Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Reverse (-)

45100667 .. 45116160

Gene Structure 15494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGTTCTTGTTCGACTGGTTCTACGGCGTCCTCGCATCTCTGGGCCTCTGGCAGAAGGAGGCCAAGATTCTCTTCCTCGGCCTCGACAATGCCGGAAAGACCACGCTGCTTCATATGTTGAAGGATGAGAGACTAGTGCAGCACCAGCCGACGCAGCATCCGACGTCGGAGGAATTGAGCATTGGGAAGATTAAGTTCAAGGCTTTCGATTTGGGGGGACACCAGATCGCTCGTAGAGTCTGGAAGGATTACTATGCCAAGGTGTCTCAAAGTTTGATGGATTGCAACTTTCAGCTCAAGTATGATCTGCACATTGGTTGCCATGGGCTTCATGATTATACTATAATTTTACACTTTTGCCTGGTGGATGCAGTAGTTTACTTGGTTGATGCATATGATAAAGATCGGTTTGCAGAGTCAAAGAAGGAGCTGGATGCACTCCTTTCAGATGAAAGCCTGGCAACTGTTCCATTTCTTGTTCTGGGCAACAAGATTGACATCCCCTATGCTGCTTCAGAAGATGAGCTGCGCTATCATCTGGGACTGAGCAATTTCACAACTGGCAAGGGAAAAGTGAATCTTGCTGATTCTAGTGTTCGGCCCCTTGAGGTCTTCATGTGCAGTATCGTGCGCAAGATGGGTCTTTATAAGAGATCAACCACTCAGATACAAAAGACAAGACGGCAAATCAGATTGTGTGCGTTTTGGAAAAGCAAAAAAAATTCTCTGCACATGCTCACAAAAAAAAACTTGGCTGACCAAAACAGAATTAGCAGGAGGCTACCTGAAACTAATCAATTTACATCTAGAAGGATTCTCCGTCATTTTCTTTCAGACTTGAAATTGAAATTGAAATTGAAATTGAATTTCTCACAGAGAAGGAGAAGAAGAAGAAGAATGTTTATGGTGGATTGGTTCTACGGTGTTCTGGCATCCCTAGGACTGTGGCAGAAGGAAGCTAAGATCTTGTTCTTGGGGCTCGATAATGCCGGGAAGACCACCTTGCTTCACATGCTCAAAGATGAGAGATTAGTTCAGCACCAACCGACTCAGTACCCGACCTCCGAGGAGTTGAGTATAGGGAAGATTAAGTTCAAGGCTTTTGATTTGGGTGGCCATCAGATCGCTCGCAGAGTCTGGAAGGATTATTACGCCAAGGTAGATGCTGTTGTCTACCTGGTTGATGCTTTTGACAAGGAGAGATTTGCAGAGTCTAAGAAGGAGCTCGACGCTCTTCTCTCCGATGAGTCACTGGCCACTGTCCCGTTTCTTATCTTGGGAAACAAGATTGACATACCCTATGCTGCCTCAGAGGATGAGCTGCGTTATCATATGGGCCTGACCAACTTCACAACTGGGAAGGGGAAGGTCAATCTGGCGGATTCCAATGTCCGTCCACTGGAGCTCCCAAATAAACATGTTTCTTGTGGATTGGTTCTCTATGGAATTCTTGAATCGTTGGGGCTATGGCATAAAGACGCTAGGATCTGTTTCTTAGGTCTTGATAATGCTGGAAAGACCACTTTGCTTCACATGCTCAGATTTGGGAGCTTGAAGCAAAGCGAACCAACTCAGCAACCAACCTCGGATGATTTTTCAATAGGGAGTGTCCACTTCACTGCCTTTGATTTGGGTGGGCATCAGACCGCTCGCAGAGTCTGGAAGGATTACTATGCCCAGCTGGATGCTGTAGTCTACGTAATTGATGCTTATGACAGGGAAAGATTTGCAGAGTCGAGAAGGGAGCTCGATTCTCTTCTCTCTGAAGAGTCTCTGGCAACAGTGCCGTTTCTTATATTGGGAAACAAGGTCGACTTGCCTTATGCTGCCTCAGAGGAGGAGCTGCGTGCTTCTCTCGGCCTGACCAACTTCACAACTGGCAAGGGTAAGGTCAAGATGTACCATTCCAATGTCCGCCCCATGGAGGTGTTCATGTGCAGCATTGCCCGCAAGATGGGTTATGGAGAAGGATTCAAGTGGCTTGCTCAGTATATCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

666

Amino Acids

76.44

Weight (kDa)

9.2

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 89	2.1e-30	ADP-ribosylation factor family
Arf	PF00025	120 - 217	2.2e-21	ADP-ribosylation factor family
