Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003641.1

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

55585 .. 56750

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003641.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgtttcgagaagcctccatcaccgccaagcttctctcttcaccgacatcagaactacccatggacataaataccgatcaaggcttgctcccaaattgtgattcgcttgataatctaaaggaaaaaaacaaatcagactttgttttggaagaagtgtgtgccgagattgtgatcgagtttaggacacaggctttgggaccaaaagaggaaatacctttgaaagaaccgtttgtagaattgttgaagagcttggatacttttcccaatgcattcacctatcctgataggacttgctacccagttggctccacaaattcgaaggatttctataatctgattgatgtgtacctcgatgctgtgttcttcccaaaatatgtgaaggatttccaaactttccaacacgagggctaccattatgagctccacaatctttctgaagacatcttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031967 GO:0031974 GO:0031975 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

149

Amino Acids

17.16

Weight (kDa)

4.48

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	448
AciI	CCGC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	313
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	220, 244
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	3 cut(s)	31, 249, 421
AluI	AGCT	3 cut(s)	31, 249, 421
Alw21I	GWGCWC	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	313
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
Asp700I	GAANNNNTTC	2 cut(s)	323, 383
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	13, 33, 265
AsuII	TTCGAA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	423
BccI	CCATC	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	198, 307
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	60
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseNI	ACTGG	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	76, 171
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	198, 307
BspQI	GCTCTTC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	76, 171
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	2 cut(s)	43, 239
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	79, 174
BstMBI	GATC	2 cut(s)	76, 171
BstV2I	GAAGAC	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	8 cut(s)	14, 31, 84, 191, 249, 306, 408, 421
CviKI_1	RGCY	8 cut(s)	14, 31, 84, 191, 249, 306, 408, 421
CviQI	GTAC	1 cut(s)	346
DpnI	GATC	2 cut(s)	78, 173
DpnII	GATC	2 cut(s)	76, 171
Eam1104I	CTCTTC	2 cut(s)	43, 239
EarI	CTCTTC	2 cut(s)	43, 239
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	6 cut(s)	62, 68, 330, 375, 417, 448
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	423
Hin1II	CATG	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	3 cut(s)	13, 33, 265
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	4 cut(s)	52, 136, 336, 436
Hpy188III	TCNNGA	2 cut(s)	8, 281
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	313, 373
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	76, 171
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	3 cut(s)	93, 311, 426
LpnPI	CCDG	3 cut(s)	173, 294, 312
LweI	GCATC	1 cut(s)	343
MalI	GATC	2 cut(s)	78, 173
MboI	GATC	2 cut(s)	76, 171
MboII	GAAGA	5 cut(s)	30, 161, 256, 355, 449
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	3 cut(s)	94, 236, 313
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	4 cut(s)	25, 199, 359, 397
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	2 cut(s)	323, 383
Mva1269I	GAATGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	76, 171
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	198, 307
NmeAIII	GCCGAG	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	239
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	2 cut(s)	323, 383
PfeI	GAWTC	1 cut(s)	101
PsiI	TTATAA	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	198, 307
PspPI	GGNCC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	76, 171
Sau96I	GGNCC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	6 cut(s)	33, 217, 251, 278, 351, 423
SfaNI	GCATC	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	317
SinI	GGWCC	1 cut(s)	197
Sse9I	AATT	3 cut(s)	94, 236, 313
SsiI	CCGC	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	7, 174, 317, 351
TasI	AATT	3 cut(s)	94, 236, 313
TfiI	GAWTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	1 cut(s)	313
XmnI	GAANNNNTTC	2 cut(s)	323, 383
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.