS9I	GGNCC	9 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710, 3125, 3126
AsuC2I	CCSGG	4 cut(s)	1766, 1767, 3534, 3535
AsuHPI	GGTGA	6 cut(s)	179, 627, 706, 2024, 2921, 2922
AsuII	TTCGAA	1 cut(s)	2187
AsuNHI	GCTAGC	1 cut(s)	800
AvaI	CYCGRG	2 cut(s)	1765, 3533
AvaII	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
BaeGI	GKGCMC	1 cut(s)	3129
BaeI	ACNNNNGTAYC	4 cut(s)	980, 1013, 1334, 1367
BalI	TGGCCA	4 cut(s)	197, 1817, 2413, 3284
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	3 cut(s)	101, 177, 3129
BarI	GAAGNNNNNNTAC	2 cut(s)	3127, 3159
BauI	CACGAG	1 cut(s)	2199
BbsI	GAAGAC	4 cut(s)	300, 1536, 2196, 2892
Bbv12I	GWGCWC	5 cut(s)	101, 177, 1238, 2077, 2496
BbvCI	CCTCAGC	2 cut(s)	2088, 2487
BbvI	GCAGC	5 cut(s)	1475, 2989, 3089, 3390, 3423
BccI	CCATC	7 cut(s)	592, 715, 918, 1100, 1500, 1864, 2548
BceAI	ACGGC	1 cut(s)	1743
BciT130I	CCWGG	4 cut(s)	718, 1882, 2534, 2727
BclI	TGATCA	4 cut(s)	385, 1246, 1732, 1747
BcnI	CCSGG	4 cut(s)	1766, 1767, 3534, 3535
BcoDI	GTCTC	3 cut(s)	1642, 2642, 3359
BfaI	CTAG	9 cut(s)	560, 801, 981, 1406, 1641, 2313, 2375, 2765, 2847
BfmI	CTRYAG	1 cut(s)	1098
BfoI	RGCGCY	2 cut(s)	91, 317
BfuAI	ACCTGC	1 cut(s)	1285
BglI	GCCNNNNNGGC	3 cut(s)	977, 3124, 3400
BisI	GCNGC	9 cut(s)	1464, 1709, 2292, 2851, 3003, 3103, 3244, 3404, 3412
BlpI	GCTNAGC	1 cut(s)	3407
BlsI	GCNGC	9 cut(s)	1465, 1710, 2293, 2852, 3004, 3104, 3245, 3405, 3413
BmcAI	AGTACT	1 cut(s)	883
Bme1390I	CCNGG	8 cut(s)	718, 1766, 1767, 1882, 2534, 2727, 3534, 3535
Bme18I	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
BmeT110I	CYCGRG	2 cut(s)	1765, 3533
BmgT120I	GGNCC	9 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710, 3125, 3126
BmiI	GGNNCC	5 cut(s)	251, 463, 908, 2476, 3127
BmrFI	CCNGG	8 cut(s)	718, 1766, 1767, 1882, 2534, 2727, 3534, 3535
BmrI	ACTGGG	2 cut(s)	864, 912
BmsI	GCATC	6 cut(s)	169, 458, 563, 1359, 2785, 3381
BmtI	GCTAGC	1 cut(s)	804
BmuI	ACTGGG	2 cut(s)	864, 912
BpiI	GAAGAC	4 cut(s)	300, 1536, 2196, 2892
BplI	GAGNNNNNCTC	2 cut(s)	1220, 1252
BpmI	CTGGAG	3 cut(s)	263, 1020, 1452
Bpu10I	CCTNAGC	2 cut(s)	2088, 2487
Bpu1102I	GCTNAGC	1 cut(s)	3407
Bpu14I	TTCGAA	1 cut(s)	2187
BpuEI	CTTGAG	3 cut(s)	280, 2423, 2865
BpuMI	CCSGG	4 cut(s)	1766, 1767, 3534, 3535
Bsa29I	ATCGAT	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	326
BsaBI	GATNNNNATC	2 cut(s)	645, 3464