Arf	PF00025	307 - 454	8.8e-55	ADP-ribosylation factor family
SRPRB	PF09439	318 - 441	6.8e-07	Signal recognition particle receptor beta subunit
Roc	PF08477	321 - 431	3.6e-07	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	321 - 429	4.9e-06	50S ribosome-binding GTPase
G-alpha	PF00503	350 - 432	1.4e-07	G-protein alpha subunit
Arf	PF00025	482 - 665	8.4e-58	ADP-ribosylation factor family
SRPRB	PF09439	493 - 619	2e-07	Signal recognition particle receptor beta subunit
G-alpha	PF00503	523 - 606	4.6e-07	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AatII	GACGTC	1 cut(s)	167
Acc16I	TGCGCA	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	1649
AccI	GTMKAC	3 cut(s)	1173, 1695, 1812
AciI	CCGC	4 cut(s)	1379, 1647, 1915, 1948
AclWI	GGATC	1 cut(s)	1493
AcoI	YGGCCR	2 cut(s)	1114, 1254
AcsI	RAATTY	3 cut(s)	721, 865, 1446
AcuI	CTGAAG	2 cut(s)	498, 1785
AcyI	GRCGYC	2 cut(s)	27, 164
AfaI	GTAC	2 cut(s)	1055, 1901
AfiI	CCNNNNNNNGG	4 cut(s)	1399, 1921, 1924, 1954
AflIII	ACRYGT	1 cut(s)	1417
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	360, 456, 1176
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 165, 197
Alw21I	GWGCWC	3 cut(s)	1227, 1407, 1749
Alw26I	GTCTC	3 cut(s)	124, 270, 1776
AlwI	GGATC	1 cut(s)	1493
AlwNI	CAGNNNCTG	2 cut(s)	1137, 1659
AoxI	GGCC	8 cut(s)	43, 60, 79, 599, 1114, 1254, 1336, 1858
ApoI	RAATTY	3 cut(s)	721, 865, 1446
AspA2I	CCTAGG	1 cut(s)	937
AspLEI	GCGC	2 cut(s)	531, 633
AspS9I	GGNCC	3 cut(s)	43, 600, 1336
AsuC2I	CCSGG	1 cut(s)	991
AvrII	CCTAGG	1 cut(s)	937
BalI	TGGCCA	2 cut(s)	1116, 1256
BanII	GRGCYC	4 cut(s)	981, 1227, 1407, 1749
BarI	GAAGNNNNNNTAC	2 cut(s)	1133, 1165
BbsI	GAAGAC	2 cut(s)	604, 1001
Bbv12I	GWGCWC	3 cut(s)	1227, 1407, 1749
BccI	CCATC	4 cut(s)	271, 631, 1125, 1948
BceAI	ACGGC	3 cut(s)	40, 698, 1771
BciT130I	CCWGG	3 cut(s)	362, 458, 1178
BcnI	CCSGG	1 cut(s)	991
BcoDI	GTCTC	3 cut(s)	124, 270, 1776
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	5 cut(s)	134, 591, 807, 938, 1482
BfmI	CTRYAG	1 cut(s)	1689
BglII	AGATCT	1 cut(s)	963
BlnI	CCTAGG	1 cut(s)	937
Bme1390I	CCNGG	4 cut(s)	362, 458, 991, 1178
BmgT120I	GGNCC	3 cut(s)	43, 600, 1336
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	4 cut(s)	362, 458, 991, 1178
BmrI	ACTGGG	1 cut(s)	1365
BmuI	ACTGGG	1 cut(s)	1365
BpiI	GAAGAC	2 cut(s)	604, 1001
BpmI	CTGGAG	1 cut(s)	1421
BpuEI	CTTGAG	2 cut(s)	281, 626
BpuMI	CCSGG	1 cut(s)	991
