Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Reverse (-)

5961411 .. 5973175

Gene Structure 11765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG076200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

ATGGCGACGCCGTTAACGGTGGACGGAGGCGGAGGGCTGGCGGTGCTGGCAAGCTCCGTCAACAAAGTCGATTCTCCGAGTAAGGGGCGCTTGACTAGCTCGTCGTCGTCGGAGGAGGAGGAGAGGTCGCCGATTCTGATATTCTTGTTCTTTCACAAGGCAATTCGGAAGGAGCTCGATGCGCTTCACCGATTGGCCATGGCTTTCGCCAGCGGAAAGCAGACGGATATCAGGCCCTTGCTGGAGCGGTACCATTTCTTGAGATCGATTTACAAGCACCACTCCAATGCCGAAGACGAGGTAATCTTTCCAGCGCTTGATATACGTGTGAAGAATGTAGCACAAACATACTCGCTTGAACACAAGGGCGAAACCAATCTTTTTGATCATCTATTTGAACTGCTAAGTTCTAATGCACAAAGTGATGACAGTTTCACAAGGGAGTTAGCATCTTGTACAGGAGCCTTACAAACATCAGTTAGCCAACACATGGCAAAGGAGGAGGAACAGGTCTTACCCTTGCTGATTGAGAAGTTTTCAGTTGAGGAGCAGGCATCTCTAGTCTGGCAGTTTCTATGCAGTATTCCTGTGAATATGATGGCCGAGTTTCTTCCGTGGCTTTCATCATCAGTTTCACCTGATGAATATCAGGATTTGCGGAAATGCTTATGCAAGATTGTTCCAGAGGAAAAGCTTCTTCAACAAGTCATTTTCACCTGGATGGAAGGTAGTACGAGCAATAATGTGGTTAAAAGTTATCATGATTCTCCTCAGTTCCAATGTTGCGTGGAATCTGGTGCTAGCACATCAAGTCTACATATAGAGAAGATAAATTGTCCATGTGAGTGTAGGACTGGGAAAAGGAAGTATTTAGAGTCAAGTACTGATGTTTCTGATACCACTGGGGGCCATCCAATTAATGAAATACTGCTTTGGCATAATGCCATTAAAAAGGAGTTAAATGAGATAGCCGAGGAGGCTAGGAAGATACAACTGTCTGGAGATTTTACTAATCTATCAGCTTTCAATGAGAGGTTGCAATTTGTTGCTGAAGTTTGCATTTTTCACAGTATTGCCGAGGACAAGGTCATATTTCCTGCAGTAGATGGAAAGATATCCTTTTTCCAAGAGCATGCTGAAGAAGAAAGTCAGTTCAATGAGTTCAGGTGTCTGATTGAAAACATTCAAAGTGCAGGAGCTATCTCTACTTCAGCTGATTTTTATGCAGAGCTGTGCTCACACGCTGATCAAATAATAGAAACTATACAGAAGCACTTCAGCAATGAAGAAGTGCAGGTTCTTCCACTTGCTCGAAAGCACTTCAGCTTCAAAAGACAGCGGGAACTATTGTACCAGAGTTTATGCATGATGCCCTTGAAATTGATCGAGCGTGTTTTTCCATGGCTAGTCAGATTGTTGACTGAAGATGAAATGAAGAATATTCTCAAAAACATGCAGTTGGCAGCTCCAGTCCCTGATTCAGCTCTGGTAACACTTTTTTCTGGATGGGCATGCAAGGCTCGTAATCAGGGTTCATGCTTGTCTTCAAGTGAACTTGGTTGCTGTCCTGTTAAAAGTTTTACTGATATTGAAGAAGATTTTGTTCGACCCGCATGTGCTTGTGCTTCTGGATTGTCTGCTAGAGAGAGACTGGTATCAGCTAAAGTAAATAATGTGAAAAGGCTGGTCAAACGAAATGTTTCAGTGCCGCGCAAAAACAGTGATACCCCTGATCAATGTTGTACTGATCAATCTTGCCGTGTCCCGGGTTTAGGAGTAAACAACACTAATCTTGGATCGAGTTCTCAATTCGTGGCCAAGTCTTTGCGGTCCTTGTCTTTCAGCTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTTGCCTGGGAAACAGATAATTCTTCCTTTGATATTGGTTGTGGAGAACGACCTATTGATACTATTTTTAAGTTTCATAAAGCCATTCGCAAAGACTTGGAGTATTTAGATATTGAATCTGGAAAGCTCGGTAATGGTGATGAAGCCACACTTCGGCAGTTTATAGGAAGATTCCGTTTGCTATGGGGCTTATACAGAGCACACAGTAATGCTGAGGATGATATAGTGTTTCCTGCATTGGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCATACACACTGGACCATAAACAGGAGGAAAAATTATTTGAAGACATCTCTCGTGTTCTTTCTGAACTTTCTGACCTTCATGAAAGCATGGAAAAGACTCATATGGATGAGGATTTAGCAGGAAGTAGCATGAATTTTTCTGCCGCAAATGGTGTGAACTATACTAGGAATTACAATGAGCTGGCTACAAAGCTTCAAGGGATGTGCAAGTCTATAAAAGTGACACTAGATCATCACATTTTCAGGGAAGAACTTGAGTTGTGGCCATTATTTGGCAAACACTTCACTGTTGAGGAGCAAGACAAAATAGTCGGGCGGATTATTGGGACCACGGGTGCTGAGGTGCTCCAATCAATGTTACCTTGGGTAACTTCTGCACTTACCCAGGATGAACAGAATAAATTGATGGACACATGGAAGCAAGCAACTAAAAATACTATGTTTAATGAGTGGCTTAATGAATGCATGAAAGGATCTTCAGAATCAACTTCACGAACTGAGACAAGGGAAAGTAACATTTCTCAAAAAGGTGTTGAATTTCAAGAAAGCTTGGACCAGACGGACCAGATGTTCAAGCCTGGTTGGAAGGACATATTCCGTATGAATCAAAATGAACTAGAGTCAGAGATCAGAAAGGTTTATCGTGATGCGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAAAATCTTATGACTAGCCGCTGGATAGCTACTCAGCAGAAGTTACCTCAAGCAACAGGTGGAGAGTCTTCTAATGGTGAAGATGTATTTGGACGCTCACCTTCATACCGTGATGTGGAGAAAAAAGTATTTGGGTGTGAACACTACAAAAGAAACTGTAAACTCCGAGCTGCTTGTTGTGGCAAGTTATTTGCATGTAGATTTTGCCATGACAATGTGAGCGACCATTCAATGGATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1024

Amino Acids

115.82

Weight (kDa)

5.65

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	50 - 175	1.7e-11	Hemerythrin HHE cation binding domain
Hemerythrin	PF01814	643 - 805	3.4e-07	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	990 - 1024	2.5e-09	CHY zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	100, 2456
Acc36I	ACCTGC	1 cut(s)	1285
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	3 cut(s)	490, 2420, 3064
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	814
AccII	CGCG	1 cut(s)	1711
AclWI	GGATC	3 cut(s)	1804, 2629, 2801
AcoI	YGGCCR	4 cut(s)	195, 600, 1815, 2411
AcsI	RAATTY	2 cut(s)	2281, 2684
AcuI	CTGAAG	7 cut(s)	1071, 1158, 1194, 1261, 1306, 1443, 2610
AcyI	GRCGYC	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	6 cut(s)	251, 457, 733, 883, 1352, 1744
AfeI	AGCGCT	1 cut(s)	315
AfiI	CCNNNNNNNGG	9 cut(s)	83, 490, 1765, 1772, 2028, 2170, 2420, 2947, 3064
AflIII	ACRYGT	1 cut(s)	325
AjnI	CCWGG	4 cut(s)	716, 1880, 2532, 2725
AjuI	GAANNNNNNNTTGG	2 cut(s)	2904, 2936
AloI	GAACNNNNNNTCC	2 cut(s)	2702, 2734
Alw21I	GWGCWC	4 cut(s)	177, 1238, 2077, 2496
Alw26I	GTCTC	2 cut(s)	1642, 2642
AlwI	GGATC	3 cut(s)	1804, 2629, 2801
AlwNI	CAGNNNCTG	1 cut(s)	1475
Ama87I	CYCGRG	1 cut(s)	1765
Aor51HI	AGCGCT	1 cut(s)	315
AoxI	GGCC	6 cut(s)	195, 233, 600, 907, 1815, 2411
ApeKI	GCWGC	2 cut(s)	1463, 3002
ApoI	RAATTY	2 cut(s)	2281, 2684
AseI	ATTAAT	1 cut(s)	918
Asp700I	GAANNNNTTC	4 cut(s)	693, 1182, 1274, 1699
