Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006091

Physical Location & Seq

Genomic Coordinates Reverse (-)

10229045 .. 10230707

Gene Structure 1663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGATCACTACATTACTCCGTCGCTCTCTCCTTGACGCATCAAAGCAAGCGACATCCATTAATGGAATTCTATTTCACCAACTTGCTCCAGCGAAATATTTTAGGGTTCCGGCAGTGGGAGGTCTGAGAGATTTCAGCAAGATGACATTTGAAAAGAAGAAAACATCGGAAGAAGAGGAAGGATCCGGTGACGGCGTCAAGGTTAATGATCAAGGTAACAAAGGGGAACAATTAATAGTTAGTTATTGGGGCGTGAAGCCAATGAAAATCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTCGGCCATGGGAGACTTATAAAGCTGATCTAACGATAGATTTGAAGAAGCATCATGTTCCTTCAACTTTACCGGACAAAATAGCTTATTGGATGGTTAAATCTCTTCGATGGCCTACCGATCTTTTCTTCCAGAGGAGGTATGGTTGCCGAGCGATTATGCTAGAGACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGATGCTTATGCACTTCAAATCTCTCAGGCGTTTCGAACAAAGTGGGGGTTGGATCAAAGCCCTTCTCGAAGAAGCAGAGAATGAGAGAATGCACTTAATGACATTCATGGAAGTAGCGAAACCCAAATGGTACGAACGAGCTCTTGTGATCTCTGTTCAAGGGGTTTTCTTCAACGCTTATTTAATCGGATACATAATCTCTCCCAAGTTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATACATTCTTACACTGAGTTTCTCAAAGAACTCGATAACGGTAACATCGAAAATGTTCCTGCACCGGCTATCGCTGTTGATTACTGGAGGCTTGAAGCTGATGCAACGCTTCGTGATGTTGTCATGGTGGTTCGTGCTGATGAGGCGCATCACCGTGACGTTAACCACTATGCATCCGATATTCACTACCAAGGTCATGAGCTGAAAGAAGCTCCAGCTCCTATAGGATATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009060 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0010230 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

329

Amino Acids

37.82

Weight (kDa)