BsaHI	GRCGYC	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse1I	ACTGG	8 cut(s)	859, 907, 1469, 1656, 1869, 2163, 3119, 3496
Bse3DI	GCAATG	3 cut(s)	1288, 3157, 3220
Bse8I	GATNNNNATC	2 cut(s)	645, 3464
BseBI	CCWGG	4 cut(s)	718, 1882, 2534, 2727
BseCI	ATCGAT	1 cut(s)	266
BseGI	GGATG	8 cut(s)	726, 910, 1511, 2098, 2260, 2355, 2542, 3446
BseJI	GATNNNNATC	2 cut(s)	645, 3464
BseMI	GCAATG	3 cut(s)	1288, 3157, 3220
BseMII	CTCAG	6 cut(s)	785, 2079, 2478, 2637, 2879, 3398
BseNI	ACTGG	8 cut(s)	859, 907, 1469, 1656, 1869, 2163, 3119, 3496
BseRI	GAGGAG	8 cut(s)	131, 134, 515, 560, 701, 759, 989, 2456
BseSI	GKGCMC	1 cut(s)	3129
BseXI	GCAGC	5 cut(s)	1475, 2989, 3089, 3390, 3423
BsgI	GTGCAG	3 cut(s)	1212, 1313, 2508
Bsh1236I	CGCG	1 cut(s)	1711
BshFI	GGCC	9 cut(s)	197, 235, 602, 909, 1817, 2413, 3127, 3284, 3313
BshNI	GGYRCC	1 cut(s)	249
BshVI	ATCGAT	1 cut(s)	266
BsiHKAI	GWGCWC	5 cut(s)	101, 177, 1238, 2077, 2496
BsiHKCI	CYCGRG	2 cut(s)	1765, 3533
BsiSI	CCGG	2 cut(s)	1766, 3534
BslFI	GGGAC	3 cut(s)	1457, 1748, 2488
BsmAI	GTCTC	3 cut(s)	1642, 2642, 3359
BsmFI	GGGAC	3 cut(s)	1457, 1748, 2488
BsmI	GAATGC	2 cut(s)	2615, 3294
BsnI	GGCC	9 cut(s)	197, 235, 602, 909, 1817, 2413, 3127, 3284, 3313
BsoBI	CYCGRG	2 cut(s)	1765, 3533
Bsp119I	TTCGAA	1 cut(s)	2187
Bsp120I	GGGCCC	1 cut(s)	3125
Bsp1286I	GDGCHC	6 cut(s)	101, 177, 1238, 2077, 2496, 3129
Bsp1407I	TGTACA	1 cut(s)	455
Bsp1720I	GCTNAGC	1 cut(s)	3407
Bsp19I	CCATGG	2 cut(s)	198, 1400
BspANI	GGCC	9 cut(s)	197, 235, 602, 909, 1817, 2413, 3127, 3284, 3313
BspCNI	CTCAG	6 cut(s)	784, 2080, 2479, 2638, 2878, 3399
BspDI	ATCGAT	1 cut(s)	266
BspFNI	CGCG	1 cut(s)	1711
BspHI	TCATGA	2 cut(s)	760, 2227
BspLI	GGNNCC	5 cut(s)	251, 463, 908, 2476, 3127
BspMAI	CTGCAG	1 cut(s)	1102
BspMI	ACCTGC	1 cut(s)	1285
BspOI	GCTAGC	1 cut(s)	804
BspPI	GGATC	4 cut(s)	1804, 2629, 2801, 3528
BspQI	GCTCTTC	1 cut(s)	1852
BspT104I	TTCGAA	1 cut(s)	2187
BspT107I	GGYRCC	1 cut(s)	249
BsrBI	CCGCTC	1 cut(s)	247
BsrDI	GCAATG	3 cut(s)	1288, 3157, 3220
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	8 cut(s)	859, 907, 1469, 1656, 1869, 2163, 3119, 3496
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	2199
BssT1I	CCWWGG	5 cut(s)	198, 1400, 2510, 2810, 3247
Bst2BI	CACGAG	1 cut(s)	2199
Bst2UI	CCWGG	4 cut(s)	718, 1882, 2534, 2727
Bst6I	CTCTTC	1 cut(s)	1852
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	3 cut(s)	3102, 3186, 3240
BstAUI	TGTACA	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	2187