Asp718I	GGTACC	1 cut(s)	249
AspLEI	GCGC	4 cut(s)	90, 184, 316, 1713
AspS9I	GGNCC	7 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710
AsuC2I	CCSGG	2 cut(s)	1766, 1767
AsuHPI	GGTGA	6 cut(s)	179, 627, 706, 2024, 2921, 2922
AsuNHI	GCTAGC	1 cut(s)	800
AvaI	CYCGRG	1 cut(s)	1765
AvaII	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
BaeI	ACNNNNGTAYC	4 cut(s)	980, 1013, 1334, 1367
BalI	TGGCCA	3 cut(s)	197, 1817, 2413
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	2199
BbsI	GAAGAC	4 cut(s)	300, 1536, 2196, 2892
Bbv12I	GWGCWC	4 cut(s)	177, 1238, 2077, 2496
BbvCI	CCTCAGC	2 cut(s)	2088, 2487
BbvI	GCAGC	2 cut(s)	1475, 2989
BccI	CCATC	7 cut(s)	592, 715, 918, 1100, 1500, 1864, 2548
BceAI	ACGGC	1 cut(s)	1743
BciT130I	CCWGG	4 cut(s)	718, 1882, 2534, 2727
BclI	TGATCA	4 cut(s)	385, 1246, 1732, 1747
BcnI	CCSGG	2 cut(s)	1766, 1767
BcoDI	GTCTC	2 cut(s)	1642, 2642
BfmI	CTRYAG	1 cut(s)	1098
BfoI	RGCGCY	2 cut(s)	91, 317
BfuAI	ACCTGC	1 cut(s)	1285
BglI	GCCNNNNNGGC	1 cut(s)	977
BisI	GCNGC	5 cut(s)	1464, 1709, 2292, 2851, 3003
BlsI	GCNGC	5 cut(s)	1465, 1710, 2293, 2852, 3004
BmcAI	AGTACT	1 cut(s)	883
Bme1390I	CCNGG	6 cut(s)	718, 1766, 1767, 1882, 2534, 2727
Bme18I	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
BmeT110I	CYCGRG	1 cut(s)	1765
BmgT120I	GGNCC	7 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710
BmiI	GGNNCC	4 cut(s)	251, 463, 908, 2476
BmrFI	CCNGG	6 cut(s)	718, 1766, 1767, 1882, 2534, 2727
BmrI	ACTGGG	2 cut(s)	864, 912
BmsI	GCATC	5 cut(s)	169, 458, 563, 1359, 2785
BmtI	GCTAGC	1 cut(s)	804
BmuI	ACTGGG	2 cut(s)	864, 912
BpiI	GAAGAC	4 cut(s)	300, 1536, 2196, 2892
BplI	GAGNNNNNCTC	2 cut(s)	1220, 1252
BpmI	CTGGAG	3 cut(s)	263, 1020, 1452
Bpu10I	CCTNAGC	2 cut(s)	2088, 2487
BpuEI	CTTGAG	3 cut(s)	280, 2423, 2865
BpuMI	CCSGG	2 cut(s)	1766, 1767
Bsa29I	ATCGAT	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	9 cut(s)	83, 490, 1765, 1772, 2028, 2170, 2420, 2947, 3064
Bse1I	ACTGG	6 cut(s)	859, 907, 1469, 1656, 1869, 2163
Bse3DI	GCAATG	1 cut(s)	1288
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	4 cut(s)	718, 1882, 2534, 2727
BseCI	ATCGAT	1 cut(s)	266
BseGI	GGATG	7 cut(s)	726, 910, 1511, 2098, 2260, 2355, 2542
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	9 cut(s)	83, 490, 1765, 1772, 2028, 2170, 2420, 2947, 3064
BseMI	GCAATG	1 cut(s)	1288
BseMII	CTCAG	5 cut(s)	785, 2079, 2478, 2637, 2879
BseNI	ACTGG	6 cut(s)	859, 907, 1469, 1656, 1869, 2163
