Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

11414019 .. 11417888

Gene Structure 3870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0144800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGGGTTAGGGCACGGCCCAATTTGAGCGGCGAAGCCGAAGACGACACCATTCCGCTCATGATTTCGAAGCTCAAGACGGCGTTTCTCCCCGCCGACTTCCAACGCGCCGAGCGGGCCTTACTCGCCAGAGAATCCAATCTGAGGCGAGAAATCGAGAAGCTGAAGAAGGAAAACGCGAGGCTTCTGGAAGACAACCAATTCCGGGAGCTGGCGATGCTGAGAGTGGAGACTGATTCGAAAGGTGTGATCTTTGAGCAGAGGAGGAAGATCAGGGAGCTGGAGACGCAGAAATTGAAGCTCGAGGCGTTGGTTAAGAGCGAGTATGAAGGATGGAAGGGGCTGATTTCGAAGCTGGAGGGAGATGCGAAGAAATTGAGCGGCGAAAAGGGTGTGGGTTTCAGGAGCAGCAATGTTGGTGTGGTGGTGAAATTAGAGAGGGAGTTTGGTGCTAATGAAGTTGGAGGCGTGGCGTCGAGTGCAGGGAGCTCGATTCTCAGTGAAGGAAATGGAGGTGTCAAAGTTTCAGGTATTCGGAAATCTTCATCTGAAGATGCTGGTTTGATTGATAGACATAATGAGTGTGCTCCCAGGGAAATCGAGATGCTGTGTGAGAATTCTGAAATACATAAAGGCACTGGATCTTTGGGTTTGACTGGTGTAGAAAGGAAGCTAAGGGTTCTTAAAAGAAAACCAGCGTCATCTTTAAGTGGTAGTGATGATGAAAACAGGGGTGGCAATTTTAAGAAAGATAAAAACTCAGACAGTGAGATGAAGCAACTCCAGAAGTTGAGCATTCAGCCTGATGGTCCTCTTATCAAGCAATGCACAGAAATACTTGATTTTTCTGGTAGTAATGACTCTGAAATTCAAAATTTACCAAGTCATGAGCAAGTGAACTCAAGGCAATCTGAAGAGAAAATTATGGCAGAACAGACGTCACAACCTTTTCTCAAGGCTCTTATGGAGGTGAGTAGTGCTTTTGATAATGATCCTCATGCCGATCTTAGTTCTAGTTGCAGTTCAAGTTCCTCTGACTCTGAAGATGACTGTCTACTACTATCTGCACTTGATGATATTATGCCAAAAGCCAAAGCAAGAGAGGGGAGCTGTTCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

373

Amino Acids

40.86

Weight (kDa)

