Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006091

Physical Location & Seq

Genomic Coordinates Forward (+)

7904097 .. 7905576

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATGATGAGTCGTCGCTATGGAGCCAAGCTAATGGAAACTGCTGTGACTCACAGCCATCTTTTGAATCCTAGGGTTCCTCTCGTGACGGAAAATATTAGGGTTCCGGCGATGGGAGTCGTGAGAGTTTTCAGCAAGATGACATTTGAGAAGAAGAAAACTACGGAGGAGAAAGGATCTAGCGGTGGCAAGGCTGATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGCTACTGGGGAGTGAAGCCGATGAAGATCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTAGGCCATGGGAGACATATAAATCAGATCTGACTATAGATTTGAAGAAGCATCATGTTCCATCGACTTTACCGGACAAACTAGCTTATTGGACCGTGAAATCTCTTCGATGGCCTACCGATCTTTTCTTCCAGAGGCGGTACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGATGTTAGTACACTGCAAATCGCTTCGACGGTTTGAACAAAGCGGTGGTTGGATCAAAGCCCTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATTCATGGAAGTCGCGAAACCTAATTGGTACGAACGAGCTCTTGTGATTGCCGTTCAAGGCATTTTCTTCAATGCTTATTTCCTTGGATACCTAATTTCTCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAATGGTAACATCGAAAATGTGCCTGCACCGGCTATTGCCATTGATTACTGGAGACTTGAAGCTGATGCGACGCTTCGTGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGATGTTAACCACTATGCATCCGATATTCATTACCAAGGTCGTGAGCTAAAAGAAGCTCCAGCTCCCATTGGATATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009060 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0010230 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

325

Amino Acids

37.43

Weight (kDa)

