Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Reverse (-)

5204236 .. 5215233

Gene Structure 10998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG076200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3711 bp

ATGGCGACGCCGTTAACGGTGGACGGAGGCGGAGGGCTGGCGGTGCTGTCAAGCTCCGTCAACAAAGTCGATTCTACGAGTAAGGGGCGCTTGACGAGCTCGTCGTCGGAGGAGGAGAGGTCGCCGATTCTGATATTCTTGTTCTTTCACAAGGCAATTCGGAAGGAGCTCGATGCGCTTCACCGATTGGCCATGGCTTTCGCCACCGGAAAGCAGACGGATATCAGGCCCTTGCTGGAGCGGTACCATTTCTTGAGATCGATTTACAAGCACCACTCCAATGCCGAAGACGAGGTAATCTTTCCAGCGCTTGATATACGTGTGAAGAATGTAGCACAAACATACTCGCTTGAACACAAGGGCGAAACCAATCTTTTTGATCATCTATTTGAGCTGCTAAGTTCTAATGCACAAAGTGATGAAAGTTTCACAAGGGAGTTAGCATCTTGTACAGGAGCCTTACAAACATCAGTTAGCCAACACATGGCAAAGGAGGAGGAACAGGTCTTACCCTTGCTGATTGAGAAGTTTTCAGTTGAGGAGCAGGCATCTCTAGTCTGGCAGTTTCTATGCAGTATTCCTGTGAATATGATGGCCGAGTTTCTTCCGTGGCTTTCATCATCAGTTTCACCTGATGAATATCAGGATTTGCGGAAATGCTTAAGCAAGATTGTTCCAGAGGAAAAGCTTCTTCAACAAGTCATTTTCACCTGGATGGAAGGTAGAACAAGCAATAACGTGGTTAAAAGTTGTCATGATTCTCCTCAGTTCCAATGTTGCGTGGAATCTGGTGCTAGCACATCAAGTCTACATATAGAGAAGATAAATTGTCCATGTGAGTGTAGGACTGGGAAAAGGAAGTATTTACAGTCAAGTACTGATGTTTCTGATACCACTGGGGGCCATCCAATTAATGAAATACTGCTTTGGCATAATGCCATTAAAAAGGAGTTAAATGAGATAGCCGAGGAGGCTAGGAAGATACAACTGTCTGGAGATTTTACTAATCTATCAGCTTTCAATGAGAGGTTGCAATTTGTTGCTGAAGTTTGCATTTTTCACAGTATTGCCGAGGACAAGGTCATATTTCCTGCAGTAGATGGAAAGATATCCTTTTTCCAAGAGCATGCTGAAGAAGAAAGTCAGTTCAATGAGTTCAGGTGTCTGATTGAAAACATTCAAAGTGCAGGAGCTATCTCTACTTCAGCTGATTTTTATGCAGAGCTGTGCTCGCACGCTGATCAAATAATAGAAACTATACAGAAGCACTTCAGCAATGAAGAAGTGCAGGTTCTTCCACTTGCTCGAAAGCACTTCAGCTTCAAAAGACAGCGGGAACTATTGTATCAGAGTTTATGCATGATGCCCCTGAAATTGATCGAGCGTGTTTTTCCATGGCTAGTCAGATTGTTGACTGAAGATGAAATGAAGAATATTCTCAAAAACATGCAGTTAGCAGCTCCAGTCCCTGATTCAGCTCTGGTAACACTTTTTTCTGGATGGGCATGCAAGGCTCGTAATCAGGGTTCATGCTTGTCTTCAAGTGAACTTGGTTGCTGTCCTGTTAAAAGTTTTACTGATATTGAAGAAGATTTTGTTCGACCCGCATGTGCTTGTGCTTCTGGATTGTCTGCTAGAGAGAGACTGGTATCAGCTCAAGTAAATAATGTGAAAAGGCTGGTCAAACGAAATGTTTCAGTGCCGCGCAAAAACAGTGATACCCCTGATCAATGTTGTACCGATCAATCTTGCCGTGTCCCGGGTTTAGGAGTAAACAACACTAATCTTGGATCAAGTTCTCAATTTGTGGCCAAGTCTTTGCGGTCCTTGTCTTTCAGCTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTTGCCTGGGAAACAGATAATTCTTCCTTTGATATTGGTTGTGGAGAACGACCTATTGATACTATTTTTAAGTTTCATAAAGCCATTCACAAAGATTTGGAGTATTTGGATATTGAATCTGGAAAGCTTGGTAATGGTGATGAAGCCACACTTCGGCAGTTTATAGGAAGATTCCGTTTGCTATGGGGCTTATACAGAGCACACAGTAATGCTGAGGATGATATAGTGTTTCCTGCATTGGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCATACACACTGGACCATAAACAGGAGGAAAAATTATTCAAAGACATCTCTCGTGTTCTTTCTGAACTTTCTCACCTTCATGAAAGCATGGAAAAGACTCATATGGATGAGGATTTAGCAGGAAGTAGCATGAGTTTTTCTGCCGCAAATGGTGTGAATTATACTAGAAATTACAATGAGCTGGCTACAAAGCTTCAAGGGATGTGCAAGTCTATAAAAGTGACACTAGATCATCACATTTTCAGGGAAGAACTTGAGTTGTGGCCATTATTTGGCAAACACTTCACTGTTGAGGAGCAAGACAAAATAGTTGGCCGGATTATTGGGACCACTGGTGCTGAGGTGCTCCAATCAATGTTACCTTGGGTAACTTCTGCACTTACCCAGGATGAACAGAATAAATTGATGGACACATGGAAGCAAGCAACTAAAAATACTATGTTTAATGAGTGGCTTAATGAATGCATGAAAGGATCTTCAGAATCAACTTCACGAACTGAGACAAGGGAAAGTAACATTTCTCAAAAAGGTGTTGAATTTCAAGAAAGCTTGGACCAGACAGACCAGATGTTCAAGCCTGGTTGGAAGGACATATTCCGTATGAATCAAAATGAACTGGAGTCAGAGATCAGAAAGGTTTATCGTGATGCGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAAAATCTTATGACTAGCCGCTGGATAGCTACTCAGCAGAAGTTACCTCAAGCAACAGGTGGAGAGTCTTCTAATGGTGAAGATGTATTTGGACGCTCACCTTCATACCGTGATGTGGAGAAAAAAGTATTTGGGTGTGAACACTACAAAAGAAACTGTAAACTCCGAGCTGCTTGTTGTGGCAAGTTATTTGCATGTAGATTTTGCCATGACAATGTGAGCGATCATTCAATGGATAGGAAAGCAACATCGGAAATGATGTGCATGCGCTGCCTATACATTCAGCCAGTTGGGCCCATATGTACTACACCTTCATGCAATGAACTATCTATGGCAAAGTATTATTGCAATATCTGCAAATTTTTCGATGATGAAAGGACTGTATACCATTGCCCGTTTTGCAATTTATGCCGCCTTGGGAAGGGTCTTGGCATCGACTTTTTTCATTGCATGACATGCAATTGTTGCCTGGGGATAAAGTTGGTGAATCACAAATGCCTGGAGAAAAGTTTAGAAACAAATTGCCCTATCTGCTGTGATTTCTTGTTCACATCCAGTGCAACAGTTAGGGCTTTGCCATGTGGCCATTACATGCATTCAGCTTGCTTTCAGGCCTACACTTGCAGTCACTATACTTGCCCAATTTGTAGCAAGTCTCTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCCTTATTGGCTGCTGAGCAGCTTCCAGAGGAATACCAGAACCGTCGGCAGGACATCCTTTGTAATGATTGTGATCGAAAGGGTACCTCACGCTTTCACTGGCTGTATCACAAGTGCGGTAACTGTGGATCATACAATACCCGGGTGATCAAGGGTGAGGCAACAAATACCGACTGTCCTATGTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1236

Amino Acids

139.81

Weight (kDa)

6.02

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	48 - 173	3.3e-11	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	988 - 1056	8.2e-19	CHY zinc finger
zf-RING_2	PF13639	1116 - 1158	4.7e-07	Ring finger domain
zinc_ribbon_6	PF14599	1164 - 1221	2.5e-24	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	100
Acc36I	ACCTGC	1 cut(s)	1279
Acc65I	GGTACC	2 cut(s)	243, 3602
AccB1I	GGYRCC	2 cut(s)	243, 3602
AccB7I	CCANNNNNTGG	2 cut(s)	484, 2414
AccBSI	CCGCTC	1 cut(s)	241
AccI	GTMKAC	2 cut(s)	808, 3210
AccII	CGCG	1 cut(s)	1705