BstDEI	CTNAG	7 cut(s)	404, 771, 2088, 2487, 2646, 2865, 3407
BstDSI	CCRYGG	4 cut(s)	198, 614, 1400, 2478
BstENI	CCTNNNNNAGG	1 cut(s)	3251
BstF5I	GGATG	8 cut(s)	726, 910, 1511, 2098, 2260, 2355, 2542, 3446
BstFNI	CGCG	1 cut(s)	1711
BstH2I	RGCGCY	2 cut(s)	91, 317
BstHHI	GCGC	5 cut(s)	90, 184, 316, 1713, 3102
BstMAI	GTCTC	3 cut(s)	1642, 2642, 3359
BstNI	CCWGG	4 cut(s)	718, 1882, 2534, 2727
BstNSI	RCATGY	8 cut(s)	1136, 1456, 1515, 1617, 3030, 3100, 3294, 3387
BstSCI	CCNGG	8 cut(s)	716, 1764, 1765, 1880, 2532, 2725, 3532, 3533
BstSFI	CTRYAG	1 cut(s)	1098
BstSLI	GKGCMC	1 cut(s)	3129
BstUI	CGCG	1 cut(s)	1711
BstV1I	GCAGC	5 cut(s)	1475, 2989, 3089, 3390, 3423
BstV2I	GAAGAC	4 cut(s)	300, 1536, 2196, 2892
BstX2I	RGATCY	1 cut(s)	2621
BstYI	RGATCY	1 cut(s)	2621
Bsu15I	ATCGAT	1 cut(s)	266
BsuRI	GGCC	9 cut(s)	197, 235, 602, 909, 1817, 2413, 3127, 3284, 3313
BsuTUI	ATCGAT	1 cut(s)	266
BtgI	CCRYGG	4 cut(s)	198, 614, 1400, 2478
BtsCI	GGATG	8 cut(s)	726, 910, 1511, 2098, 2260, 2355, 2542, 3446
BtsIMutI	CAGTG	6 cut(s)	900, 1710, 1726, 2156, 2433, 3489
BveI	ACCTGC	1 cut(s)	1285
CaiI	CAGNNNCTG	1 cut(s)	1475
CciI	TCATGA	2 cut(s)	760, 2227
CfoI	GCGC	5 cut(s)	90, 184, 316, 1713, 3102
Cfr13I	GGNCC	9 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710, 3125, 3126
Cfr9I	CCCGGG	2 cut(s)	1765, 3533
ClaI	ATCGAT	1 cut(s)	266
CseI	GACGC	2 cut(s)	16, 2934
Csp6I	GTAC	6 cut(s)	250, 456, 882, 1351, 1743, 3135
CviQI	GTAC	6 cut(s)	250, 456, 882, 1351, 1743, 3135
DdeI	CTNAG	7 cut(s)	404, 771, 2088, 2487, 2646, 2865, 3407
DraIII	CACNNNGTG	1 cut(s)	422
DrdI	GACNNNNNNGTC	2 cut(s)	100, 2456
DseDI	GACNNNNNNGTC	2 cut(s)	100, 2456
EaeI	YGGCCR	5 cut(s)	195, 600, 1815, 2411, 3282
Eam1104I	CTCTTC	1 cut(s)	1852
EarI	CTCTTC	1 cut(s)	1852
EciI	GGCGGA	2 cut(s)	45, 2479
Ecl136II	GAGCTC	2 cut(s)	99, 175
Eco130I	CCWWGG	5 cut(s)	198, 1400, 2510, 2810, 3247
Eco147I	AGGCCT	1 cut(s)	3313
Eco24I	GRGCYC	3 cut(s)	101, 177, 3129
Eco32I	GATATC	2 cut(s)	229, 1116
Eco47I	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
Eco47III	AGCGCT	1 cut(s)	315
Eco53kI	GAGCTC	2 cut(s)	99, 175
Eco57I	CTGAAG	7 cut(s)	1071, 1158, 1194, 1261, 1306, 1443, 2610
Eco88I	CYCGRG	2 cut(s)	1765, 3533
EcoICRI	GAGCTC	2 cut(s)	99, 175
EcoNI	CCTNNNNNAGG	1 cut(s)	3251
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	4 cut(s)	716, 1880, 2532, 2725
EcoRV	GATATC	2 cut(s)	229, 1116
