Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

38194692 .. 38196223

Gene Structure 1532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCCGCCGGCGACGGAGGAACCTAACACGACGGCGTCCTCAACGACGACGACGATGATCGACGAGATTTATGAGTTCTCGGCCCCGCGCTTCTTCGATTTCATCAAGGACGAGACCGACGATGACAAGATCAAGGTGATGAAAACTTGTTCCAAACTGGGTAAAATCTATTTGACTGCTATGGTGTATGAACTCTATAAAACAGGAATGGGTGAAACTACTTTTGAAAAGTTGGCAATGACAGTTTATAATCTGTGTACAAGCAATGGAGAAGCATTTCCTGGACATGATACGCAGTTAAAAGTCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

4.64

Isoelectric Point (pI)

16.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccII	CGCG	1 cut(s)	88
AciI	CCGC	2 cut(s)	5, 86
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	148, 224
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	21, 84
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	243, 271
BseBI	CCWGG	1 cut(s)	282
BseMI	GCAATG	2 cut(s)	243, 271
BseNI	ACTGG	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	57, 129
BspACI	CCGC	2 cut(s)	5, 86
BspANI	GGCC	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	21, 84
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	243, 271
BsrFI	RCCGGY	1 cut(s)	7
BsrGI	TGTACA	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	7
BssMI	GATC	2 cut(s)	57, 129
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	60, 132
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	57, 129
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	1 cut(s)	83
CviKI_1	RGCY	1 cut(s)	83
CviQI	GTAC	1 cut(s)	258
DpnI	GATC	2 cut(s)	59, 131
DpnII	GATC	2 cut(s)	57, 129
Eco31I	GGTCTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	1 cut(s)	290
FaiI	YATR	6 cut(s)	72, 182, 189, 198, 249, 288
FatI	CATG	1 cut(s)	286
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	148, 224
Hpy166II	GTNNAC	1 cut(s)	258
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	7 cut(s)	16, 34, 49, 52, 55, 65, 122
HpyCH4III	ACNGT	1 cut(s)	244
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	57, 129
LpnPI	CCDG	5 cut(s)	21, 143, 189, 267, 294
MalI	GATC	2 cut(s)	59, 131
MboI	GATC	2 cut(s)	57, 129
MboII	GAAGA	1 cut(s)	85
MnlI	CCTC	2 cut(s)	10, 49
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	299
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	88
NaeI	GCCGGC	1 cut(s)	9
NdeII	GATC	2 cut(s)	57, 129
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	21, 84
NmeAIII	GCCGAG	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 117
PdiI	GCCGGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	6
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	21, 84
PspPI	GGNCC	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	57, 129
Sau96I	GGNCC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	2 cut(s)	25, 138
SgrAI	CRCCGGYG	1 cut(s)	7
SsiI	CCGC	2 cut(s)	5, 86
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	60, 96
TaqII	GACCGA	1 cut(s)	131
TatI	WGTACW	1 cut(s)	257
TauI	GCSGC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TspDTI	ATGAA	3 cut(s)	91, 155, 204
TspGWI	ACGGA	1 cut(s)	29
Tth111I	GACNNNGTC	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.