6.91

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AOX	PF01786	119 - 310	1e-84	Alternative oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32350 AT1G32350 AT3G22360 AT3G22370 AT3G27620 AT5G63625 AT5G64687 AT5G64687
fragaria_vesca	FvH4_5g24160
malus_domestica	MD00G1148200.v1.1
prunus_persica	Prupe.5G018700_v2.0.a1
pyrus_communis	pycom16g25550
rosa_chinensis	RchiOBHm_Chr7g0213861 RchiOBHm_Chr7g0213931
rosa_laevigata	RLG00000002775
rosa_multiflora	Rmu_co8428533.1_g000001 Rmu_sc0000328.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245650 Rroxscaffold_3G00245670
rosa_rugosa	Rorug07G0144800
rosa_samantha	Rh7AG277100 Rh7AG277800 Rh7BG271200 Rh7CG296100 Rh7CG296900 Rh7DG283500
rosa_wichuraiana	Rw7G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	3 cut(s)	177, 190, 566
AcoI	YGGCCR	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	7 cut(s)	152, 352, 372, 523, 665, 679, 848
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	7 cut(s)	332, 392, 647, 851, 955, 965, 971
AluI	AGCT	7 cut(s)	332, 392, 647, 851, 955, 965, 971
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	2 cut(s)	314, 467
AlwI	GGATC	3 cut(s)	177, 190, 566
AoxI	GGCC	2 cut(s)	311, 419
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	66
AseI	ATTAAT	2 cut(s)	60, 233
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	901
AsuHPI	GGTGA	4 cut(s)	68, 200, 262, 896
AsuII	TTCGAA	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	649
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	3 cut(s)	275, 394, 411
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	2 cut(s)	689, 728
BclI	TGATCA	2 cut(s)	3, 208
BcoDI	GTCTC	2 cut(s)	314, 467
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	975
BfuI	GTATCC	2 cut(s)	689, 728
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	492
BmiI	GGNNCC	3 cut(s)	108, 184, 489
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	6 cut(s)	47, 367, 498, 844, 910, 935
BpmI	CTGGAG	3 cut(s)	72, 859, 951
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	761
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	314, 943
BsaWI	WCCGGW	2 cut(s)	185, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	1 cut(s)	842
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	314, 943
BseGI	GGATG	4 cut(s)	53, 405, 513, 926
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	3 cut(s)	116, 544, 759
BseNI	ACTGG	1 cut(s)	842
BseRI	GAGGAG	1 cut(s)	457
BseXI	GCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	798
BshFI	GGCC	2 cut(s)	313, 421
BsiHKAI	GWGCWC	1 cut(s)	649
BsiSI	CCGG	4 cut(s)	110, 186, 380, 818
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	314, 467
BsmBI	CGTCTC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	2 cut(s)	313, 421
Bsp119I	TTCGAA	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	7 cut(s)	3, 182, 208, 334, 427, 558, 654
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	2 cut(s)	313, 421
BspCNI	CTCAG	3 cut(s)	117, 543, 760
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	3 cut(s)	108, 184, 489
BspPI	GGATC	3 cut(s)	177, 190, 566
BspT104I	TTCGAA	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	817
BsrI	ACTGG	1 cut(s)	842
BssAI	RCCGGY	1 cut(s)	817
BssECI	CCNNGG	2 cut(s)	314, 943
BssMI	GATC	7 cut(s)	3, 182, 208, 334, 427, 558, 654
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	314, 943
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	478, 794, 908
Bst6I	CTCTTC	2 cut(s)	168, 417
BstACI	GRCGYC	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	125, 530, 768
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	4 cut(s)	53, 405, 513, 926
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	7 cut(s)	6, 185, 211, 337, 430, 561, 657
BstMAI	GTCTC	2 cut(s)	314, 467
BstMBI	GATC	7 cut(s)	3, 182, 208, 334, 427, 558, 654
BstMWI	GCNNNNNNNGC	1 cut(s)	896
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	975
BstV1I	GCAGC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuI	GTATCC	2 cut(s)	689, 728
BsuRI	GGCC	2 cut(s)	313, 421
BtgI	CCRYGG	1 cut(s)	314
BtsCI	GGATG	4 cut(s)	53, 405, 513, 926
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	3 cut(s)	120, 765, 985
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	1 cut(s)	949
CfoI	GCGC	1 cut(s)	901
Cfr10I	RCCGGY	1 cut(s)	817
CseI	GACGC	2 cut(s)	44, 184
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	5 cut(s)	315, 362, 613, 877, 950
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	3 cut(s)	125, 530, 768
DpnI	GATC	7 cut(s)	5, 184, 210, 336, 429, 560, 656