8.55

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AOX	PF01786	115 - 306	2.6e-84	Alternative oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32350 AT1G32350 AT3G22360 AT3G22370 AT3G27620 AT5G63625 AT5G64687 AT5G64687
fragaria_vesca	FvH4_5g24160
malus_domestica	MD00G1148200.v1.1
prunus_persica	Prupe.5G018700_v2.0.a1
pyrus_communis	pycom16g25550
rosa_chinensis	RchiOBHm_Chr7g0213861 RchiOBHm_Chr7g0213931
rosa_laevigata	RLG00000002775
rosa_multiflora	Rmu_co8428533.1_g000001 Rmu_sc0000328.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245650 Rroxscaffold_3G00245670
rosa_rugosa	Rorug07G0144800
rosa_samantha	Rh7AG277100 Rh7AG277800 Rh7BG271200 Rh7CG296100 Rh7CG296900 Rh7DG283500
rosa_wichuraiana	Rw7G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	611
AciI	CCGC	4 cut(s)	183, 433, 473, 537
AclWI	GGATC	2 cut(s)	184, 554
AcsI	RAATTY	1 cut(s)	701
AfaI	GTAC	3 cut(s)	437, 504, 626
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	7 cut(s)	67, 340, 530, 563, 653, 667, 836
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	8 cut(s)	31, 231, 380, 635, 839, 943, 953, 959
AluI	AGCT	8 cut(s)	31, 231, 380, 635, 839, 943, 953, 959
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	2 cut(s)	302, 823
AlwI	GGATC	2 cut(s)	184, 554
AoxI	GGCC	2 cut(s)	299, 407
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	701
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AseI	ATTAAT	1 cut(s)	221
AspA2I	CCTAGG	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	889
AspS9I	GGNCC	2 cut(s)	387, 871
AsuHPI	GGTGA	2 cut(s)	250, 884
AvaII	GGWCC	2 cut(s)	387, 871
AvrII	CCTAGG	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	637
BauI	CACGAG	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	5 cut(s)	66, 106, 263, 364, 399
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	1 cut(s)	480
BciVI	GTATCC	2 cut(s)	677, 716
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	302, 823
BfaI	CTAG	4 cut(s)	72, 180, 377, 458
BfmI	CTRYAG	1 cut(s)	330
BfuI	GTATCC	2 cut(s)	677, 716
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	1 cut(s)	471
BlnI	CCTAGG	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	2 cut(s)	387, 871
BmgT120I	GGNCC	2 cut(s)	387, 871
BmiI	GGNNCC	4 cut(s)	25, 78, 105, 477
BmrFI	CCNGG	1 cut(s)	480
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	6 cut(s)	355, 431, 444, 832, 898, 923
BmuI	ACTGGG	1 cut(s)	244
BpmI	CTGGAG	2 cut(s)	847, 939
BpuEI	CTTGAG	1 cut(s)	749
BsaBI	GATNNNNATC	1 cut(s)	254
BsaJI	CCNNGG	4 cut(s)	71, 302, 679, 931
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	805
Bse1I	ACTGG	2 cut(s)	239, 830
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	71, 302, 679, 931
BseGI	GGATG	3 cut(s)	446, 501, 914
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	2 cut(s)	239, 830
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	786
Bsh1236I	CGCG	1 cut(s)	611
BshFI	GGCC	2 cut(s)	301, 409
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	3 cut(s)	107, 368, 806
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	302, 823
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	2 cut(s)	301, 409
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	6 cut(s)	176, 196, 255, 322, 415, 546
Bsp19I	CCATGG	1 cut(s)	302
Bsp68I	TCGCGA	1 cut(s)	611
BspACI	CCGC	4 cut(s)	183, 433, 473, 537
BspANI	GGCC	2 cut(s)	301, 409
BspCNI	CTCAG	1 cut(s)	748
BspFNI	CGCG	1 cut(s)	611
BspLI	GGNNCC	4 cut(s)	25, 78, 105, 477
BspPI	GGATC	2 cut(s)	184, 554
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	239, 830
BssAI	RCCGGY	1 cut(s)	805
BssECI	CCNNGG	4 cut(s)	71, 302, 679, 931
BssMI	GATC	6 cut(s)	176, 196, 255, 322, 415, 546
BssSI	CACGAG	1 cut(s)	83
BssT1I	CCWWGG	4 cut(s)	71, 302, 679, 931
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	4 cut(s)	391, 466, 525, 896
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	801
BstDEI	CTNAG	1 cut(s)	756
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	3 cut(s)	446, 501, 914
BstFNI	CGCG	1 cut(s)	611
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	6 cut(s)	179, 199, 258, 325, 418, 549
BstMAI	GTCTC	2 cut(s)	302, 823
BstMBI	GATC	6 cut(s)	176, 196, 255, 322, 415, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	884
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	482
BstX2I	RGATCY	2 cut(s)	176, 322
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	2 cut(s)	176, 322
BsuI	GTATCC	2 cut(s)	677, 716
BsuRI	GGCC	2 cut(s)	301, 409
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	125
BtsCI	GGATG	3 cut(s)	446, 501, 914
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	505, 753
BtuMI	TCGCGA	1 cut(s)	611
Cac8I	GCNNGC	1 cut(s)	801
CfoI	GCGC	1 cut(s)	889
Cfr10I	RCCGGY	1 cut(s)	805
Cfr13I	GGNCC	2 cut(s)	387, 871
CseI	GACGC	1 cut(s)	856
Csp6I	GTAC	3 cut(s)	436, 503, 625
CviAII	CATG	4 cut(s)	303, 350, 601, 865
CviQI	GTAC	3 cut(s)	436, 503, 625