5.5

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	941
AccBSI	CCGCTC	4 cut(s)	30, 58, 115, 381
AccI	GTMKAC	1 cut(s)	1054
AccII	CGCG	2 cut(s)	108, 179
AciI	CCGC	5 cut(s)	30, 56, 93, 115, 381
AclWI	GGATC	2 cut(s)	649, 986
AcsI	RAATTY	3 cut(s)	616, 867, 874
AcuI	CTGAAG	4 cut(s)	185, 570, 933, 1062
AcyI	GRCGYC	2 cut(s)	473, 938
AfiI	CCNNNNNNNGG	3 cut(s)	144, 205, 211
AgsI	TTSAA	3 cut(s)	298, 872, 1026
AjnI	CCWGG	1 cut(s)	590
AluBI	AGCT	9 cut(s)	73, 163, 211, 280, 301, 355, 489, 673, 1110
AluI	AGCT	9 cut(s)	73, 163, 211, 280, 301, 355, 489, 673, 1110
Alw21I	GWGCWC	2 cut(s)	491, 589
Alw26I	GTCTC	2 cut(s)	224, 278
AlwI	GGATC	2 cut(s)	649, 986
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	17, 117
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	3 cut(s)	616, 867, 874
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	18, 117, 809
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	439, 982
AsuII	TTCGAA	3 cut(s)	68, 239, 350
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	809
BaeGI	GKGCMC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	491
BbsI	GAAGAC	2 cut(s)	48, 198
Bbv12I	GWGCWC	2 cut(s)	491, 589
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	2 cut(s)	327, 800
BceAI	ACGGC	2 cut(s)	32, 96
BcgI	CGANNNNNNTGC	2 cut(s)	471, 505
BciT130I	CCWGG	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	224, 278
BfaI	CTAG	1 cut(s)	1014
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	31, 382, 409
BlsI	GCNGC	3 cut(s)	32, 383, 410
Bme1390I	CCNGG	2 cut(s)	206, 592
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	18, 117, 809
BmrFI	CCNGG	2 cut(s)	206, 592
BmsI	GCATC	4 cut(s)	207, 355, 544, 594
BpiI	GAAGAC	2 cut(s)	48, 198
BpmI	CTGGAG	3 cut(s)	302, 377, 767
Bpu10I	CCTNAGC	1 cut(s)	674
Bpu14I	TTCGAA	3 cut(s)	68, 239, 350
BpuEI	CTTGAG	3 cut(s)	59, 886, 938
BpuMI	CCSGG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	990
BsaHI	GRCGYC	2 cut(s)	473, 938
BsaJI	CCNNGG	2 cut(s)	590, 591
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 205, 211
Bse1I	ACTGG	2 cut(s)	643, 661
Bse3DI	GCAATG	2 cut(s)	418, 830
Bse8I	GATNNNNATC	1 cut(s)	990
BseBI	CCWGG	1 cut(s)	592
BseDI	CCNNGG	2 cut(s)	590, 591
BseGI	GGATG	1 cut(s)	338
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	3 cut(s)	144, 205, 211
BseMI	GCAATG	2 cut(s)	418, 830
BseMII	CTCAG	4 cut(s)	134, 212, 511, 774
BseNI	ACTGG	2 cut(s)	643, 661
BseRI	GAGGAG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	420
BsgI	GTGCAG	2 cut(s)	501, 1050
Bsh1236I	CGCG	2 cut(s)	108, 179
BshFI	GGCC	2 cut(s)	19, 119
BsiHKAI	GWGCWC	2 cut(s)	491, 589
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	3 cut(s)	144, 205, 211
BsmAI	GTCTC	2 cut(s)	224, 278
BsmBI	CGTCTC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	2 cut(s)	19, 119
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	3 cut(s)	68, 239, 350
Bsp1286I	GDGCHC	3 cut(s)	16, 491, 589
Bsp143I	GATC	5 cut(s)	249, 270, 641, 991, 1003
BspACI	CCGC	5 cut(s)	30, 56, 93, 115, 381
BspANI	GGCC	2 cut(s)	19, 119
BspCNI	CTCAG	4 cut(s)	135, 213, 510, 773
BspFNI	CGCG	2 cut(s)	108, 179