DpnII	GATC	7 cut(s)	3, 182, 208, 334, 427, 558, 654
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	168, 417
EarI	CTCTTC	2 cut(s)	168, 417
Ecl136II	GAGCTC	1 cut(s)	647
Eco130I	CCWWGG	2 cut(s)	314, 943
Eco24I	GRGCYC	1 cut(s)	649
Eco32I	GATATC	1 cut(s)	983
Eco53kI	GAGCTC	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	983
EcoT14I	CCWWGG	2 cut(s)	314, 943
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	1 cut(s)	649
ErhI	CCWWGG	2 cut(s)	314, 943
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	5 cut(s)	318, 365, 616, 880, 953
FatI	CATG	5 cut(s)	314, 361, 612, 876, 949
FbaI	TGATCA	2 cut(s)	3, 208
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	4 cut(s)	40, 412, 520, 913
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	1 cut(s)	483
GsuI	CTGGAG	3 cut(s)	72, 859, 951
HaeIII	GGCC	2 cut(s)	313, 421
HapII	CCGG	4 cut(s)	110, 186, 380, 818
HgaI	GACGC	2 cut(s)	44, 184
HhaI	GCGC	1 cut(s)	901
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	5 cut(s)	318, 365, 616, 880, 953
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HpaI	GTTAAC	1 cut(s)	916
HpaII	CCGG	4 cut(s)	110, 186, 380, 818
HphI	GGTGA	4 cut(s)	68, 200, 262, 896
Hpy166II	GTNNAC	1 cut(s)	916
Hpy188I	TCNGA	4 cut(s)	126, 169, 695, 931
Hpy188III	TCNNGA	4 cut(s)	439, 572, 866, 950
Hpy8I	GTNNAC	1 cut(s)	916
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	3 cut(s)	173, 378, 578
HpyCH4III	ACNGT	3 cut(s)	478, 794, 908
HpyCH4IV	ACGT	1 cut(s)	912
HpyCH4V	TGCA	6 cut(s)	482, 517, 598, 815, 857, 926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	896
HpyF3I	CTNAG	3 cut(s)	125, 530, 768
HpySE526I	ACGT	1 cut(s)	912
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	5 cut(s)	318, 365, 616, 880, 953
HspAI	GCGC	1 cut(s)	899
Ksp22I	TGATCA	2 cut(s)	3, 208
KspAI	GTTAAC	1 cut(s)	916
Kzo9I	GATC	7 cut(s)	3, 182, 208, 334, 427, 558, 654
LmnI	GCTCC	3 cut(s)	91, 970, 976
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	6 cut(s)	47, 367, 498, 844, 910, 935
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	1 cut(s)	912
MaeIII	GTNAC	4 cut(s)	188, 215, 794, 908
MalI	GATC	7 cut(s)	5, 184, 210, 336, 429, 560, 656
MboI	GATC	7 cut(s)	3, 182, 208, 334, 427, 558, 654
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	2 cut(s)	66, 230
MmeI	TCCRAC	3 cut(s)	481, 536, 712
MnlI	CCTC	8 cut(s)	113, 169, 435, 438, 497, 736, 834, 889
Mph1103I	ATGCAT	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	7 cut(s)	60, 204, 233, 405, 602, 689, 915
MslI	CAYNNNNRTG	1 cut(s)	906
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	4 cut(s)	110, 186, 380, 818
MspR9I	CCNGG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	896
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	7 cut(s)	3, 182, 208, 334, 427, 558, 654
NlaIII	CATG	5 cut(s)	318, 365, 616, 880, 953
NlaIV	GGNNCC	3 cut(s)	108, 184, 489
NmeAIII	GCCGAG	1 cut(s)	482
NmuCI	GTSAC	2 cut(s)	188, 908
NsiI	ATGCAT	1 cut(s)	928
NspV	TTCGAA	1 cut(s)	540
PagI	TCATGA	1 cut(s)	949
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PctI	GAATGC	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	807
PflFI	GACNNNGTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	484
PshBI	ATTAAT	2 cut(s)	60, 233
PsiI	TTATAA	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	3 cut(s)	108, 184, 489
PsuI	RGATCY	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	906
SacI	GAGCTC	1 cut(s)	649
SaqAI	TTAA	7 cut(s)	60, 204, 233, 405, 602, 689, 915
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	7 cut(s)	3, 182, 208, 334, 427, 558, 654
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	649
SfaNI	GCATC	6 cut(s)	47, 367, 498, 844, 910, 935
SfcI	CTRYAG	1 cut(s)	975
SfuI	TTCGAA	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	906
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	2 cut(s)	66, 230
SsiI	CCGC	1 cut(s)	485
SspI	AATATT	1 cut(s)	98
SspMI	CTAG	1 cut(s)	470
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	2 cut(s)	314, 943
TaaI	ACNGT	3 cut(s)	478, 794, 908
TaiI	ACGT	1 cut(s)	915
TaqI	TCGA	5 cut(s)	415, 540, 573, 786, 801
TasI	AATT	2 cut(s)	66, 230
Tru1I	TTAA	7 cut(s)	60, 204, 233, 405, 602, 689, 915
Tru9I	TTAA	7 cut(s)	60, 204, 233, 405, 602, 689, 915
TscAI	CASTG	2 cut(s)	120, 772
TseFI	GTSAC	2 cut(s)	188, 908
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	2 cut(s)	188, 908
TspDTI	ATGAA	2 cut(s)	278, 601
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	2 cut(s)	120, 772
Tth111I	GACNNNGTC	1 cut(s)	194
VspI	ATTAAT	2 cut(s)	60, 233
XapI	RAATTY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.