BsaAI	YACGTR	1 cut(s)	1699
BsaBI	GATNNNNATC	2 cut(s)	402, 497
BsaHI	GRCGYC	2 cut(s)	27, 164
BsaJI	CCNNGG	8 cut(s)	76, 258, 322, 937, 1065, 1155, 1584, 1920
BsaXI	ACNNNNNCTCC	4 cut(s)	1046, 1076, 1389, 1419
Bsc4I	CCNNNNNNNGG	4 cut(s)	1399, 1921, 1924, 1954
Bse1I	ACTGG	6 cut(s)	20, 565, 1257, 1360, 1404, 1882
Bse3DI	GCAATG	1 cut(s)	1941
Bse8I	GATNNNNATC	2 cut(s)	402, 497
BseBI	CCWGG	3 cut(s)	362, 458, 1178
BseDI	CCNNGG	8 cut(s)	76, 258, 322, 937, 1065, 1155, 1584, 1920
BseGI	GGATG	9 cut(s)	130, 157, 373, 439, 498, 932, 1321, 1594, 1690
BseJI	GATNNNNATC	2 cut(s)	402, 497
BseLI	CCNNNNNNNGG	4 cut(s)	1399, 1921, 1924, 1954
BseMI	GCAATG	1 cut(s)	1941
BseMII	CTCAG	8 cut(s)	536, 677, 1064, 1323, 1552, 1586, 1845, 2000
BseNI	ACTGG	6 cut(s)	20, 565, 1257, 1360, 1404, 1882
BseRI	GAGGAG	3 cut(s)	1082, 1850, 1853
BseYI	CCCAGC	1 cut(s)	1677
BsgI	GTGCAG	5 cut(s)	158, 293, 640, 713, 1957
BshFI	GGCC	8 cut(s)	45, 62, 81, 601, 1116, 1256, 1338, 1860
BsiHKAI	GWGCWC	3 cut(s)	1227, 1407, 1749
BsiSI	CCGG	2 cut(s)	93, 990
BslFI	GGGAC	3 cut(s)	231, 555, 1247
BslI	CCNNNNNNNGG	4 cut(s)	1399, 1921, 1924, 1954
BsmAI	GTCTC	3 cut(s)	124, 270, 1776
BsmFI	GGGAC	3 cut(s)	231, 555, 1247
BsnI	GGCC	8 cut(s)	45, 62, 81, 601, 1116, 1256, 1338, 1860
Bsp1286I	GDGCHC	4 cut(s)	981, 1227, 1407, 1749
Bsp143I	GATC	7 cut(s)	225, 304, 403, 653, 963, 1122, 1485
Bsp19I	CCATGG	2 cut(s)	322, 1920
BspACI	CCGC	4 cut(s)	1379, 1647, 1915, 1948
BspANI	GGCC	8 cut(s)	45, 62, 81, 601, 1116, 1256, 1338, 1860
BspCNI	CTCAG	8 cut(s)	537, 676, 1063, 1322, 1551, 1585, 1844, 1999
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	1493
BspQI	GCTCTTC	1 cut(s)	1239
BsrBI	CCGCTC	1 cut(s)	1649
BsrDI	GCAATG	1 cut(s)	1941
BsrI	ACTGG	6 cut(s)	20, 565, 1257, 1360, 1404, 1882
BssECI	CCNNGG	8 cut(s)	76, 258, 322, 937, 1065, 1155, 1584, 1920
BssMI	GATC	7 cut(s)	225, 304, 403, 653, 963, 1122, 1485
BssNI	GRCGYC	2 cut(s)	27, 164
BssT1I	CCWWGG	5 cut(s)	258, 322, 937, 1155, 1920
Bst2UI	CCWGG	3 cut(s)	362, 458, 1178
Bst4CI	ACNGT	5 cut(s)	466, 923, 945, 1261, 1783
Bst6I	CTCTTC	4 cut(s)	77, 1239, 1761, 1761
BstACI	GRCGYC	2 cut(s)	27, 164
BstBAI	YACGTR	1 cut(s)	1699
BstC8I	GCNNGC	5 cut(s)	1129, 1651, 1848, 1948, 1983
BstDSI	CCRYGG	2 cut(s)	322, 1920
BstF5I	GGATG	9 cut(s)	130, 157, 373, 439, 498, 932, 1321, 1594, 1690
BstHHI	GCGC	2 cut(s)	531, 633
BstKTI	GATC	7 cut(s)	228, 307, 406, 656, 966, 1125, 1488
BstMAI	GTCTC	3 cut(s)	124, 270, 1776