BspHI	TCATGA	2 cut(s)	60, 886
BspPI	GGATC	2 cut(s)	649, 986
BspT104I	TTCGAA	3 cut(s)	68, 239, 350
BsrBI	CCGCTC	4 cut(s)	30, 58, 115, 381
BsrDI	GCAATG	2 cut(s)	418, 830
BsrI	ACTGG	2 cut(s)	643, 661
BssECI	CCNNGG	2 cut(s)	590, 591
BssMI	GATC	5 cut(s)	249, 270, 641, 991, 1003
BssNI	GRCGYC	2 cut(s)	473, 938
Bst2UI	CCWGG	1 cut(s)	592
Bst4CI	ACNGT	2 cut(s)	767, 1052
Bst6I	CTCTTC	1 cut(s)	909
BstACI	GRCGYC	2 cut(s)	473, 938
BstBI	TTCGAA	3 cut(s)	68, 239, 350
BstC8I	GCNNGC	2 cut(s)	117, 213
BstDEI	CTNAG	6 cut(s)	143, 221, 497, 674, 760, 1007
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	2 cut(s)	108, 179
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	5 cut(s)	252, 273, 644, 994, 1006
BstMAI	GTCTC	2 cut(s)	224, 278
BstMBI	GATC	5 cut(s)	249, 270, 641, 991, 1003
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 125, 217, 286, 479
BstNI	CCWGG	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	204, 590
BstSLI	GKGCMC	1 cut(s)	16
BstUI	CGCG	2 cut(s)	108, 179
BstV1I	GCAGC	1 cut(s)	420
BstV2I	GAAGAC	2 cut(s)	48, 198
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
BsuRI	GGCC	2 cut(s)	19, 119
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	3 cut(s)	505, 636, 772
Cac8I	GCNNGC	2 cut(s)	117, 213
CciI	TCATGA	2 cut(s)	60, 886
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	18, 117, 809
CseI	GACGC	3 cut(s)	295, 462, 687
CviAII	CATG	3 cut(s)	61, 887, 998
DdeI	CTNAG	6 cut(s)	143, 221, 497, 674, 760, 1007
DpnI	GATC	5 cut(s)	251, 272, 643, 993, 1005
DpnII	GATC	5 cut(s)	249, 270, 641, 991, 1003
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
Ecl136II	GAGCTC	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	489
Eco57I	CTGAAG	4 cut(s)	185, 570, 933, 1062
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	489
EcoRI	GAATTC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	590
EcoT38I	GRGCYC	1 cut(s)	491
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	3 cut(s)	64, 890, 1001
FaiI	YATR	9 cut(s)	62, 327, 576, 630, 888, 926, 965, 999, 1082
FatI	CATG	3 cut(s)	60, 886, 997
FauI	CCCGC	2 cut(s)	100, 108
FblI	GTMKAC	1 cut(s)	1054
Fnu4HI	GCNGC	3 cut(s)	31, 382, 409
FokI	GGATG	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	3 cut(s)	31, 382, 409
FspBI	CTAG	1 cut(s)	1014
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	31, 382, 409
GsuI	CTGGAG	3 cut(s)	302, 377, 767
HaeIII	GGCC	2 cut(s)	19, 119
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	3 cut(s)	295, 462, 687
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	2 cut(s)	473, 938
Hin1II	CATG	3 cut(s)	64, 890, 1001
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	5 cut(s)	134, 236, 493, 860, 1037
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	439, 982
Hpy166II	GTNNAC	2 cut(s)	898, 1055
Hpy188I	TCNGA	9 cut(s)	144, 537, 550, 622, 763, 865, 913, 1036, 1042
Hpy188III	TCNNGA	8 cut(s)	61, 76, 157, 188, 403, 601, 784, 887
Hpy8I	GTNNAC	2 cut(s)	898, 1055
Hpy99I	CGWCG	1 cut(s)	478
HpyAV	CCTTC	4 cut(s)	163, 323, 331, 497
HpyCH4III	ACNGT	2 cut(s)	767, 1052
HpyCH4IV	ACGT	1 cut(s)	938
HpyCH4V	TGCA	4 cut(s)	482, 828, 1020, 1067
