Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Reverse (-)

46300375 .. 46305854

Gene Structure 5480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGTGTCAATCTTATTAATAGTCGTAACGTGATGAAAACTTGTTCCAAACTGGGTAAAATCTATTTGACTGCTATGGTGTATGAACTCTATAAAACGGGGATGGGTGAAACTACTTTTGAAAAGATACTTGGTTTGTTTGATTGGTCTGGAAGCAACCCTATGCCCCGAGTTTTGGATTCTTACTTCATTTCTTCCTATGCATCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

70

Amino Acids

7.93

Weight (kDa)

9.21

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
Ama87I	CYCGRG	1 cut(s)	168
AseI	ATTAAT	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	168
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	208
BseGI	GGATG	2 cut(s)	108, 203
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	208
BstF5I	GGATG	2 cut(s)	108, 203
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	108, 203
Eco88I	CYCGRG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	205
FaiI	YATR	5 cut(s)	77, 84, 93, 164, 201
FokI	GGATG	2 cut(s)	115, 190
HinfI	GANTC	1 cut(s)	179
HphI	GGTGA	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	30
LpnPI	CCDG	3 cut(s)	38, 135, 193
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	26
MboII	GAAGA	1 cut(s)	186
Mph1103I	ATGCAT	1 cut(s)	205
MseI	TTAA	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	179
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	2 cut(s)	33, 212
SgeI	CNNG	8 cut(s)	43, 54, 65, 111, 143, 162, 180, 182
StyD4I	CCNGG	1 cut(s)	206
TaiI	ACGT	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TspDTI	ATGAA	3 cut(s)	50, 99, 178
VspI	ATTAAT	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.