AclWI	GGATC	4 cut(s)	1798, 2623, 2795, 3655
AcoI	YGGCCR	6 cut(s)	189, 594, 1809, 2405, 2455, 3409
AcsI	RAATTY	2 cut(s)	2678, 3185
AcuI	CTGAAG	7 cut(s)	1065, 1152, 1188, 1255, 1300, 1437, 2604
AcyI	GRCGYC	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	416
AfaI	GTAC	6 cut(s)	245, 451, 877, 1738, 3130, 3604
AfeI	AGCGCT	1 cut(s)	309
AfiI	CCNNNNNNNGG	9 cut(s)	484, 1759, 1766, 2022, 2164, 2414, 2941, 3247, 3568
AflII	CTTAAG	1 cut(s)	661
AflIII	ACRYGT	1 cut(s)	319
AjnI	CCWGG	6 cut(s)	710, 1874, 2526, 2719, 3294, 3324
AjuI	GAANNNNNNNTTGG	2 cut(s)	2898, 2930
Alw21I	GWGCWC	5 cut(s)	101, 171, 1232, 2071, 2490
Alw26I	GTCTC	3 cut(s)	1636, 2636, 3486
AlwI	GGATC	4 cut(s)	1798, 2623, 2795, 3655
AlwNI	CAGNNNCTG	1 cut(s)	1469
Ama87I	CYCGRG	2 cut(s)	1759, 3660
Aor51HI	AGCGCT	1 cut(s)	309
ApaI	GGGCCC	1 cut(s)	3123
ApeKI	GCWGC	6 cut(s)	394, 1457, 2996, 3096, 3530, 3538
ApoI	RAATTY	2 cut(s)	2678, 3185
AseI	ATTAAT	1 cut(s)	912
Asp700I	GAANNNNTTC	4 cut(s)	687, 1176, 1268, 1693
Asp718I	GGTACC	2 cut(s)	243, 3602
AspLEI	GCGC	5 cut(s)	90, 178, 310, 1707, 3096
AspS9I	GGNCC	8 cut(s)	228, 901, 1824, 2155, 2469, 2695, 3119, 3120
AsuC2I	CCSGG	4 cut(s)	1760, 1761, 3661, 3662
AsuNHI	GCTAGC	1 cut(s)	794
AvaI	CYCGRG	2 cut(s)	1759, 3660
AvaII	GGWCC	4 cut(s)	1824, 2155, 2469, 2695
BaeGI	GKGCMC	1 cut(s)	3123
BaeI	ACNNNNGTAYC	4 cut(s)	974, 1007, 1328, 1361
BalI	TGGCCA	4 cut(s)	191, 1811, 2407, 3411
BanI	GGYRCC	2 cut(s)	243, 3602
BanII	GRGCYC	3 cut(s)	101, 171, 3123
BarI	GAAGNNNNNNTAC	2 cut(s)	3121, 3153
BauI	CACGAG	1 cut(s)	2193
BbsI	GAAGAC	3 cut(s)	294, 1530, 2886
Bbv12I	GWGCWC	5 cut(s)	101, 171, 1232, 2071, 2490
BbvCI	CCTCAGC	2 cut(s)	2082, 2481
BbvI	GCAGC	6 cut(s)	381, 1469, 2983, 3083, 3517, 3550
BccI	CCATC	7 cut(s)	586, 709, 912, 1094, 1494, 1858, 2542
BceAI	ACGGC	1 cut(s)	1737
BcgI	CGANNNNNNTGC	2 cut(s)	3172, 3206
BciT130I	CCWGG	6 cut(s)	712, 1876, 2528, 2721, 3296, 3326
BclI	TGATCA	4 cut(s)	379, 1240, 1726, 3666
BcnI	CCSGG	4 cut(s)	1760, 1761, 3661, 3662
BcoDI	GTCTC	3 cut(s)	1636, 2636, 3486
BfaI	CTAG	8 cut(s)	554, 795, 975, 1400, 1635, 2307, 2369, 2841
BfmI	CTRYAG	1 cut(s)	1092
BfoI	RGCGCY	2 cut(s)	91, 311
BfrI	CTTAAG	1 cut(s)	661
BfuAI	ACCTGC	1 cut(s)	1279
BglI	GCCNNNNNGGC	3 cut(s)	971, 3118, 3527
BlpI	GCTNAGC	1 cut(s)	3534
BmcAI	AGTACT	1 cut(s)	877
Bme18I	GGWCC	4 cut(s)	1824, 2155, 2469, 2695
