Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

44378721 .. 44379100

Gene Structure 380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG204500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATCGTTTTTTTATTTTTTATTTTTACTAGGAACACTGCATTATGTCATTCTAGGAAATACCCTTTGAAAGAACCGTTTGTAGAATTGTTGAAGAGCTTGGATACTTTTCCCAATGCATTCACCTATCCTGATACGACTTGCTACCCAGTTGGCTCCACAAATTCGAAGGATTTCTTTAATCTGATTGATGTGTACCTCGATGCTATGTTCTTCCCAAAATATGTGAAGGATTTCCAAACTTTCCAACACGAGGGCTGCCATTATGAGCTCCACAATCTTTCTGAAGACATCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031967 GO:0031974 GO:0031975 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

99

Amino Acids

11.74

Weight (kDa)

5.39

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	70, 94
AluBI	AGCT	2 cut(s)	99, 271
AluI	AGCT	2 cut(s)	99, 271
Alw21I	GWGCWC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	163
Asp700I	GAANNNNTTC	2 cut(s)	173, 233
AsuHPI	GGTGA	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	273
BauI	CACGAG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	30, 54
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	3
BspLI	GGNNCC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	3
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	167
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	196
CviJI	RGCY	4 cut(s)	99, 156, 258, 271
CviKI_1	RGCY	4 cut(s)	99, 156, 258, 271
CviQI	GTAC	1 cut(s)	196
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	273
FaiI	YATR	5 cut(s)	46, 209, 225, 267, 298
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
Fnu4HI	GCNGC	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	259
FspBI	CTAG	2 cut(s)	30, 54
GluI	GCNGC	1 cut(s)	259
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	186, 286
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	163, 223
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	41, 119
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	161, 276
LpnPI	CCDG	2 cut(s)	144, 162
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	30, 54
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	106, 205, 299
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	86, 163
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	2 cut(s)	209, 247
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	2 cut(s)	173, 233
MseI	TTAA	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	173, 233
PkrI	GCNGC	1 cut(s)	260
PsiI	TTATAA	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	259
Sau3AI	GATC	1 cut(s)	3
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	4 cut(s)	101, 128, 201, 273
SfaNI	GCATC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	167
SgeI	CNNG	9 cut(s)	42, 66, 112, 143, 153, 161, 212, 263, 265
Sse9I	AATT	2 cut(s)	86, 163
SspMI	CTAG	2 cut(s)	30, 54
SstI	GAGCTC	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	167, 201
TasI	AATT	2 cut(s)	86, 163
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	258
TspRI	CASTG	1 cut(s)	43
XapI	RAATTY	1 cut(s)	163
XmnI	GAANNNNTTC	2 cut(s)	173, 233
XspI	CTAG	2 cut(s)	30, 54
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.