EcoT14I	CCWWGG	5 cut(s)	198, 1400, 2510, 2810, 3247
EcoT22I	ATGCAT	3 cut(s)	1367, 2615, 3296
EcoT38I	GRGCYC	3 cut(s)	101, 177, 3129
ErhI	CCWWGG	5 cut(s)	198, 1400, 2510, 2810, 3247
FalI	AAGNNNNNCTT	8 cut(s)	74, 106, 1103, 1135, 2010, 2042, 2115, 2147
FaqI	GGGAC	3 cut(s)	1457, 1748, 2488
FauI	CCCGC	2 cut(s)	1332, 1618
FauNDI	CATATG	2 cut(s)	2250, 3131
FbaI	TGATCA	4 cut(s)	385, 1246, 1732, 1747
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	9 cut(s)	1464, 1709, 2292, 2851, 3003, 3103, 3244, 3404, 3412
FokI	GGATG	8 cut(s)	733, 897, 1518, 2105, 2267, 2362, 2549, 3433
FriOI	GRGCYC	3 cut(s)	101, 177, 3129
Fsp4HI	GCNGC	9 cut(s)	1464, 1709, 2292, 2851, 3003, 3103, 3244, 3404, 3412
FspBI	CTAG	9 cut(s)	560, 801, 981, 1406, 1641, 2313, 2375, 2765, 2847
GlaI	GCGC	5 cut(s)	89, 183, 315, 1712, 3101
GluI	GCNGC	9 cut(s)	1464, 1709, 2292, 2851, 3003, 3103, 3244, 3404, 3412
GsuI	CTGGAG	3 cut(s)	263, 1020, 1452
HaeII	RGCGCY	2 cut(s)	91, 317
HaeIII	GGCC	9 cut(s)	197, 235, 602, 909, 1817, 2413, 3127, 3284, 3313
HapII	CCGG	2 cut(s)	1766, 3534
HgaI	GACGC	2 cut(s)	16, 2934
HhaI	GCGC	5 cut(s)	90, 184, 316, 1713, 3102
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	5 cut(s)	88, 182, 314, 1711, 3100
HinP1I	GCGC	5 cut(s)	88, 182, 314, 1711, 3100
HincII	GTYRAC	3 cut(s)	15, 61, 1419
HindII	GTYRAC	3 cut(s)	15, 61, 1419
HindIII	AAGCTT	4 cut(s)	692, 2000, 2339, 2695
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	2 cut(s)	1766, 3534
HphI	GGTGA	6 cut(s)	179, 627, 706, 2024, 2921, 2922
Hpy99I	CGWCG	6 cut(s)	10, 106, 109, 112, 115, 3440
HpyAV	CCTTC	7 cut(s)	163, 719, 2234, 2728, 2943, 3153, 3247
HpyCH4IV	ACGT	1 cut(s)	325
HpyF3I	CTNAG	7 cut(s)	404, 771, 2088, 2487, 2646, 2865, 3407
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	5 cut(s)	88, 182, 314, 1711, 3100
KpnI	GGTACC	1 cut(s)	253
Ksp22I	TGATCA	4 cut(s)	385, 1246, 1732, 1747
KspAI	GTTAAC	1 cut(s)	15
LguI	GCTCTTC	1 cut(s)	1852
LmnI	GCTCC	9 cut(s)	59, 172, 244, 461, 547, 1196, 1471, 2443, 2499
Lsp1109I	GCAGC	5 cut(s)	1475, 2989, 3089, 3390, 3423
LweI	GCATC	6 cut(s)	169, 458, 563, 1359, 2785, 3381
MaeI	CTAG	9 cut(s)	560, 801, 981, 1406, 1641, 2313, 2375, 2765, 2847
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	8 cut(s)	1489, 2368, 2505, 2515, 2660, 2874, 3325, 3511
MbiI	CCGCTC	1 cut(s)	247
MflI	RGATCY	1 cut(s)	2621
MhlI	GDGCHC	6 cut(s)	101, 177, 1238, 2077, 2496, 3129