BmeT110I	CYCGRG	2 cut(s)	1759, 3660
BmgT120I	GGNCC	8 cut(s)	228, 901, 1824, 2155, 2469, 2695, 3119, 3120
BmiI	GGNNCC	6 cut(s)	245, 457, 902, 2470, 3121, 3604
BmrI	ACTGGG	2 cut(s)	858, 906
BmsI	GCATC	7 cut(s)	163, 452, 557, 1353, 2779, 3267, 3508
BmtI	GCTAGC	1 cut(s)	798
BmuI	ACTGGG	2 cut(s)	858, 906
BpiI	GAAGAC	3 cut(s)	294, 1530, 2886
BplI	GAGNNNNNCTC	2 cut(s)	1214, 1246
BpmI	CTGGAG	5 cut(s)	257, 1014, 1446, 2780, 3347
Bpu10I	CCTNAGC	2 cut(s)	2082, 2481
Bpu1102I	GCTNAGC	1 cut(s)	3534
BpuEI	CTTGAG	4 cut(s)	274, 1641, 2417, 2859
BpuMI	CCSGG	4 cut(s)	1760, 1761, 3661, 3662
Bsa29I	ATCGAT	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	320
BsaBI	GATNNNNATC	2 cut(s)	639, 3591
BsaHI	GRCGYC	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	9 cut(s)	484, 1759, 1766, 2022, 2164, 2414, 2941, 3247, 3568
Bse3DI	GCAATG	4 cut(s)	1282, 3151, 3214, 3271
Bse8I	GATNNNNATC	2 cut(s)	639, 3591
BseBI	CCWGG	6 cut(s)	712, 1876, 2528, 2721, 3296, 3326
BseCI	ATCGAT	1 cut(s)	260
BseGI	GGATG	9 cut(s)	720, 904, 1505, 2092, 2254, 2349, 2536, 3377, 3573
BseJI	GATNNNNATC	2 cut(s)	639, 3591
BseLI	CCNNNNNNNGG	9 cut(s)	484, 1759, 1766, 2022, 2164, 2414, 2941, 3247, 3568
BseMI	GCAATG	4 cut(s)	1282, 3151, 3214, 3271
BseMII	CTCAG	6 cut(s)	779, 2073, 2472, 2631, 2873, 3525
BseRI	GAGGAG	7 cut(s)	125, 128, 509, 554, 753, 983, 2450
BseSI	GKGCMC	1 cut(s)	3123
BseXI	GCAGC	6 cut(s)	381, 1469, 2983, 3083, 3517, 3550
BsgI	GTGCAG	3 cut(s)	1206, 1307, 2502
Bsh1236I	CGCG	1 cut(s)	1705
BshNI	GGYRCC	2 cut(s)	243, 3602
BshVI	ATCGAT	1 cut(s)	260
BsiHKAI	GWGCWC	5 cut(s)	101, 171, 1232, 2071, 2490
BsiHKCI	CYCGRG	2 cut(s)	1759, 3660
BsiSI	CCGG	4 cut(s)	207, 1760, 2458, 3661
BslFI	GGGAC	3 cut(s)	1451, 1742, 2482
BslI	CCNNNNNNNGG	9 cut(s)	484, 1759, 1766, 2022, 2164, 2414, 2941, 3247, 3568
BsmAI	GTCTC	3 cut(s)	1636, 2636, 3486
BsmFI	GGGAC	3 cut(s)	1451, 1742, 2482
BsmI	GAATGC	2 cut(s)	2609, 3421
BsoBI	CYCGRG	2 cut(s)	1759, 3660
Bsp120I	GGGCCC	1 cut(s)	3119
Bsp1286I	GDGCHC	6 cut(s)	101, 171, 1232, 2071, 2490, 3123
Bsp1407I	TGTACA	1 cut(s)	449
Bsp1720I	GCTNAGC	1 cut(s)	3534
Bsp19I	CCATGG	2 cut(s)	192, 1394
BspCNI	CTCAG	6 cut(s)	778, 2074, 2473, 2632, 2872, 3526
BspDI	ATCGAT	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	1705
BspHI	TCATGA	2 cut(s)	754, 2221
BspLI	GGNNCC	6 cut(s)	245, 457, 902, 2470, 3121, 3604