BseRI	GAGGAG	8 cut(s)	128, 131, 134, 515, 560, 759, 989, 2456
BseXI	GCAGC	2 cut(s)	1475, 2989
BsgI	GTGCAG	3 cut(s)	1212, 1313, 2508
Bsh1236I	CGCG	1 cut(s)	1711
BshFI	GGCC	6 cut(s)	197, 235, 602, 909, 1817, 2413
BshNI	GGYRCC	1 cut(s)	249
BshVI	ATCGAT	1 cut(s)	266
BsiHKAI	GWGCWC	4 cut(s)	177, 1238, 2077, 2496
BsiHKCI	CYCGRG	1 cut(s)	1765
BsiSI	CCGG	1 cut(s)	1766
BslFI	GGGAC	3 cut(s)	1457, 1748, 2488
BslI	CCNNNNNNNGG	9 cut(s)	83, 490, 1765, 1772, 2028, 2170, 2420, 2947, 3064
BsmAI	GTCTC	2 cut(s)	1642, 2642
BsmFI	GGGAC	3 cut(s)	1457, 1748, 2488
BsmI	GAATGC	1 cut(s)	2615
BsnI	GGCC	6 cut(s)	197, 235, 602, 909, 1817, 2413
BsoBI	CYCGRG	1 cut(s)	1765
Bsp1286I	GDGCHC	4 cut(s)	177, 1238, 2077, 2496
Bsp1407I	TGTACA	1 cut(s)	455
Bsp19I	CCATGG	2 cut(s)	198, 1400
BspANI	GGCC	6 cut(s)	197, 235, 602, 909, 1817, 2413
BspCNI	CTCAG	5 cut(s)	784, 2080, 2479, 2638, 2878
BspDI	ATCGAT	1 cut(s)	266
BspFNI	CGCG	1 cut(s)	1711
BspHI	TCATGA	2 cut(s)	760, 2227
BspLI	GGNNCC	4 cut(s)	251, 463, 908, 2476
BspMAI	CTGCAG	1 cut(s)	1102
BspMI	ACCTGC	1 cut(s)	1285
BspOI	GCTAGC	1 cut(s)	804
BspPI	GGATC	3 cut(s)	1804, 2629, 2801
BspQI	GCTCTTC	1 cut(s)	1852
BspT107I	GGYRCC	1 cut(s)	249
BsrBI	CCGCTC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	1288
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	6 cut(s)	859, 907, 1469, 1656, 1869, 2163
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	2199
BssT1I	CCWWGG	4 cut(s)	198, 1400, 2510, 2810
Bst2BI	CACGAG	1 cut(s)	2199
Bst2UI	CCWGG	4 cut(s)	718, 1882, 2534, 2727
Bst4CI	ACNGT	9 cut(s)	19, 431, 996, 1070, 1721, 2081, 2437, 2942, 2990
Bst6I	CTCTTC	1 cut(s)	1852
BstACI	GRCGYC	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	326
BstDEI	CTNAG	6 cut(s)	404, 771, 2088, 2487, 2646, 2865
BstDSI	CCRYGG	4 cut(s)	198, 614, 1400, 2478
BstF5I	GGATG	7 cut(s)	726, 910, 1511, 2098, 2260, 2355, 2542
BstFNI	CGCG	1 cut(s)	1711
BstH2I	RGCGCY	2 cut(s)	91, 317
BstHHI	GCGC	4 cut(s)	90, 184, 316, 1713
BstMAI	GTCTC	2 cut(s)	1642, 2642
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 47, 96, 181, 977, 1517
BstNI	CCWGG	4 cut(s)	718, 1882, 2534, 2727
BstNSI	RCATGY	5 cut(s)	1136, 1456, 1515, 1617, 3030
BstSCI	CCNGG	6 cut(s)	716, 1764, 1765, 1880, 2532, 2725
BstSFI	CTRYAG	1 cut(s)	1098
BstUI	CGCG	1 cut(s)	1711
BstV1I	GCAGC	2 cut(s)	1475, 2989
BstV2I	GAAGAC	4 cut(s)	300, 1536, 2196, 2892
BstX2I	RGATCY	1 cut(s)	2621
BstYI	RGATCY	1 cut(s)	2621
Bsu15I	ATCGAT	1 cut(s)	266