BstMBI	GATC	7 cut(s)	225, 304, 403, 653, 963, 1122, 1485
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 154, 1012, 1534, 1947
BstNI	CCWGG	3 cut(s)	362, 458, 1178
BstNSI	RCATGY	4 cut(s)	736, 1015, 1421, 1537
BstSCI	CCNGG	4 cut(s)	360, 456, 989, 1176
BstSFI	CTRYAG	1 cut(s)	1689
BstSNI	TACGTA	1 cut(s)	1699
BstV2I	GAAGAC	2 cut(s)	604, 1001
BstX2I	RGATCY	2 cut(s)	963, 1485
BstYI	RGATCY	2 cut(s)	963, 1485
BsuRI	GGCC	8 cut(s)	45, 62, 81, 601, 1116, 1256, 1338, 1860
BtgI	CCRYGG	2 cut(s)	322, 1920
BtsCI	GGATG	9 cut(s)	130, 157, 373, 439, 498, 932, 1321, 1594, 1690
BtsI	GCAGTG	1 cut(s)	1617
BtsIMutI	CAGTG	5 cut(s)	1250, 1257, 1397, 1617, 1788
Cac8I	GCNNGC	5 cut(s)	1129, 1651, 1848, 1948, 1983
CaiI	CAGNNNCTG	2 cut(s)	1137, 1659
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	531, 633
Cfr13I	GGNCC	3 cut(s)	43, 600, 1336
CseI	GACGC	4 cut(s)	16, 160, 1238, 1487
CsiI	ACCWGGT	1 cut(s)	1176
Csp6I	GTAC	2 cut(s)	1054, 1900
CviAII	CATG	9 cut(s)	323, 332, 616, 733, 1012, 1418, 1534, 1921, 1933
CviQI	GTAC	2 cut(s)	1054, 1900
DpnI	GATC	7 cut(s)	227, 306, 405, 655, 965, 1124, 1487
DpnII	GATC	7 cut(s)	225, 304, 403, 653, 963, 1122, 1485
EaeI	YGGCCR	2 cut(s)	1114, 1254
Eam1104I	CTCTTC	4 cut(s)	77, 1239, 1761, 1761
EarI	CTCTTC	4 cut(s)	77, 1239, 1761, 1761
EciI	GGCGGA	2 cut(s)	1394, 1904
Ecl136II	GAGCTC	3 cut(s)	1225, 1405, 1747
Eco105I	TACGTA	1 cut(s)	1699
Eco130I	CCWWGG	5 cut(s)	258, 322, 937, 1155, 1920
Eco24I	GRGCYC	4 cut(s)	981, 1227, 1407, 1749
Eco53kI	GAGCTC	3 cut(s)	1225, 1405, 1747
Eco57I	CTGAAG	2 cut(s)	498, 1785
EcoICRI	GAGCTC	3 cut(s)	1225, 1405, 1747
EcoRI	GAATTC	1 cut(s)	1446
EcoRII	CCWGG	3 cut(s)	360, 456, 1176
EcoT14I	CCWWGG	5 cut(s)	258, 322, 937, 1155, 1920
EcoT22I	ATGCAT	1 cut(s)	394
EcoT38I	GRGCYC	4 cut(s)	981, 1227, 1407, 1749
ErhI	CCWWGG	5 cut(s)	258, 322, 937, 1155, 1920
FaeI	CATG	9 cut(s)	326, 335, 619, 736, 1015, 1421, 1537, 1924, 1936
FalI	AAGNNNNNCTT	8 cut(s)	56, 88, 564, 596, 986, 1018, 1799, 1831
FaqI	GGGAC	3 cut(s)	231, 555, 1247
FatI	CATG	9 cut(s)	322, 331, 615, 732, 1011, 1417, 1533, 1920, 1932
FauI	CCCGC	1 cut(s)	1955
FauNDI	CATATG	3 cut(s)	114, 394, 1332
FblI	GTMKAC	3 cut(s)	1173, 1695, 1812
FokI	GGATG	9 cut(s)	137, 144, 380, 446, 485, 919, 1328, 1601, 1697
FriOI	GRGCYC	4 cut(s)	981, 1227, 1407, 1749
FspBI	CTAG	5 cut(s)	134, 591, 807, 938, 1482
FspI	TGCGCA	1 cut(s)	632
GlaI	GCGC	2 cut(s)	530, 632
GsaI	CCCAGC	1 cut(s)	1681
GsuI	CTGGAG	1 cut(s)	1421