BspMAI	CTGCAG	1 cut(s)	1096
BspMI	ACCTGC	1 cut(s)	1279
BspOI	GCTAGC	1 cut(s)	798
BspPI	GGATC	4 cut(s)	1798, 2623, 2795, 3655
BspQI	GCTCTTC	1 cut(s)	1846
BspT107I	GGYRCC	2 cut(s)	243, 3602
BspTI	CTTAAG	1 cut(s)	661
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	4 cut(s)	1282, 3151, 3214, 3271
BsrGI	TGTACA	1 cut(s)	449
BssNAI	GTATAC	1 cut(s)	3211
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	2193
BssT1I	CCWWGG	5 cut(s)	192, 1394, 2504, 2804, 3241
Bst1107I	GTATAC	1 cut(s)	3211
Bst2BI	CACGAG	1 cut(s)	2193
Bst2UI	CCWGG	6 cut(s)	712, 1876, 2528, 2721, 3296, 3326
Bst6I	CTCTTC	1 cut(s)	1846
BstACI	GRCGYC	1 cut(s)	8
BstAFI	CTTAAG	1 cut(s)	661
BstAPI	GCANNNNNTGC	5 cut(s)	3096, 3180, 3234, 3282, 3291
BstAUI	TGTACA	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	320
BstDEI	CTNAG	7 cut(s)	398, 765, 2082, 2481, 2640, 2859, 3534
BstDSI	CCRYGG	3 cut(s)	192, 608, 1394
BstENI	CCTNNNNNAGG	1 cut(s)	3245
BstF5I	GGATG	9 cut(s)	720, 904, 1505, 2092, 2254, 2349, 2536, 3377, 3573
BstFNI	CGCG	1 cut(s)	1705
BstH2I	RGCGCY	2 cut(s)	91, 311
BstHHI	GCGC	5 cut(s)	90, 178, 310, 1707, 3096
BstMAI	GTCTC	3 cut(s)	1636, 2636, 3486
BstNI	CCWGG	6 cut(s)	712, 1876, 2528, 2721, 3296, 3326
BstNSI	RCATGY	9 cut(s)	1130, 1450, 1509, 1611, 3024, 3094, 3285, 3421, 3514
BstSFI	CTRYAG	1 cut(s)	1092
BstSLI	GKGCMC	1 cut(s)	3123
BstUI	CGCG	1 cut(s)	1705
BstV1I	GCAGC	6 cut(s)	381, 1469, 2983, 3083, 3517, 3550
BstV2I	GAAGAC	3 cut(s)	294, 1530, 2886
BstX2I	RGATCY	1 cut(s)	2615
BstYI	RGATCY	1 cut(s)	2615
BstZ17I	GTATAC	1 cut(s)	3211
Bsu15I	ATCGAT	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	260
BtgI	CCRYGG	3 cut(s)	192, 608, 1394
BtsCI	GGATG	9 cut(s)	720, 904, 1505, 2092, 2254, 2349, 2536, 3377, 3573
BtsIMutI	CAGTG	8 cut(s)	894, 1704, 1720, 2150, 2427, 2472, 3388, 3616
BveI	ACCTGC	1 cut(s)	1279
CaiI	CAGNNNCTG	1 cut(s)	1469
CciI	TCATGA	2 cut(s)	754, 2221
CfoI	GCGC	5 cut(s)	90, 178, 310, 1707, 3096
Cfr13I	GGNCC	8 cut(s)	228, 901, 1824, 2155, 2469, 2695, 3119, 3120
Cfr9I	CCCGGG	2 cut(s)	1759, 3660
ClaI	ATCGAT	1 cut(s)	260
CseI	GACGC	2 cut(s)	16, 2928
Csp6I	GTAC	6 cut(s)	244, 450, 876, 1737, 3129, 3603
CviQI	GTAC	6 cut(s)	244, 450, 876, 1737, 3129, 3603
DdeI	CTNAG	7 cut(s)	398, 765, 2082, 2481, 2640, 2859, 3534
DraIII	CACNNNGTG	1 cut(s)	416
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