BsuRI	GGCC	6 cut(s)	197, 235, 602, 909, 1817, 2413
BsuTUI	ATCGAT	1 cut(s)	266
BtgI	CCRYGG	4 cut(s)	198, 614, 1400, 2478
BtsCI	GGATG	7 cut(s)	726, 910, 1511, 2098, 2260, 2355, 2542
BtsIMutI	CAGTG	5 cut(s)	900, 1710, 1726, 2156, 2433
BveI	ACCTGC	1 cut(s)	1285
CaiI	CAGNNNCTG	1 cut(s)	1475
CciI	TCATGA	2 cut(s)	760, 2227
CfoI	GCGC	4 cut(s)	90, 184, 316, 1713
Cfr13I	GGNCC	7 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710
Cfr9I	CCCGGG	1 cut(s)	1765
ClaI	ATCGAT	1 cut(s)	266
CseI	GACGC	2 cut(s)	16, 2934
Csp6I	GTAC	6 cut(s)	250, 456, 732, 882, 1351, 1743
CviQI	GTAC	6 cut(s)	250, 456, 732, 882, 1351, 1743
DdeI	CTNAG	6 cut(s)	404, 771, 2088, 2487, 2646, 2865
DraIII	CACNNNGTG	1 cut(s)	422
DrdI	GACNNNNNNGTC	2 cut(s)	100, 2456
DseDI	GACNNNNNNGTC	2 cut(s)	100, 2456
EaeI	YGGCCR	4 cut(s)	195, 600, 1815, 2411
Eam1104I	CTCTTC	1 cut(s)	1852
EarI	CTCTTC	1 cut(s)	1852
EciI	GGCGGA	2 cut(s)	45, 2479
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	4 cut(s)	198, 1400, 2510, 2810
Eco24I	GRGCYC	1 cut(s)	177
Eco32I	GATATC	2 cut(s)	229, 1116
Eco47I	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
Eco47III	AGCGCT	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	7 cut(s)	1071, 1158, 1194, 1261, 1306, 1443, 2610
Eco88I	CYCGRG	1 cut(s)	1765
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	4 cut(s)	716, 1880, 2532, 2725
EcoRV	GATATC	2 cut(s)	229, 1116
EcoT14I	CCWWGG	4 cut(s)	198, 1400, 2510, 2810
EcoT22I	ATGCAT	2 cut(s)	1367, 2615
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	4 cut(s)	198, 1400, 2510, 2810
FalI	AAGNNNNNCTT	8 cut(s)	74, 106, 1103, 1135, 2010, 2042, 2115, 2147
FaqI	GGGAC	3 cut(s)	1457, 1748, 2488
FauI	CCCGC	2 cut(s)	1332, 1618
FauNDI	CATATG	1 cut(s)	2250
FbaI	TGATCA	4 cut(s)	385, 1246, 1732, 1747
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	5 cut(s)	1464, 1709, 2292, 2851, 3003
FokI	GGATG	7 cut(s)	733, 897, 1518, 2105, 2267, 2362, 2549
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	1464, 1709, 2292, 2851, 3003
GlaI	GCGC	4 cut(s)	89, 183, 315, 1712
GluI	GCNGC	5 cut(s)	1464, 1709, 2292, 2851, 3003
GsuI	CTGGAG	3 cut(s)	263, 1020, 1452
HaeII	RGCGCY	2 cut(s)	91, 317
HaeIII	GGCC	6 cut(s)	197, 235, 602, 909, 1817, 2413
HapII	CCGG	1 cut(s)	1766
HgaI	GACGC	2 cut(s)	16, 2934
HhaI	GCGC	4 cut(s)	90, 184, 316, 1713
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	4 cut(s)	88, 182, 314, 1711
HinP1I	GCGC	4 cut(s)	88, 182, 314, 1711
HincII	GTYRAC	3 cut(s)	15, 61, 1419
