Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

56472842 .. 56475451

Gene Structure 2610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCGCCGGCGACGGAGGAACCTTACACGACGGCGTCCTCGATGACGATGATGATGATCGACAAGATTTATGAGTTATCGGCCCCGTGCTTCTTCGATTTCATCAAGGACGAGACCGACGACGACAAGATCAATGCCGAGCTCAGGTCCCCGTCTCGTGTTAGTGCTACAAACAACGAAGAGGCTGCTGCCAAGGTAGCTGCAGCTAATGTCGACAGTGGAGCTCCAACAATGATGACTAATAGGTATCCTGTCAACATAAACAAACAAAAAGACCTGATCAATCTTTTGGGAGCTACCTATGCTGTTGTTCTTTTCCTTGCAGCTAGCAATGCCTCTACCATGCAATCTGTTGTGGCGGTTAAGCAGCATGAATGTACTCAGGGTTTCCTTATGCATTTGCTCAAGTGGCTGTTGAATCCTAGGAACAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

145

Amino Acids

15.96

Weight (kDa)

5.32

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	2 cut(s)	5, 359
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	418
AluBI	AGCT	6 cut(s)	142, 200, 206, 224, 296, 326
AluI	AGCT	6 cut(s)	142, 200, 206, 224, 296, 326
Alw21I	GWGCWC	2 cut(s)	144, 226
Alw26I	GTCTC	2 cut(s)	107, 159
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	6 cut(s)	185, 188, 200, 203, 323, 367
AspA2I	CCTAGG	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	82, 147
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	147
AvrII	CCTAGG	1 cut(s)	422
BanII	GRGCYC	2 cut(s)	144, 226
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	144, 226
BbvI	GCAGC	6 cut(s)	172, 175, 187, 215, 335, 379
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciVI	GTATCC	1 cut(s)	258
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	107, 159
BfaI	CTAG	2 cut(s)	327, 423
BfmI	CTRYAG	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	258
BisI	GCNGC	7 cut(s)	5, 186, 189, 201, 204, 324, 368
BlnI	CCTAGG	1 cut(s)	422
BlsI	GCNGC	7 cut(s)	6, 187, 190, 202, 205, 325, 369
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	82, 147
BmiI	GGNNCC	3 cut(s)	21, 84, 149
BmtI	GCTAGC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	192, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	192, 422
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	157, 395
BseXI	GCAGC	6 cut(s)	172, 175, 187, 215, 335, 379
BshFI	GGCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	144, 226
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	107, 159
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	144, 226
Bsp143I	GATC	3 cut(s)	57, 129, 279
BspACI	CCGC	2 cut(s)	5, 359
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	156, 394
BspLI	GGNNCC	3 cut(s)	21, 84, 149
BspMAI	CTGCAG	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	192, 422
BssMI	GATC	3 cut(s)	57, 129, 279
BssNI	GRCGYC	1 cut(s)	35
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	192, 422
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	9, 328
BstDEI	CTNAG	2 cut(s)	143, 381
BstKTI	GATC	3 cut(s)	60, 132, 282
BstMAI	GTCTC	2 cut(s)	107, 159
BstMBI	GATC	3 cut(s)	57, 129, 279
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 302, 332, 409
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	6 cut(s)	172, 175, 187, 215, 335, 379
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	9, 328
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	82, 147
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	2 cut(s)	343, 371
CviJI	RGCY	9 cut(s)	83, 142, 185, 200, 206, 224, 296, 326, 412
CviKI_1	RGCY	9 cut(s)	83, 142, 185, 200, 206, 224, 296, 326, 412
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	143, 381
DpnI	GATC	3 cut(s)	59, 131, 281
DpnII	GATC	3 cut(s)	57, 129, 279
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	2 cut(s)	142, 224
Eco130I	CCWWGG	2 cut(s)	192, 422
Eco24I	GRGCYC	2 cut(s)	144, 226
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	147
Eco53kI	GAGCTC	2 cut(s)	142, 224
EcoICRI	GAGCTC	2 cut(s)	142, 224
EcoO109I	RGGNCCY	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	192, 422
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	2 cut(s)	144, 226
ErhI	CCWWGG	2 cut(s)	192, 422
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	2 cut(s)	346, 374
FaiI	YATR	7 cut(s)	72, 260, 303, 344, 372, 395, 436
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	2 cut(s)	342, 370
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	7 cut(s)	5, 186, 189, 201, 204, 324, 368
FriOI	GRGCYC	2 cut(s)	144, 226
Fsp4HI	GCNGC	7 cut(s)	5, 186, 189, 201, 204, 324, 368
FspBI	CTAG	2 cut(s)	327, 423
GluI	GCNGC	7 cut(s)	5, 186, 189, 201, 204, 324, 368
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	346, 374
HincII	GTYRAC	2 cut(s)	214, 256
HindII	GTYRAC	2 cut(s)	214, 256
HinfI	GANTC	1 cut(s)	418
HpaII	CCGG	1 cut(s)	8
Hpy166II	GTNNAC	2 cut(s)	214, 256
Hpy8I	GTNNAC	2 cut(s)	214, 256
Hpy99I	CGWCG	4 cut(s)	16, 34, 122, 125
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	203, 323, 346, 397
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 302, 332, 409
HpyF3I	CTNAG	2 cut(s)	143, 381
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	346, 374
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	57, 129, 279
LmnI	GCTCC	3 cut(s)	221, 229, 293
LpnPI	CCDG	5 cut(s)	21, 130, 264, 290, 368
Lsp1109I	GCAGC	6 cut(s)	172, 175, 187, 215, 335, 379
MaeI	CTAG	2 cut(s)	327, 423
MalI	GATC	3 cut(s)	59, 131, 281
MboI	GATC	3 cut(s)	57, 129, 279
MboII	GAAGA	2 cut(s)	85, 191
MhlI	GDGCHC	2 cut(s)	144, 226
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	10, 49, 175, 346
Mph1103I	ATGCAT	1 cut(s)	399
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	1 cut(s)	363
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	4 cut(s)	197, 302, 332, 409
NaeI	GCCGGC	1 cut(s)	9
NdeII	GATC	3 cut(s)	57, 129, 279
NgoMIV	GCCGGC	1 cut(s)	7
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	346, 374
NlaIV	GGNNCC	3 cut(s)	21, 84, 149
NmeAIII	GCCGAG	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 117
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	418
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	7 cut(s)	6, 187, 190, 202, 205, 325, 369
PpuMI	RGGWCCY	1 cut(s)	147
Psp124BI	GAGCTC	2 cut(s)	144, 226
Psp5II	RGGWCCY	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	21, 84, 149
PspPI	GGNCC	2 cut(s)	82, 147
PspPPI	RGGWCCY	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SacI	GAGCTC	2 cut(s)	144, 226
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	7 cut(s)	5, 186, 189, 201, 204, 324, 368
Sau3AI	GATC	3 cut(s)	57, 129, 279
Sau96I	GGNCC	2 cut(s)	82, 147
SduI	GDGCHC	2 cut(s)	144, 226
SfcI	CTRYAG	1 cut(s)	201
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SsiI	CCGC	2 cut(s)	5, 359
SspMI	CTAG	2 cut(s)	327, 423
SstI	GAGCTC	2 cut(s)	144, 226
StyI	CCWWGG	2 cut(s)	192, 422
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	4 cut(s)	41, 60, 96, 213
TaqII	GACCGA	1 cut(s)	131
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	6 cut(s)	185, 188, 200, 203, 323, 367
TspDTI	ATGAA	2 cut(s)	91, 387
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	147
XmaJI	CCTAGG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	327, 423
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.