EaeI	YGGCCR	6 cut(s)	189, 594, 1809, 2405, 2455, 3409
Eam1104I	CTCTTC	1 cut(s)	1846
EarI	CTCTTC	1 cut(s)	1846
EciI	GGCGGA	1 cut(s)	45
Ecl136II	GAGCTC	2 cut(s)	99, 169
Eco130I	CCWWGG	5 cut(s)	192, 1394, 2504, 2804, 3241
Eco147I	AGGCCT	1 cut(s)	3440
Eco24I	GRGCYC	3 cut(s)	101, 171, 3123
Eco32I	GATATC	2 cut(s)	223, 1110
Eco47I	GGWCC	4 cut(s)	1824, 2155, 2469, 2695
Eco47III	AGCGCT	1 cut(s)	309
Eco53kI	GAGCTC	2 cut(s)	99, 169
Eco57I	CTGAAG	7 cut(s)	1065, 1152, 1188, 1255, 1300, 1437, 2604
Eco88I	CYCGRG	2 cut(s)	1759, 3660
EcoICRI	GAGCTC	2 cut(s)	99, 169
EcoNI	CCTNNNNNAGG	1 cut(s)	3245
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRII	CCWGG	6 cut(s)	710, 1874, 2526, 2719, 3294, 3324
EcoRV	GATATC	2 cut(s)	223, 1110
EcoT14I	CCWWGG	5 cut(s)	192, 1394, 2504, 2804, 3241
EcoT22I	ATGCAT	3 cut(s)	1361, 2609, 3423
EcoT38I	GRGCYC	3 cut(s)	101, 171, 3123
ErhI	CCWWGG	5 cut(s)	192, 1394, 2504, 2804, 3241
FalI	AAGNNNNNCTT	8 cut(s)	74, 106, 1097, 1129, 2004, 2036, 2109, 2141
FaqI	GGGAC	3 cut(s)	1451, 1742, 2482
FauI	CCCGC	2 cut(s)	1326, 1612
FauNDI	CATATG	2 cut(s)	2244, 3125
FbaI	TGATCA	4 cut(s)	379, 1240, 1726, 3666
FblI	GTMKAC	2 cut(s)	808, 3210
FokI	GGATG	9 cut(s)	727, 891, 1512, 2099, 2261, 2356, 2543, 3364, 3560
FriOI	GRGCYC	3 cut(s)	101, 171, 3123
FspBI	CTAG	8 cut(s)	554, 795, 975, 1400, 1635, 2307, 2369, 2841
GlaI	GCGC	5 cut(s)	89, 177, 309, 1706, 3095
GsuI	CTGGAG	5 cut(s)	257, 1014, 1446, 2780, 3347
HaeII	RGCGCY	2 cut(s)	91, 311
HapII	CCGG	4 cut(s)	207, 1760, 2458, 3661
HgaI	GACGC	2 cut(s)	16, 2928
HhaI	GCGC	5 cut(s)	90, 178, 310, 1707, 3096
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	5 cut(s)	88, 176, 308, 1705, 3094
HinP1I	GCGC	5 cut(s)	88, 176, 308, 1705, 3094
HincII	GTYRAC	3 cut(s)	15, 61, 1413
HindII	GTYRAC	3 cut(s)	15, 61, 1413
HindIII	AAGCTT	4 cut(s)	686, 1994, 2333, 2689
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	4 cut(s)	207, 1760, 2458, 3661
Hpy99I	CGWCG	4 cut(s)	10, 106, 109, 3567
HpyAV	CCTTC	7 cut(s)	157, 713, 2228, 2722, 2937, 3147, 3241
HpyCH4IV	ACGT	2 cut(s)	319, 738
HpyF3I	CTNAG	7 cut(s)	398, 765, 2082, 2481, 2640, 2859, 3534
HpySE526I	ACGT	2 cut(s)	319, 738
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	5 cut(s)	88, 176, 308, 1705, 3094
KpnI	GGTACC	2 cut(s)	247, 3606
Ksp22I	TGATCA	4 cut(s)	379, 1240, 1726, 3666
KspAI	GTTAAC	1 cut(s)	15
LguI	GCTCTTC	1 cut(s)	1846
