Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

49328703 .. 49330231

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTTTAAATCAACGCTTGCTTCGTTTACTCACAAGCCGTCAAAGGCTTACGGGGTTGGTGTTGTTGCAATCCCGGTACACTATTCAAATTGTGTAGCGGGAGTTTTGCAGGGCGTGACAGAACCGTTTGTAGAATTGTTGAAGAGCTTGGATACTTTTCCCAATGCATTCACCTATCCTGATAGGACTTGCTACCCAGTTGGCTCCACAAATTCGAAGGATTTCTATAATTTGATTGGTGTGTACCTCGATGCTGTGTTCTTCCCAAAATATGTGAAGGATTTCCAAACTTTCCAACACGAGGGCTGCCATTATGAGCTCCACAATCTTTCTGAAGACATCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031967 GO:0031974 GO:0031975 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

115

Amino Acids

12.94

Weight (kDa)

5.88

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	346
AciI	CCGC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	2 cut(s)	78, 245
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	87, 142
AluBI	AGCT	2 cut(s)	147, 319
AluI	AGCT	2 cut(s)	147, 319
Alw21I	GWGCWC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	2 cut(s)	221, 281
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	22
BciVI	GTATCC	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	74
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	77, 244
CviJI	RGCY	6 cut(s)	37, 47, 147, 204, 306, 319
CviKI_1	RGCY	6 cut(s)	37, 47, 147, 204, 306, 319
CviQI	GTAC	2 cut(s)	77, 244
DraI	TTTAAA	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	321
FaiI	YATR	4 cut(s)	228, 273, 315, 346
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	307
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	307
HapII	CCGG	1 cut(s)	74
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	3 cut(s)	27, 79, 244
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	3 cut(s)	27, 79, 244
HpyAV	CCTTC	2 cut(s)	211, 271
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	68, 109, 167
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	209, 324
LpnPI	CCDG	4 cut(s)	87, 95, 192, 210
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	115
MboII	GAAGA	3 cut(s)	154, 253, 347
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	4 cut(s)	88, 134, 211, 229
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	2 cut(s)	257, 295
Mph1103I	ATGCAT	1 cut(s)	169
MroXI	GAANNNNTTC	2 cut(s)	221, 281
MseI	TTAA	1 cut(s)	6
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	167
PdmI	GAANNNNTTC	2 cut(s)	221, 281
PkrI	GCNGC	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	205
RsaI	GTAC	2 cut(s)	78, 245
RsaNI	GTAC	2 cut(s)	77, 244
SacI	GAGCTC	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	4 cut(s)	149, 176, 249, 321
SfaNI	GCATC	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	215
Sse9I	AATT	4 cut(s)	88, 134, 211, 229
SsiI	CCGC	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	215, 249
TasI	AATT	4 cut(s)	88, 134, 211, 229
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	211
XmnI	GAANNNNTTC	2 cut(s)	221, 281
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.