HindII	GTYRAC	3 cut(s)	15, 61, 1419
HindIII	AAGCTT	3 cut(s)	692, 2339, 2695
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	1766
HphI	GGTGA	6 cut(s)	179, 627, 706, 2024, 2921, 2922
Hpy99I	CGWCG	4 cut(s)	10, 106, 109, 112
HpyAV	CCTTC	5 cut(s)	163, 719, 2234, 2728, 2943
HpyCH4III	ACNGT	9 cut(s)	19, 431, 996, 1070, 1721, 2081, 2437, 2942, 2990
HpyCH4IV	ACGT	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 47, 96, 181, 977, 1517
HpyF3I	CTNAG	6 cut(s)	404, 771, 2088, 2487, 2646, 2865
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	4 cut(s)	88, 182, 314, 1711
KpnI	GGTACC	1 cut(s)	253
Ksp22I	TGATCA	4 cut(s)	385, 1246, 1732, 1747
KspAI	GTTAAC	1 cut(s)	15
LguI	GCTCTTC	1 cut(s)	1852
LmnI	GCTCC	9 cut(s)	59, 172, 244, 461, 547, 1196, 1471, 2443, 2499
Lsp1109I	GCAGC	2 cut(s)	1475, 2989
LweI	GCATC	5 cut(s)	169, 458, 563, 1359, 2785
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	6 cut(s)	1489, 2368, 2505, 2515, 2660, 2874
MbiI	CCGCTC	1 cut(s)	247
MflI	RGATCY	1 cut(s)	2621
MhlI	GDGCHC	4 cut(s)	177, 1238, 2077, 2496
MlsI	TGGCCA	3 cut(s)	197, 1817, 2413
MluNI	TGGCCA	3 cut(s)	197, 1817, 2413
MlyI	GAGTC	5 cut(s)	884, 2239, 2777, 2794, 2906
MmeI	TCCRAC	2 cut(s)	90, 2711
Mox20I	TGGCCA	3 cut(s)	197, 1817, 2413
Mph1103I	ATGCAT	2 cut(s)	1367, 2615
MroXI	GAANNNNTTC	4 cut(s)	693, 1182, 1274, 1699
MscI	TGGCCA	3 cut(s)	197, 1817, 2413
MslI	CAYNNNNRTG	6 cut(s)	285, 719, 844, 2082, 2253, 3045
Msp20I	TGGCCA	3 cut(s)	197, 1817, 2413
MspA1I	CMGCKG	4 cut(s)	213, 1214, 1339, 2853
MspI	CCGG	1 cut(s)	1766
MspR9I	CCNGG	6 cut(s)	718, 1766, 1767, 1882, 2534, 2727
Mva1269I	GAATGC	1 cut(s)	2615
MvaI	CCWGG	4 cut(s)	718, 1882, 2534, 2727
MvnI	CGCG	1 cut(s)	1711
MwoI	GCNNNNNNNGC	6 cut(s)	43, 47, 96, 181, 977, 1517
NciI	CCSGG	2 cut(s)	1766, 1767
NcoI	CCATGG	2 cut(s)	198, 1400
NdeI	CATATG	1 cut(s)	2250
NheI	GCTAGC	1 cut(s)	800
NlaIV	GGNNCC	4 cut(s)	251, 463, 908, 2476
NmeAIII	GCCGAG	3 cut(s)	628, 997, 1102
NmuCI	GTSAC	1 cut(s)	2368
NsiI	ATGCAT	2 cut(s)	1367, 2615
NspI	RCATGY	5 cut(s)	1136, 1456, 1515, 1617, 3030
PaeI	GCATGC	2 cut(s)	1136, 1515
PagI	TCATGA	2 cut(s)	760, 2227
PciSI	GCTCTTC	1 cut(s)	1852
PctI	GAATGC	1 cut(s)	2615
PdmI	GAANNNNTTC	4 cut(s)	693, 1182, 1274, 1699
PflFI	GACNNNGTC	1 cut(s)	1085
PflMI	CCANNNNNTGG	3 cut(s)	490, 2420, 3064
PkrI	GCNGC	5 cut(s)	1465, 1710, 2293, 2852, 3004
PleI	GAGTC	5 cut(s)	883, 2239, 2776, 2794, 2905
PpsI	GAGTC	5 cut(s)	883, 2239, 2776, 2794, 2905
Ppu21I	YACGTR	1 cut(s)	326