LmnI	GCTCC	9 cut(s)	59, 166, 238, 455, 541, 1190, 1465, 2437, 2493
Lsp1109I	GCAGC	6 cut(s)	381, 1469, 2983, 3083, 3517, 3550
LweI	GCATC	7 cut(s)	163, 452, 557, 1353, 2779, 3267, 3508
MaeI	CTAG	8 cut(s)	554, 795, 975, 1400, 1635, 2307, 2369, 2841
MaeII	ACGT	2 cut(s)	319, 738
MaeIII	GTNAC	8 cut(s)	1483, 2362, 2499, 2509, 2654, 2868, 3452, 3638
MbiI	CCGCTC	1 cut(s)	241
MfeI	CAATTG	1 cut(s)	3286
MflI	RGATCY	1 cut(s)	2615
MhlI	GDGCHC	6 cut(s)	101, 171, 1232, 2071, 2490, 3123
MlsI	TGGCCA	4 cut(s)	191, 1811, 2407, 3411
MluNI	TGGCCA	4 cut(s)	191, 1811, 2407, 3411
MlyI	GAGTC	4 cut(s)	2233, 2771, 2788, 2900
MmeI	TCCRAC	2 cut(s)	87, 2705
Mox20I	TGGCCA	4 cut(s)	191, 1811, 2407, 3411
Mph1103I	ATGCAT	3 cut(s)	1361, 2609, 3423
MroXI	GAANNNNTTC	4 cut(s)	687, 1176, 1268, 1693
MscI	TGGCCA	4 cut(s)	191, 1811, 2407, 3411
MslI	CAYNNNNRTG	8 cut(s)	279, 713, 838, 2076, 2220, 2247, 3039, 3139
Msp20I	TGGCCA	4 cut(s)	191, 1811, 2407, 3411
MspA1I	CMGCKG	3 cut(s)	1208, 1333, 2847
MspCI	CTTAAG	1 cut(s)	661
MspI	CCGG	4 cut(s)	207, 1760, 2458, 3661
MunI	CAATTG	1 cut(s)	3286
Mva1269I	GAATGC	2 cut(s)	2609, 3421
MvaI	CCWGG	6 cut(s)	712, 1876, 2528, 2721, 3296, 3326
MvnI	CGCG	1 cut(s)	1705
NciI	CCSGG	4 cut(s)	1760, 1761, 3661, 3662
NcoI	CCATGG	2 cut(s)	192, 1394
NdeI	CATATG	2 cut(s)	2244, 3125
NheI	GCTAGC	1 cut(s)	794
NlaIV	GGNNCC	6 cut(s)	245, 457, 902, 2470, 3121, 3604
NmeAIII	GCCGAG	3 cut(s)	622, 991, 1096
NmuCI	GTSAC	2 cut(s)	2362, 3452
NsiI	ATGCAT	3 cut(s)	1361, 2609, 3423
NspI	RCATGY	9 cut(s)	1130, 1450, 1509, 1611, 3024, 3094, 3285, 3421, 3514
PaeI	GCATGC	4 cut(s)	1130, 1509, 3094, 3514
PagI	TCATGA	2 cut(s)	754, 2221
PceI	AGGCCT	1 cut(s)	3440
PciSI	GCTCTTC	1 cut(s)	1846
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PctI	GAATGC	2 cut(s)	2609, 3421
PdmI	GAANNNNTTC	4 cut(s)	687, 1176, 1268, 1693
PflFI	GACNNNGTC	1 cut(s)	1079
PflMI	CCANNNNNTGG	2 cut(s)	484, 2414
PleI	GAGTC	4 cut(s)	2233, 2770, 2788, 2899
PpsI	GAGTC	4 cut(s)	2233, 2770, 2788, 2899
Ppu21I	YACGTR	1 cut(s)	320
PshBI	ATTAAT	1 cut(s)	912
Psp124BI	GAGCTC	2 cut(s)	101, 171
Psp6I	CCWGG	6 cut(s)	710, 1874, 2526, 2719, 3294, 3324
PspGI	CCWGG	6 cut(s)	710, 1874, 2526, 2719, 3294, 3324
PspN4I	GGNNCC	6 cut(s)	245, 457, 902, 2470, 3121, 3604
PspOMI	GGGCCC	1 cut(s)	3119
PspPI	GGNCC	8 cut(s)	228, 901, 1824, 2155, 2469, 2695, 3119, 3120