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	6 cut(s)	178, 198, 257, 324, 417, 548
DpnII	GATC	6 cut(s)	176, 196, 255, 322, 415, 546
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	635
Eco130I	CCWWGG	4 cut(s)	71, 302, 679, 931
Eco24I	GRGCYC	1 cut(s)	637
Eco32I	GATATC	1 cut(s)	971
Eco47I	GGWCC	2 cut(s)	387, 871
Eco53kI	GAGCTC	1 cut(s)	635
EcoICRI	GAGCTC	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	971
EcoT14I	CCWWGG	4 cut(s)	71, 302, 679, 931
EcoT22I	ATGCAT	2 cut(s)	588, 916
EcoT38I	GRGCYC	1 cut(s)	637
ErhI	CCWWGG	4 cut(s)	71, 302, 679, 931
FaeI	CATG	4 cut(s)	306, 353, 604, 868
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FatI	CATG	4 cut(s)	302, 349, 600, 864
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	3 cut(s)	453, 508, 901
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	4 cut(s)	72, 180, 377, 458
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	1 cut(s)	471
GsuI	CTGGAG	2 cut(s)	847, 939
HaeIII	GGCC	2 cut(s)	301, 409
HapII	CCGG	3 cut(s)	107, 368, 806
HgaI	GACGC	1 cut(s)	856
HhaI	GCGC	1 cut(s)	889
Hin1II	CATG	4 cut(s)	306, 353, 604, 868
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HinfI	GANTC	4 cut(s)	10, 49, 67, 117
HpaI	GTTAAC	1 cut(s)	904
HpaII	CCGG	3 cut(s)	107, 368, 806
HphI	GGTGA	2 cut(s)	250, 884
Hpy166II	GTNNAC	2 cut(s)	505, 904
Hpy188I	TCNGA	3 cut(s)	322, 327, 919
Hpy188III	TCNNGA	6 cut(s)	85, 121, 427, 610, 854, 938
Hpy8I	GTNNAC	2 cut(s)	505, 904
Hpy99I	CGWCG	3 cut(s)	18, 525, 850
HpyCH4III	ACNGT	4 cut(s)	391, 466, 525, 896
HpyCH4V	TGCA	6 cut(s)	444, 470, 510, 586, 803, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	884
HpyF3I	CTNAG	1 cut(s)	756
Hsp92II	CATG	4 cut(s)	306, 353, 604, 868
HspAI	GCGC	1 cut(s)	887
Ksp22I	TGATCA	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	904
Kzo9I	GATC	6 cut(s)	176, 196, 255, 322, 415, 546
LmnI	GCTCC	4 cut(s)	23, 214, 958, 964
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	6 cut(s)	355, 431, 444, 832, 898, 923
MaeI	CTAG	4 cut(s)	72, 180, 377, 458
MaeIII	GTNAC	4 cut(s)	46, 85, 203, 782
MalI	GATC	6 cut(s)	178, 198, 257, 324, 417, 548
MboI	GATC	6 cut(s)	176, 196, 255, 322, 415, 546
MflI	RGATCY	2 cut(s)	176, 322
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	4 cut(s)	218, 619, 690, 701
MlyI	GAGTC	3 cut(s)	19, 43, 126
MmeI	TCCRAC	3 cut(s)	469, 524, 700
MnlI	CCTC	5 cut(s)	90, 160, 423, 485, 724
Mph1103I	ATGCAT	2 cut(s)	588, 916
MseI	TTAA	4 cut(s)	221, 590, 765, 903
MslI	CAYNNNNRTG	2 cut(s)	894, 897
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	3 cut(s)	107, 368, 806
MspR9I	CCNGG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	480
MvnI	CGCG	1 cut(s)	611
MwoI	GCNNNNNNNGC	1 cut(s)	884
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	6 cut(s)	176, 196, 255, 322, 415, 546
NlaIII	CATG	4 cut(s)	306, 353, 604, 868
NlaIV	GGNNCC	4 cut(s)	25, 78, 105, 477
NmuCI	GTSAC	2 cut(s)	46, 85
NruI	TCGCGA	1 cut(s)	611
NsiI	ATGCAT	2 cut(s)	588, 916
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	67
PfoI	TCCNGGA	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	3 cut(s)	18, 43, 125
PpsI	GAGTC	3 cut(s)	18, 43, 125
PshBI	ATTAAT	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	4 cut(s)	25, 78, 105, 477
PspPI	GGNCC	2 cut(s)	387, 871
PsuI	RGATCY	2 cut(s)	176, 322
RruI	TCGCGA	1 cut(s)	611
RsaI	GTAC	3 cut(s)	437, 504, 626
RsaNI	GTAC	3 cut(s)	436, 503, 625
RseI	CAYNNNNRTG	2 cut(s)	894, 897
SacI	GAGCTC	1 cut(s)	637
SaqAI	TTAA	4 cut(s)	221, 590, 765, 903
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	6 cut(s)	176, 196, 255, 322, 415, 546
Sau96I	GGNCC	2 cut(s)	387, 871
SchI	GAGTC	3 cut(s)	19, 43, 126
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	6 cut(s)	355, 431, 444, 832, 898, 923
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	387, 871
SmiMI	CAYNNNNRTG	2 cut(s)	894, 897
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
Sse9I	AATT	4 cut(s)	218, 619, 690, 701
SsiI	CCGC	4 cut(s)	183, 433, 473, 537
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	4 cut(s)	72, 180, 377, 458
SstI	GAGCTC	1 cut(s)	637
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	4 cut(s)	71, 302, 679, 931
TaaI	ACNGT	4 cut(s)	391, 466, 525, 896
TaqI	TCGA	5 cut(s)	359, 403, 520, 774, 789
TasI	AATT	4 cut(s)	218, 619, 690, 701
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	4 cut(s)	221, 590, 765, 903
Tru9I	TTAA	4 cut(s)	221, 590, 765, 903
TscAI	CASTG	2 cut(s)	512, 760
TseFI	GTSAC	2 cut(s)	46, 85
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	2 cut(s)	46, 85
TspDTI	ATGAA	4 cut(s)	266, 589, 897, 914
TspGWI	ACGGA	4 cut(s)	104, 179, 453, 863
TspRI	CASTG	2 cut(s)	512, 760
VpaK11BI	GGWCC	2 cut(s)	387, 871
VspI	ATTAAT	1 cut(s)	221
XapI	RAATTY	1 cut(s)	701
XmaJI	CCTAGG	1 cut(s)	71
XspI	CTAG	4 cut(s)	72, 180, 377, 458
Zsp2I	ATGCAT	2 cut(s)	588, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.