MlsI	TGGCCA	4 cut(s)	197, 1817, 2413, 3284
MluNI	TGGCCA	4 cut(s)	197, 1817, 2413, 3284
MlyI	GAGTC	5 cut(s)	884, 2239, 2777, 2794, 2906
MmeI	TCCRAC	2 cut(s)	93, 2711
Mox20I	TGGCCA	4 cut(s)	197, 1817, 2413, 3284
Mph1103I	ATGCAT	3 cut(s)	1367, 2615, 3296
MroXI	GAANNNNTTC	3 cut(s)	1182, 1274, 1699
MscI	TGGCCA	4 cut(s)	197, 1817, 2413, 3284
MseI	TTAA	9 cut(s)	14, 750, 918, 948, 1572, 1863, 1944, 2592, 2604
MslI	CAYNNNNRTG	7 cut(s)	285, 719, 844, 2082, 2253, 3045, 3145
Msp20I	TGGCCA	4 cut(s)	197, 1817, 2413, 3284
MspA1I	CMGCKG	4 cut(s)	213, 1214, 1339, 2853
MspI	CCGG	2 cut(s)	1766, 3534
MspR9I	CCNGG	8 cut(s)	718, 1766, 1767, 1882, 2534, 2727, 3534, 3535
Mva1269I	GAATGC	2 cut(s)	2615, 3294
MvaI	CCWGG	4 cut(s)	718, 1882, 2534, 2727
MvnI	CGCG	1 cut(s)	1711
NciI	CCSGG	4 cut(s)	1766, 1767, 3534, 3535
NcoI	CCATGG	2 cut(s)	198, 1400
NdeI	CATATG	2 cut(s)	2250, 3131
NheI	GCTAGC	1 cut(s)	800
NlaIV	GGNNCC	5 cut(s)	251, 463, 908, 2476, 3127
NmeAIII	GCCGAG	3 cut(s)	628, 997, 1102
NmuCI	GTSAC	2 cut(s)	2368, 3325
NsiI	ATGCAT	3 cut(s)	1367, 2615, 3296
NspI	RCATGY	8 cut(s)	1136, 1456, 1515, 1617, 3030, 3100, 3294, 3387
NspV	TTCGAA	1 cut(s)	2187
PaeI	GCATGC	4 cut(s)	1136, 1515, 3100, 3387
PagI	TCATGA	2 cut(s)	760, 2227
PceI	AGGCCT	1 cut(s)	3313
PciSI	GCTCTTC	1 cut(s)	1852
PcsI	WCGNNNNNNNCGW	2 cut(s)	101, 107
PctI	GAATGC	2 cut(s)	2615, 3294
PdmI	GAANNNNTTC	3 cut(s)	1182, 1274, 1699
PflFI	GACNNNGTC	1 cut(s)	1085
PflMI	CCANNNNNTGG	3 cut(s)	490, 2420, 3064
PkrI	GCNGC	9 cut(s)	1465, 1710, 2293, 2852, 3004, 3104, 3245, 3405, 3413
PleI	GAGTC	5 cut(s)	883, 2239, 2776, 2794, 2905
PpsI	GAGTC	5 cut(s)	883, 2239, 2776, 2794, 2905
Ppu21I	YACGTR	1 cut(s)	326
PshBI	ATTAAT	1 cut(s)	918
Psp124BI	GAGCTC	2 cut(s)	101, 177
Psp6I	CCWGG	4 cut(s)	716, 1880, 2532, 2725
PspGI	CCWGG	4 cut(s)	716, 1880, 2532, 2725
PspN4I	GGNNCC	5 cut(s)	251, 463, 908, 2476, 3127
PspOMI	GGGCCC	1 cut(s)	3125
PspPI	GGNCC	9 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710, 3125, 3126
PsrI	GAACNNNNNNTAC	4 cut(s)	498, 530, 1516, 1548
PstI	CTGCAG	1 cut(s)	1102
PstNI	CAGNNNCTG	1 cut(s)	1475
PsuI	RGATCY	1 cut(s)	2621
PsyI	GACNNNGTC	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	1214
RsaI	GTAC	6 cut(s)	251, 457, 883, 1352, 1744, 3136
RsaNI	GTAC	6 cut(s)	250, 456, 882, 1351, 1743, 3135
RseI	CAYNNNNRTG	7 cut(s)	285, 719, 844, 2082, 2253, 3045, 3145
SacI	GAGCTC	2 cut(s)	101, 177