PsrI	GAACNNNNNNTAC	4 cut(s)	492, 524, 1510, 1542
PstI	CTGCAG	1 cut(s)	1096
PstNI	CAGNNNCTG	1 cut(s)	1469
PsuI	RGATCY	1 cut(s)	2615
PsyI	GACNNNGTC	1 cut(s)	1079
PvuII	CAGCTG	1 cut(s)	1208
RsaI	GTAC	6 cut(s)	245, 451, 877, 1738, 3130, 3604
RsaNI	GTAC	6 cut(s)	244, 450, 876, 1737, 3129, 3603
RseI	CAYNNNNRTG	8 cut(s)	279, 713, 838, 2076, 2220, 2247, 3039, 3139
SacI	GAGCTC	2 cut(s)	101, 171
SapI	GCTCTTC	1 cut(s)	1846
Sau96I	GGNCC	8 cut(s)	228, 901, 1824, 2155, 2469, 2695, 3119, 3120
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	4 cut(s)	2233, 2771, 2788, 2900
SduI	GDGCHC	6 cut(s)	101, 171, 1232, 2071, 2490, 3123
SfaNI	GCATC	7 cut(s)	163, 452, 557, 1353, 2779, 3267, 3508
SfcI	CTRYAG	1 cut(s)	1092
SinI	GGWCC	4 cut(s)	1824, 2155, 2469, 2695
SmaI	CCCGGG	2 cut(s)	1761, 3662
SmiMI	CAYNNNNRTG	8 cut(s)	279, 713, 838, 2076, 2220, 2247, 3039, 3139
SmlI	CTYRAG	5 cut(s)	253, 661, 1656, 2396, 2874
SmoI	CTYRAG	5 cut(s)	253, 661, 1656, 2396, 2874
SphI	GCATGC	4 cut(s)	1130, 1509, 3094, 3514
SseBI	AGGCCT	1 cut(s)	3440
SspI	AATATT	1 cut(s)	1435
SspMI	CTAG	8 cut(s)	554, 795, 975, 1400, 1635, 2307, 2369, 2841
SstI	GAGCTC	2 cut(s)	101, 171
StuI	AGGCCT	1 cut(s)	3440
StyI	CCWWGG	5 cut(s)	192, 1394, 2504, 2804, 3241
TaiI	ACGT	2 cut(s)	322, 741
TaqI	TCGA	9 cut(s)	69, 171, 260, 1306, 1380, 1600, 3192, 3261, 3595
TatI	WGTACW	3 cut(s)	449, 875, 3128
TauI	GCSGC	4 cut(s)	1705, 2288, 2847, 3240
TscAI	CASTG	8 cut(s)	901, 1704, 1720, 2157, 2434, 2479, 3388, 3623
TseFI	GTSAC	2 cut(s)	2362, 3452
TseI	GCWGC	6 cut(s)	394, 1457, 2996, 3096, 3530, 3538
Tsp45I	GTSAC	2 cut(s)	2362, 3452
TspGWI	ACGGA	6 cut(s)	39, 46, 233, 597, 2033, 2729
TspMI	CCCGGG	2 cut(s)	1759, 3660
TspRI	CASTG	8 cut(s)	901, 1704, 1720, 2157, 2434, 2479, 3388, 3623
Tth111I	GACNNNGTC	1 cut(s)	1079
Van91I	CCANNNNNTGG	2 cut(s)	484, 2414
Vha464I	CTTAAG	1 cut(s)	661
VpaK11BI	GGWCC	4 cut(s)	1824, 2155, 2469, 2695
VspI	ATTAAT	1 cut(s)	912
XagI	CCTNNNNNAGG	1 cut(s)	3245
XapI	RAATTY	2 cut(s)	2678, 3185
XceI	RCATGY	9 cut(s)	1130, 1450, 1509, 1611, 3024, 3094, 3285, 3421, 3514
XmaI	CCCGGG	2 cut(s)	1759, 3660
XmiI	GTMKAC	2 cut(s)	808, 3210
XmnI	GAANNNNTTC	4 cut(s)	687, 1176, 1268, 1693
XspI	CTAG	8 cut(s)	554, 795, 975, 1400, 1635, 2307, 2369, 2841
ZrmI	AGTACT	1 cut(s)	877
Zsp2I	ATGCAT	3 cut(s)	1361, 2609, 3423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.