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 125, 217, 286, 479
HpyF3I	CTNAG	6 cut(s)	143, 221, 497, 674, 760, 1007
HpySE526I	ACGT	1 cut(s)	938
Hsp92I	GRCGYC	2 cut(s)	473, 938
Hsp92II	CATG	3 cut(s)	64, 890, 1001
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	249, 270, 641, 991, 1003
LmnI	GCTCC	6 cut(s)	208, 277, 405, 486, 592, 1107
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	4 cut(s)	207, 355, 544, 594
MaeI	CTAG	1 cut(s)	1014
MaeII	ACGT	1 cut(s)	938
MaeIII	GTNAC	1 cut(s)	939
MalI	GATC	5 cut(s)	251, 272, 643, 993, 1005
MbiI	CCGCTC	4 cut(s)	30, 58, 115, 381
MboI	GATC	5 cut(s)	249, 270, 641, 991, 1003
MboII	GAAGA	9 cut(s)	53, 178, 203, 280, 382, 534, 563, 926, 1055
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	3 cut(s)	16, 491, 589
MlyI	GAGTC	2 cut(s)	854, 1031
MmeI	TCCRAC	2 cut(s)	127, 442
MseI	TTAA	4 cut(s)	315, 684, 707, 744
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	2 cut(s)	206, 592
Mva1269I	GAATGC	1 cut(s)	795
MvaI	CCWGG	1 cut(s)	592
MvnI	CGCG	2 cut(s)	108, 179
MwoI	GCNNNNNNNGC	5 cut(s)	116, 125, 217, 286, 479
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	5 cut(s)	249, 270, 641, 991, 1003
NlaIII	CATG	3 cut(s)	64, 890, 1001
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	939
NspV	TTCGAA	3 cut(s)	68, 239, 350
PaeR7I	CTCGAG	1 cut(s)	302
PagI	TCATGA	2 cut(s)	60, 886
PasI	CCCWGGG	1 cut(s)	591
PctI	GAATGC	1 cut(s)	795
PfeI	GAWTC	3 cut(s)	134, 236, 493
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	3 cut(s)	32, 383, 410
PleI	GAGTC	2 cut(s)	854, 1031
PpsI	GAGTC	2 cut(s)	854, 1031
Psp124BI	GAGCTC	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	590
PspPI	GGNCC	3 cut(s)	18, 117, 809
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	641
SacI	GAGCTC	1 cut(s)	491
SaqAI	TTAA	4 cut(s)	315, 684, 707, 744
SatI	GCNGC	3 cut(s)	31, 382, 409
Sau3AI	GATC	5 cut(s)	249, 270, 641, 991, 1003
Sau96I	GGNCC	3 cut(s)	18, 117, 809
SchI	GAGTC	2 cut(s)	854, 1031
ScrFI	CCNGG	2 cut(s)	206, 592
SduI	GDGCHC	3 cut(s)	16, 491, 589
SfaNI	GCATC	4 cut(s)	207, 355, 544, 594
Sfr274I	CTCGAG	1 cut(s)	302
SfuI	TTCGAA	3 cut(s)	68, 239, 350
SinI	GGWCC	1 cut(s)	809
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	4 cut(s)	74, 302, 901, 953
SmoI	CTYRAG	4 cut(s)	74, 302, 901, 953
SsiI	CCGC	5 cut(s)	30, 56, 93, 115, 381
SspMI	CTAG	1 cut(s)	1014
SstI	GAGCTC	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	204, 590
TaaI	ACNGT	2 cut(s)	767, 1052
TaiI	ACGT	1 cut(s)	941
TaqI	TCGA	8 cut(s)	68, 156, 239, 303, 350, 476, 491, 600
TauI	GCSGC	2 cut(s)	33, 384
TfiI	GAWTC	3 cut(s)	134, 236, 493
Tru1I	TTAA	4 cut(s)	315, 684, 707, 744
Tru9I	TTAA	4 cut(s)	315, 684, 707, 744
TscAI	CASTG	3 cut(s)	505, 643, 772
TseFI	GTSAC	1 cut(s)	939
TseI	GCWGC	1 cut(s)	408
Tsp45I	GTSAC	1 cut(s)	939
TspDTI	ATGAA	5 cut(s)	342, 471, 534, 738, 788
TspRI	CASTG	3 cut(s)	505, 643, 772
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	3 cut(s)	616, 867, 874
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	1054
XspI	CTAG	1 cut(s)	1014
ZraI	GACGTC	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.