Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Reverse (-)

20476646 .. 20477567

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCGACGCCGTTAACGGACGGAGGCGGAGGACTGGCGGTGCTGTCGAATTCCGTCAACAAGGTGGATTCTTCGTCGGCCAATGGATGCTTGGCGAGCTCGGAGGAGCCAACGAGGTCTCCGATTCTGATCTTCTTGTTCTTTCACAAGGCAATTCGGAAGGAGCTCGATGCGCTTCACCGATTGGCCATGGCCTACGCCACCGGAAAAAGAACCGATATTCAGCCGCTGCTCGAGCGCTACCATTTCTTGAGATCGATTTACAAGCACCACTCCAATGCCGAAGACGAGGTAATCTTTCCAGCTCTTGATATACGGGTGAAGAATGTAGCACAAACTTACTCCCTTGAACATGAGGGTGAAACAAATCTTTTTGATCGATCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

130

Amino Acids

14.36

Weight (kDa)

6.28

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	47 - 112	2.5e-06	Hemerythrin HHE cation binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	27, 38, 227
AcoI	YGGCCR	2 cut(s)	78, 186
AcsI	RAATTY	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	8
AfeI	AGCGCT	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	3 cut(s)	99, 166, 305
AluI	AGCT	3 cut(s)	99, 166, 305
Alw21I	GWGCWC	2 cut(s)	101, 168
Alw26I	GTCTC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	239
AoxI	GGCC	3 cut(s)	78, 186, 192
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	49
AspLEI	GCGC	2 cut(s)	175, 240
AsuHPI	GGTGA	3 cut(s)	170, 331, 371
AvaI	CYCGRG	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	188
BanII	GRGCYC	2 cut(s)	101, 168
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	101, 168
BbvI	GCAGC	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	2 cut(s)	227, 230
BlsI	GCNGC	2 cut(s)	228, 231
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	108
BmsI	GCATC	2 cut(s)	77, 160
BpiI	GAAGAC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	271
Bsa29I	ATCGAT	2 cut(s)	257, 379
BsaBI	GATNNNNATC	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse1I	ACTGG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	128
BseCI	ATCGAT	2 cut(s)	257, 379
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	92
BseJI	GATNNNNATC	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	216
BshFI	GGCC	3 cut(s)	80, 188, 194
BshVI	ATCGAT	2 cut(s)	257, 379
BsiHKAI	GWGCWC	2 cut(s)	101, 168
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	80, 188, 194
Bso31I	GGTCTC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	101, 168
Bsp143I	GATC	4 cut(s)	129, 254, 376, 380
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	3 cut(s)	27, 38, 227
BspANI	GGCC	3 cut(s)	80, 188, 194
BspDI	ATCGAT	2 cut(s)	257, 379
BspLI	GGNNCC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	4 cut(s)	129, 254, 376, 380
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	97
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	175, 240
BstKTI	GATC	4 cut(s)	132, 257, 379, 383
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	4 cut(s)	129, 254, 376, 380
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 172, 235
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	291
Bsu15I	ATCGAT	2 cut(s)	257, 379
BsuRI	GGCC	3 cut(s)	80, 188, 194
BsuTUI	ATCGAT	2 cut(s)	257, 379
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	2 cut(s)	175, 240
ClaI	ATCGAT	2 cut(s)	257, 379
CseI	GACGC	1 cut(s)	16
CviAII	CATG	2 cut(s)	190, 353
CviJI	RGCY	8 cut(s)	80, 99, 109, 166, 188, 194, 226, 305
CviKI_1	RGCY	8 cut(s)	80, 99, 109, 166, 188, 194, 226, 305
DpnI	GATC	4 cut(s)	131, 256, 378, 382
DpnII	GATC	4 cut(s)	129, 254, 376, 380
EaeI	YGGCCR	2 cut(s)	78, 186
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	2 cut(s)	99, 166
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	2 cut(s)	101, 168
Eco31I	GGTCTC	1 cut(s)	123
Eco47III	AGCGCT	1 cut(s)	239
Eco53kI	GAGCTC	2 cut(s)	99, 166
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	2 cut(s)	99, 166
EcoRI	GAATTC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	101, 168
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	193, 356
FaiI	YATR	3 cut(s)	191, 314, 354
FatI	CATG	2 cut(s)	189, 352
Fnu4HI	GCNGC	2 cut(s)	227, 230
FokI	GGATG	1 cut(s)	99
FriOI	GRGCYC	2 cut(s)	101, 168
Fsp4HI	GCNGC	2 cut(s)	227, 230
GlaI	GCGC	2 cut(s)	174, 239
GluI	GCNGC	2 cut(s)	227, 230
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	80, 188, 194
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	175, 240
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	193, 356
Hin6I	GCGC	2 cut(s)	173, 238
HinP1I	GCGC	2 cut(s)	173, 238
HincII	GTYRAC	2 cut(s)	15, 58
HindII	GTYRAC	2 cut(s)	15, 58
HinfI	GANTC	2 cut(s)	68, 124
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	3 cut(s)	170, 331, 371
Hpy166II	GTNNAC	2 cut(s)	15, 58
Hpy188I	TCNGA	4 cut(s)	103, 123, 129, 159
Hpy188III	TCNNGA	2 cut(s)	250, 308
Hpy8I	GTNNAC	2 cut(s)	15, 58
Hpy99I	CGWCG	2 cut(s)	10, 79
HpyAV	CCTTC	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 172, 235
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	193, 356
HspAI	GCGC	2 cut(s)	173, 238
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	129, 254, 376, 380
LmnI	GCTCC	2 cut(s)	106, 163
LpnPI	CCDG	3 cut(s)	20, 217, 315
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	77, 160
MalI	GATC	4 cut(s)	131, 256, 378, 382
MboI	GATC	4 cut(s)	129, 254, 376, 380
MboII	GAAGA	4 cut(s)	63, 124, 296, 334
MhlI	GDGCHC	2 cut(s)	101, 168
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	49, 153
MluNI	TGGCCA	1 cut(s)	188
MnlI	CCTC	6 cut(s)	17, 23, 97, 108, 283, 349
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	2 cut(s)	276, 357
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	96, 172, 235
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	129, 254, 376, 380
NlaIII	CATG	2 cut(s)	193, 356
NlaIV	GGNNCC	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	68, 124
PkrI	GCNGC	2 cut(s)	228, 231
Psp124BI	GAGCTC	2 cut(s)	101, 168
PspN4I	GGNNCC	1 cut(s)	108
PspXI	VCTCGAGB	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	229
RseI	CAYNNNNRTG	2 cut(s)	276, 357
SacI	GAGCTC	2 cut(s)	101, 168
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	227, 230
Sau3AI	GATC	4 cut(s)	129, 254, 376, 380
SduI	GDGCHC	2 cut(s)	101, 168
SetI	ASST	6 cut(s)	66, 101, 119, 168, 294, 307
SfaNI	GCATC	2 cut(s)	77, 160
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	276, 357
SmlI	CTYRAG	2 cut(s)	233, 250
SmoI	CTYRAG	2 cut(s)	233, 250
Sse9I	AATT	2 cut(s)	49, 153
SsiI	CCGC	3 cut(s)	27, 38, 227
SstI	GAGCTC	2 cut(s)	101, 168
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	5 cut(s)	47, 168, 234, 257, 379
TasI	AATT	2 cut(s)	49, 153
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	68, 124
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseI	GCWGC	1 cut(s)	229
TspGWI	ACGGA	3 cut(s)	32, 36, 43
XapI	RAATTY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XhoI	CTCGAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.