PshBI	ATTAAT	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	4 cut(s)	716, 1880, 2532, 2725
PspGI	CCWGG	4 cut(s)	716, 1880, 2532, 2725
PspN4I	GGNNCC	4 cut(s)	251, 463, 908, 2476
PspPI	GGNCC	7 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710
PsrI	GAACNNNNNNTAC	4 cut(s)	498, 530, 1516, 1548
PstI	CTGCAG	1 cut(s)	1102
PstNI	CAGNNNCTG	1 cut(s)	1475
PsuI	RGATCY	1 cut(s)	2621
PsyI	GACNNNGTC	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	1214
RsaI	GTAC	6 cut(s)	251, 457, 733, 883, 1352, 1744
RsaNI	GTAC	6 cut(s)	250, 456, 732, 882, 1351, 1743
RseI	CAYNNNNRTG	6 cut(s)	285, 719, 844, 2082, 2253, 3045
SacI	GAGCTC	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	1852
SatI	GCNGC	5 cut(s)	1464, 1709, 2292, 2851, 3003
Sau96I	GGNCC	7 cut(s)	234, 907, 1830, 2161, 2475, 2701, 2710
ScaI	AGTACT	1 cut(s)	883
SchI	GAGTC	5 cut(s)	884, 2239, 2777, 2794, 2906
ScrFI	CCNGG	6 cut(s)	718, 1766, 1767, 1882, 2534, 2727
SduI	GDGCHC	4 cut(s)	177, 1238, 2077, 2496
SfaNI	GCATC	5 cut(s)	169, 458, 563, 1359, 2785
SfcI	CTRYAG	1 cut(s)	1098
SinI	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
SmaI	CCCGGG	1 cut(s)	1767
SmiMI	CAYNNNNRTG	6 cut(s)	285, 719, 844, 2082, 2253, 3045
SmlI	CTYRAG	3 cut(s)	259, 2402, 2880
SmoI	CTYRAG	3 cut(s)	259, 2402, 2880
SphI	GCATGC	2 cut(s)	1136, 1515
SspI	AATATT	1 cut(s)	1441
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	6 cut(s)	716, 1764, 1765, 1880, 2532, 2725
StyI	CCWWGG	4 cut(s)	198, 1400, 2510, 2810
TaaI	ACNGT	9 cut(s)	19, 431, 996, 1070, 1721, 2081, 2437, 2942, 2990
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	7 cut(s)	69, 177, 266, 1312, 1386, 1606, 1799
TatI	WGTACW	3 cut(s)	455, 881, 1742
TauI	GCSGC	3 cut(s)	1711, 2294, 2853
TscAI	CASTG	5 cut(s)	907, 1710, 1726, 2163, 2440
TseFI	GTSAC	1 cut(s)	2368
TseI	GCWGC	2 cut(s)	1463, 3002
Tsp45I	GTSAC	1 cut(s)	2368
TspGWI	ACGGA	7 cut(s)	39, 46, 239, 603, 2039, 2723, 2735
TspMI	CCCGGG	1 cut(s)	1765
TspRI	CASTG	5 cut(s)	907, 1710, 1726, 2163, 2440
Tth111I	GACNNNGTC	1 cut(s)	1085
Van91I	CCANNNNNTGG	3 cut(s)	490, 2420, 3064
VpaK11BI	GGWCC	5 cut(s)	1830, 2161, 2475, 2701, 2710
VspI	ATTAAT	1 cut(s)	918
XapI	RAATTY	2 cut(s)	2281, 2684
XceI	RCATGY	5 cut(s)	1136, 1456, 1515, 1617, 3030
XmaI	CCCGGG	1 cut(s)	1765
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	4 cut(s)	693, 1182, 1274, 1699
ZrmI	AGTACT	1 cut(s)	883
Zsp2I	ATGCAT	2 cut(s)	1367, 2615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.