Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006091

Physical Location & Seq

Genomic Coordinates Forward (+)

25858584 .. 25861909

Gene Structure 3326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64687.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAGATTTGCTAGCACGATTACTTTGGGAGAGAAAGCTTCGACTAAGGAGGAGGACGCGAATCAGAGGAAAACAGAGAAGGAATCCACCGGTGGAGACCAAGGAATCGCGAATCAGAGGAAAACAGAGAACGAATCCACCGGTGGAGATCAAGGAATCGCGATAATAAATATCAAAGTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

61

Amino Acids

6.57

Weight (kDa)

5.31

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32350 AT1G32350 AT3G22360 AT3G22370 AT3G27620 AT5G63625 AT5G64687 AT5G64687
fragaria_vesca	FvH4_5g24160
malus_domestica	MD00G1148200.v1.1
prunus_persica	Prupe.5G018700_v2.0.a1
pyrus_communis	pycom16g25550
rosa_chinensis	RchiOBHm_Chr7g0213861 RchiOBHm_Chr7g0213931
rosa_laevigata	RLG00000002775
rosa_multiflora	Rmu_co8428533.1_g000001 Rmu_sc0000328.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245650 Rroxscaffold_3G00245670
rosa_rugosa	Rorug07G0144800
rosa_samantha	Rh7AG277100 Rh7AG277800 Rh7BG271200 Rh7CG296100 Rh7CG296900 Rh7DG283500
rosa_wichuraiana	Rw7G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	59, 110, 161
AgeI	ACCGGT	2 cut(s)	89, 140
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	90
AsiGI	ACCGGT	2 cut(s)	89, 140
AsuNHI	GCTAGC	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	12
BmtI	GCTAGC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	2 cut(s)	89, 140
Bse118I	RCCGGY	2 cut(s)	89, 140
BseDI	CCNNGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	65
Bsh1236I	CGCG	3 cut(s)	59, 110, 161
BshTI	ACCGGT	2 cut(s)	89, 140
BsiSI	CCGG	2 cut(s)	90, 141
BsmAI	GTCTC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	148
Bsp68I	TCGCGA	2 cut(s)	110, 161
BspFNI	CGCG	3 cut(s)	59, 110, 161
BspOI	GCTAGC	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	90
BsrFI	RCCGGY	2 cut(s)	89, 140
BssAI	RCCGGY	2 cut(s)	89, 140
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	45
BstFNI	CGCG	3 cut(s)	59, 110, 161
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	148
BstUI	CGCG	3 cut(s)	59, 110, 161
BtuMI	TCGCGA	2 cut(s)	110, 161
Cac8I	GCNNGC	1 cut(s)	13
Cfr10I	RCCGGY	2 cut(s)	89, 140
CseI	GACGC	1 cut(s)	65
CspAI	ACCGGT	2 cut(s)	89, 140
CviJI	RGCY	1 cut(s)	38
CviKI_1	RGCY	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaiI	YATR	2 cut(s)	182, 184
FspBI	CTAG	1 cut(s)	12
HapII	CCGG	2 cut(s)	90, 141
HgaI	GACGC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	6 cut(s)	61, 83, 105, 112, 134, 156
HpaII	CCGG	2 cut(s)	90, 141
Hpy188I	TCNGA	2 cut(s)	66, 117
Hpy188III	TCNNGA	2 cut(s)	109, 160
HpyAV	CCTTC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	148
LpnPI	CCDG	2 cut(s)	103, 154
MaeI	CTAG	1 cut(s)	12
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MnlI	CCTC	4 cut(s)	43, 46, 60, 111
MspI	CCGG	2 cut(s)	90, 141
MvnI	CGCG	3 cut(s)	59, 110, 161
NdeII	GATC	1 cut(s)	148
NheI	GCTAGC	1 cut(s)	11
NruI	TCGCGA	2 cut(s)	110, 161
PfeI	GAWTC	6 cut(s)	61, 83, 105, 112, 134, 156
PinAI	ACCGGT	2 cut(s)	89, 140
RruI	TCGCGA	2 cut(s)	110, 161
Sau3AI	GATC	1 cut(s)	148
SetI	ASST	1 cut(s)	40
SgeI	CNNG	9 cut(s)	24, 28, 70, 102, 113, 121, 153, 164, 172
SgrAI	CRCCGGYG	2 cut(s)	89, 140
SspMI	CTAG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	100
TaqI	TCGA	1 cut(s)	41
TfiI	GAWTC	6 cut(s)	61, 83, 105, 112, 134, 156
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.