HaeIII	GGCC	8 cut(s)	45, 62, 81, 601, 1116, 1256, 1338, 1860
HapII	CCGG	2 cut(s)	93, 990
HgaI	GACGC	4 cut(s)	16, 160, 1238, 1487
HhaI	GCGC	2 cut(s)	531, 633
Hin1I	GRCGYC	2 cut(s)	27, 164
Hin1II	CATG	9 cut(s)	326, 335, 619, 736, 1015, 1421, 1537, 1924, 1936
Hin6I	GCGC	2 cut(s)	529, 631
HinP1I	GCGC	2 cut(s)	529, 631
HincII	GTYRAC	1 cut(s)	1813
HindII	GTYRAC	1 cut(s)	1813
HpaII	CCGG	2 cut(s)	93, 990
Hpy166II	GTNNAC	6 cut(s)	379, 1174, 1397, 1612, 1696, 1813
Hpy188III	TCNNGA	9 cut(s)	241, 332, 807, 1138, 1451, 1502, 1660, 1737, 1894
Hpy8I	GTNNAC	6 cut(s)	379, 1174, 1397, 1612, 1696, 1813
Hpy99I	CGWCG	4 cut(s)	154, 166, 169, 1232
HpyCH4III	ACNGT	5 cut(s)	466, 923, 945, 1261, 1783
HpyCH4IV	ACGT	2 cut(s)	164, 1698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 154, 1012, 1534, 1947
HpySE526I	ACGT	2 cut(s)	164, 1698
Hsp92I	GRCGYC	2 cut(s)	27, 164
Hsp92II	CATG	9 cut(s)	326, 335, 619, 736, 1015, 1421, 1537, 1924, 1936
HspAI	GCGC	2 cut(s)	529, 631
Kzo9I	GATC	7 cut(s)	225, 304, 403, 653, 963, 1122, 1485
LguI	GCTCTTC	1 cut(s)	1239
LmnI	GCTCC	7 cut(s)	427, 1222, 1402, 1410, 1548, 1744, 1840
MabI	ACCWGGT	1 cut(s)	1176
MaeI	CTAG	5 cut(s)	134, 591, 807, 938, 1482
MaeII	ACGT	2 cut(s)	164, 1698
MaeIII	GTNAC	1 cut(s)	1248
MalI	GATC	7 cut(s)	227, 306, 405, 655, 965, 1124, 1487
MbiI	CCGCTC	1 cut(s)	1649
MboI	GATC	7 cut(s)	225, 304, 403, 653, 963, 1122, 1485
MflI	RGATCY	2 cut(s)	963, 1485
MhlI	GDGCHC	4 cut(s)	981, 1227, 1407, 1749
MlsI	TGGCCA	2 cut(s)	1116, 1256
MluNI	TGGCCA	2 cut(s)	1116, 1256
MlyI	GAGTC	9 cut(s)	246, 425, 1042, 1143, 1220, 1256, 1665, 1742, 1778
MmeI	TCCRAC	2 cut(s)	147, 185
Mox20I	TGGCCA	2 cut(s)	1116, 1256
Mph1103I	ATGCAT	1 cut(s)	394
MscI	TGGCCA	2 cut(s)	1116, 1256
MseI	TTAA	2 cut(s)	192, 1089
MslI	CAYNNNNRTG	2 cut(s)	1908, 1925
Msp20I	TGGCCA	2 cut(s)	1116, 1256
MspA1I	CMGCKG	1 cut(s)	1681
MspI	CCGG	2 cut(s)	93, 990
MspR9I	CCNGG	4 cut(s)	362, 458, 991, 1178
MvaI	CCWGG	3 cut(s)	362, 458, 1178
MwoI	GCNNNNNNNGC	5 cut(s)	145, 154, 1012, 1534, 1947
NciI	CCSGG	1 cut(s)	991
NcoI	CCATGG	2 cut(s)	322, 1920
NdeI	CATATG	3 cut(s)	114, 394, 1332
NdeII	GATC	7 cut(s)	225, 304, 403, 653, 963, 1122, 1485
NlaIII	CATG	9 cut(s)	326, 335, 619, 736, 1015, 1421, 1537, 1924, 1936
NlaIV	GGNNCC	1 cut(s)	602
NmeAIII	GCCGAG	2 cut(s)	57, 1836
NmuCI	GTSAC	1 cut(s)	1248
NsbI	TGCGCA	1 cut(s)	632
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	4 cut(s)	736, 1015, 1421, 1537