SapI	GCTCTTC	1 cut(s)	1852
SaqAI	TTAA	9 cut(s)	14, 750, 918, 948, 1572, 1863, 1944, 2592, 2604
SatI	GCNGC	9 cut(s)	1464, 1709, 2292, 2851, 3003, 3103, 3244, 3404, 3412
Sau96I	GGNCC	9 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710, 3125, 3126
ScaI	AGTACT	1 cut(s)	883
SchI	GAGTC	5 cut(s)	884, 2239, 2777, 2794, 2906
ScrFI	CCNGG	8 cut(s)	718, 1766, 1767, 1882, 2534, 2727, 3534, 3535
SduI	GDGCHC	6 cut(s)	101, 177, 1238, 2077, 2496, 3129
SfaNI	GCATC	6 cut(s)	169, 458, 563, 1359, 2785, 3381
SfcI	CTRYAG	1 cut(s)	1098
SfuI	TTCGAA	1 cut(s)	2187
SinI	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
SmaI	CCCGGG	2 cut(s)	1767, 3535
SmiMI	CAYNNNNRTG	7 cut(s)	285, 719, 844, 2082, 2253, 3045, 3145
SmlI	CTYRAG	3 cut(s)	259, 2402, 2880
SmoI	CTYRAG	3 cut(s)	259, 2402, 2880
SphI	GCATGC	4 cut(s)	1136, 1515, 3100, 3387
SseBI	AGGCCT	1 cut(s)	3313
SspI	AATATT	1 cut(s)	1441
SspMI	CTAG	9 cut(s)	560, 801, 981, 1406, 1641, 2313, 2375, 2765, 2847
SstI	GAGCTC	2 cut(s)	101, 177
StuI	AGGCCT	1 cut(s)	3313
StyD4I	CCNGG	8 cut(s)	716, 1764, 1765, 1880, 2532, 2725, 3532, 3533
StyI	CCWWGG	5 cut(s)	198, 1400, 2510, 2810, 3247
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	9 cut(s)	69, 177, 266, 1312, 1386, 1606, 1799, 2187, 3468
TatI	WGTACW	4 cut(s)	455, 881, 1742, 3134
TauI	GCSGC	4 cut(s)	1711, 2294, 2853, 3246
Tru1I	TTAA	9 cut(s)	14, 750, 918, 948, 1572, 1863, 1944, 2592, 2604
Tru9I	TTAA	9 cut(s)	14, 750, 918, 948, 1572, 1863, 1944, 2592, 2604
TscAI	CASTG	6 cut(s)	907, 1710, 1726, 2163, 2440, 3496
TseFI	GTSAC	2 cut(s)	2368, 3325
TseI	GCWGC	5 cut(s)	1463, 3002, 3102, 3403, 3411
Tsp45I	GTSAC	2 cut(s)	2368, 3325
TspGWI	ACGGA	7 cut(s)	39, 46, 239, 603, 2039, 2723, 2735
TspMI	CCCGGG	2 cut(s)	1765, 3533
TspRI	CASTG	6 cut(s)	907, 1710, 1726, 2163, 2440, 3496
Tth111I	GACNNNGTC	1 cut(s)	1085
Van91I	CCANNNNNTGG	3 cut(s)	490, 2420, 3064
VpaK11BI	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
VspI	ATTAAT	1 cut(s)	918
XagI	CCTNNNNNAGG	1 cut(s)	3251
XapI	RAATTY	3 cut(s)	2684, 3111, 3191
XceI	RCATGY	8 cut(s)	1136, 1456, 1515, 1617, 3030, 3100, 3294, 3387
XmaI	CCCGGG	2 cut(s)	1765, 3533
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	3 cut(s)	1182, 1274, 1699
XspI	CTAG	9 cut(s)	560, 801, 981, 1406, 1641, 2313, 2375, 2765, 2847
ZrmI	AGTACT	1 cut(s)	883
Zsp2I	ATGCAT	3 cut(s)	1367, 2615, 3296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.