Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

49249738 .. 49257053

Gene Structure 7316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG244300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCCGCCGGCGACAGAGGAACCTTACATGACGGCGTCCTCGATGACGATGGTGATGATCGACAAGATTTATGAGTGCTCGGCCCCGTGCTTCTTCGATTTCATCAAGGACGAGACTGACGACGACAAGATCAATGCCGAACTCAGGTCCCCGTCTCGTGTTAGCGCTACAAACAACGAAGAGGCTGCTGCCAAGGTAGCTGCAGCTAATGCCGACAGTGGAGCTCCAACAATGTATCATCCTTCACATATTAAAACTGGTTTGATCTCACTTTCAATATCAGGGCATAGTTTTCAGTCCAAAGTATTCTATTTAACTGTTAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

109

Amino Acids

11.92

Weight (kDa)

5.0

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	35
AfeI	AGCGCT	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	276
AluBI	AGCT	3 cut(s)	200, 206, 224
AluI	AGCT	3 cut(s)	200, 206, 224
Alw21I	GWGCWC	2 cut(s)	80, 226
Alw26I	GTCTC	2 cut(s)	107, 159
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	4 cut(s)	185, 188, 200, 203
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	82, 147
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	80, 226
BbvI	GCAGC	4 cut(s)	172, 175, 187, 215
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	2 cut(s)	107, 159
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	5 cut(s)	5, 186, 189, 201, 204
BlsI	GCNGC	5 cut(s)	6, 187, 190, 202, 205
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	82, 147
BmiI	GGNNCC	3 cut(s)	21, 84, 149
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	4 cut(s)	172, 175, 187, 215
BshFI	GGCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	80, 226
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	107, 159
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	80, 226
Bsp143I	GATC	3 cut(s)	57, 129, 264
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	21, 84, 149
BspMAI	CTGCAG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	57, 129, 264
BssNI	GRCGYC	1 cut(s)	35
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	218, 319
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	60, 132, 267
BstMAI	GTCTC	2 cut(s)	107, 159
BstMBI	GATC	3 cut(s)	57, 129, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 209
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	4 cut(s)	172, 175, 187, 215
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	82, 147
CseI	GACGC	1 cut(s)	24
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	5 cut(s)	83, 185, 200, 206, 224
CviKI_1	RGCY	5 cut(s)	83, 185, 200, 206, 224
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	3 cut(s)	59, 131, 266
DpnII	GATC	3 cut(s)	57, 129, 264
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	147
Eco47III	AGCGCT	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	1 cut(s)	31
FaiI	YATR	4 cut(s)	29, 72, 249, 288
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	5 cut(s)	5, 186, 189, 201, 204
FokI	GGATG	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	5 cut(s)	5, 186, 189, 201, 204
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	5 cut(s)	5, 186, 189, 201, 204
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	218, 319
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 209
HpyF3I	CTNAG	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	57, 129, 264
LmnI	GCTCC	2 cut(s)	221, 229
LpnPI	CCDG	4 cut(s)	21, 130, 243, 267
Lsp1109I	GCAGC	4 cut(s)	172, 175, 187, 215
MalI	GATC	3 cut(s)	59, 131, 266
MboI	GATC	3 cut(s)	57, 129, 264
MboII	GAAGA	2 cut(s)	85, 191
MhlI	GDGCHC	2 cut(s)	80, 226
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	3 cut(s)	10, 49, 175
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	3 cut(s)	252, 314, 321
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	197, 209
NaeI	GCCGGC	1 cut(s)	9
NdeII	GATC	3 cut(s)	57, 129, 264
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	3 cut(s)	21, 84, 149
NmeAIII	GCCGAG	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 117
PdiI	GCCGGC	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	5 cut(s)	6, 187, 190, 202, 205
PpuMI	RGGWCCY	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	21, 84, 149
PspPI	GGNCC	2 cut(s)	82, 147
PspPPI	RGGWCCY	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	252, 314, 321
SatI	GCNGC	5 cut(s)	5, 186, 189, 201, 204
Sau3AI	GATC	3 cut(s)	57, 129, 264
Sau96I	GGNCC	2 cut(s)	82, 147
SduI	GDGCHC	2 cut(s)	80, 226
SetI	ASST	6 cut(s)	25, 149, 198, 202, 208, 226
SfcI	CTRYAG	1 cut(s)	201
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	147
SsiI	CCGC	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	218, 319
TaqI	TCGA	3 cut(s)	41, 60, 96
TauI	GCSGC	1 cut(s)	7
Tru1I	TTAA	3 cut(s)	252, 314, 321
Tru9I	TTAA	3 cut(s)	252, 314, 321
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	4 cut(s)	185, 188, 200, 203
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.