PagI	TCATGA	1 cut(s)	331
PciI	ACATGT	1 cut(s)	1417
PciSI	GCTCTTC	1 cut(s)	1239
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PfeI	GAWTC	8 cut(s)	67, 577, 587, 814, 1382, 1454, 1751, 1971
PleI	GAGTC	9 cut(s)	245, 424, 1042, 1142, 1219, 1255, 1664, 1741, 1777
PpsI	GAGTC	9 cut(s)	245, 424, 1042, 1142, 1219, 1255, 1664, 1741, 1777
Ppu21I	YACGTR	1 cut(s)	1699
PscI	ACATGT	1 cut(s)	1417
PsiI	TTATAA	1 cut(s)	648
Psp124BI	GAGCTC	3 cut(s)	1227, 1407, 1749
Psp6I	CCWGG	3 cut(s)	360, 456, 1176
PspFI	CCCAGC	1 cut(s)	1677
PspGI	CCWGG	3 cut(s)	360, 456, 1176
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	3 cut(s)	43, 600, 1336
PstNI	CAGNNNCTG	2 cut(s)	1137, 1659
PsuI	RGATCY	2 cut(s)	963, 1485
PvuII	CAGCTG	1 cut(s)	1681
RsaI	GTAC	2 cut(s)	1055, 1901
RsaNI	GTAC	2 cut(s)	1054, 1900
RseI	CAYNNNNRTG	2 cut(s)	1908, 1925
SacI	GAGCTC	3 cut(s)	1227, 1407, 1749
SalI	GTCGAC	1 cut(s)	1811
SapI	GCTCTTC	1 cut(s)	1239
SaqAI	TTAA	2 cut(s)	192, 1089
Sau3AI	GATC	7 cut(s)	225, 304, 403, 653, 963, 1122, 1485
Sau96I	GGNCC	3 cut(s)	43, 600, 1336
SchI	GAGTC	9 cut(s)	246, 425, 1042, 1143, 1220, 1256, 1665, 1742, 1778
ScrFI	CCNGG	4 cut(s)	362, 458, 991, 1178
SduI	GDGCHC	4 cut(s)	981, 1227, 1407, 1749
SexAI	ACCWGGT	1 cut(s)	1176
SfcI	CTRYAG	1 cut(s)	1689
SmiMI	CAYNNNNRTG	2 cut(s)	1908, 1925
SmlI	CTYRAG	2 cut(s)	296, 605
SmoI	CTYRAG	2 cut(s)	296, 605
SnaBI	TACGTA	1 cut(s)	1699
SpeI	ACTAGT	1 cut(s)	133
SsiI	CCGC	4 cut(s)	1379, 1647, 1915, 1948
SspMI	CTAG	5 cut(s)	134, 591, 807, 938, 1482
SstI	GAGCTC	3 cut(s)	1227, 1407, 1749
StyD4I	CCNGG	4 cut(s)	360, 456, 989, 1176
StyI	CCWWGG	5 cut(s)	258, 322, 937, 1155, 1920
TaaI	ACNGT	5 cut(s)	466, 923, 945, 1261, 1783
TaiI	ACGT	2 cut(s)	167, 1701
TaqI	TCGA	9 cut(s)	12, 84, 207, 981, 1227, 1736, 1749, 1812, 1995
TfiI	GAWTC	8 cut(s)	67, 577, 587, 814, 1382, 1454, 1751, 1971
Tru1I	TTAA	2 cut(s)	192, 1089
Tru9I	TTAA	2 cut(s)	192, 1089
TscAI	CASTG	5 cut(s)	1257, 1264, 1404, 1624, 1788
TseFI	GTSAC	1 cut(s)	1248
Tsp45I	GTSAC	1 cut(s)	1248
TspDTI	ATGAA	5 cut(s)	101, 320, 465, 604, 1921
TspGWI	ACGGA	2 cut(s)	809, 1382
TspRI	CASTG	5 cut(s)	1257, 1264, 1404, 1624, 1788
XapI	RAATTY	3 cut(s)	721, 865, 1446
XbaI	TCTAGA	1 cut(s)	806
XceI	RCATGY	4 cut(s)	736, 1015, 1421, 1537
XmaJI	CCTAGG	1 cut(s)	937
XmiI	GTMKAC	3 cut(s)	1173, 1695, 1812
XspI	CTAG	5 cut(s)	134, 591, 807, 938, 1482
ZraI	GACGTC	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.