Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Reverse (-)

24119451 .. 24120634

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30421.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCAGAGGTTGAAGCAGCCATACAAGAGATGTTCCAGGTACCTCATATCCAGGTGATGAAAACTTGTTCCAAACTGAGTAAAATCTATTTGACGGCTATGGTATATGAACTCTATAAAACAGGAATGGGTGAAATTACTTTCGAGAAGTTGGAAATGACAGTATATAATCTGTGTACAAGCAATGGAGAAGCATTTCCTGGACATGATACGCTGTTGAAAGTTGGCTGTAAGCTTGGTGAATGCAGATTTATTCTATGTGAATCAGGAGTAAAGCACAGGTTACAGAAATTACAGCTCAACTTTCCAAGGTTTGTTCTGATTAGACTAGTCACCGCAGGCCATCCTTATTTTAGTAGTTGTATAGCAGTAGTCAAGTATTATGTCATAAAGAGCCTCTTGCAGGGTTTGGGAATGGGCTCAGGTCCTTGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

146

Amino Acids

16.28

Weight (kDa)

8.73

Isoelectric Point (pI)

24.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_Cdc6	PF09079	18 - 102	1.1e-07	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	40
AciI	CCGC	1 cut(s)	336
AfaI	GTAC	2 cut(s)	42, 178
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	14, 220
AhlI	ACTAGT	1 cut(s)	328
AjnI	CCWGG	3 cut(s)	36, 51, 199
AluBI	AGCT	2 cut(s)	235, 298
AluI	AGCT	2 cut(s)	235, 298
AoxI	GGCC	2 cut(s)	340, 432
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	195
Asp718I	GGTACC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	425, 432
AsuHPI	GGTGA	4 cut(s)	67, 143, 251, 325
AvaII	GGWCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	422
BarI	GAAGNNNNNNTAC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	351
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	3 cut(s)	38, 53, 201
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	2 cut(s)	329, 436
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	3 cut(s)	38, 53, 201
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	425, 432
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	3 cut(s)	38, 53, 201
Bpu10I	CCTNAGC	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	308, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	3 cut(s)	38, 53, 201
BseDI	CCNNGG	2 cut(s)	308, 428
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	68, 435
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	2 cut(s)	342, 434
BshNI	GGYRCC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	342, 434
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp1407I	TGTACA	1 cut(s)	176
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	2 cut(s)	342, 434
BspCNI	CTCAG	2 cut(s)	69, 434
BspLI	GGNNCC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	190
BsrGI	TGTACA	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	308, 428
BssT1I	CCWWGG	2 cut(s)	308, 428
Bst2UI	CCWGG	3 cut(s)	38, 53, 201
Bst4CI	ACNGT	1 cut(s)	163
BstAUI	TGTACA	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	77, 421
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	343
BstNI	CCWGG	3 cut(s)	38, 53, 201
BstSCI	CCNGG	3 cut(s)	36, 51, 199
BstV1I	GCAGC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	342, 434
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	425, 432
Csp6I	GTAC	2 cut(s)	41, 177
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	9 cut(s)	20, 98, 228, 235, 298, 342, 396, 420, 434
CviKI_1	RGCY	9 cut(s)	20, 98, 228, 235, 298, 342, 396, 420, 434
CviQI	GTAC	2 cut(s)	41, 177
DdeI	CTNAG	2 cut(s)	77, 421
Eco130I	CCWWGG	2 cut(s)	308, 428
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	425
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	3 cut(s)	36, 51, 199
EcoT14I	CCWWGG	2 cut(s)	308, 428
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	2 cut(s)	308, 428
FaeI	CATG	1 cut(s)	209
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	330
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	329, 436
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	342, 434
Hin1II	CATG	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	263
HphI	GGTGA	4 cut(s)	67, 143, 251, 325
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	2 cut(s)	145, 267
Hpy8I	GTNNAC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	246, 403
HpyF3I	CTNAG	2 cut(s)	77, 421
Hsp92II	CATG	1 cut(s)	209
KpnI	GGTACC	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	329, 436
MaeIII	GTNAC	2 cut(s)	282, 331
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	2 cut(s)	135, 290
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	54, 407
MroXI	GAANNNNTTC	1 cut(s)	195
MspR9I	CCNGG	3 cut(s)	38, 53, 201
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	3 cut(s)	38, 53, 201
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	331
PctI	GAATGC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	3 cut(s)	36, 51, 199
PspGI	CCWGG	3 cut(s)	36, 51, 199
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	425, 432
PspPPI	RGGWCCY	1 cut(s)	425
RsaI	GTAC	2 cut(s)	42, 178
RsaNI	GTAC	2 cut(s)	41, 177
SatI	GCNGC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	425, 432
ScrFI	CCNGG	3 cut(s)	38, 53, 201
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	9 cut(s)	12, 42, 46, 57, 237, 284, 300, 314, 427
SinI	GGWCC	1 cut(s)	425
SpeI	ACTAGT	1 cut(s)	328
Sse9I	AATT	2 cut(s)	135, 290
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	2 cut(s)	329, 436
StyD4I	CCNGG	3 cut(s)	36, 51, 199
StyI	CCWWGG	2 cut(s)	308, 428
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	135, 290
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	74, 123
VpaK11BI	GGWCC	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	2 cut(s)	329, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.