Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Reverse (-)

74400333 .. 74400697

Gene Structure 365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG517000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCTGTCGGCGACGGAAGAACCCAACACGATGACGTCCTCGACAATGATGATGATTGACGAGATTTATGAGTTCTCAGCCCCGCGCTTCTTCGATTTCATCAAGGACGAGACTGACGACGACAAGATCAAGGCCGAGCTTTGGTTCGATTCCCTTCCCGCGACGGACGCGACGGACGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

60

Amino Acids

6.86

Weight (kDa)

4.05

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccII	CGCG	3 cut(s)	85, 161, 170
AciI	CCGC	2 cut(s)	83, 159
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	90
Bsh1236I	CGCG	3 cut(s)	85, 161, 170
BshFI	GGCC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	83, 159
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	89
BspFNI	CGCG	3 cut(s)	85, 161, 170
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	76
BstFNI	CGCG	3 cut(s)	85, 161, 170
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstUI	CGCG	3 cut(s)	85, 161, 170
BsuRI	GGCC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	87
CseI	GACGC	1 cut(s)	176
CviJI	RGCY	3 cut(s)	80, 134, 139
CviKI_1	RGCY	3 cut(s)	80, 134, 139
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
FaiI	YATR	1 cut(s)	69
FauI	CCCGC	2 cut(s)	90, 166
GlaI	GCGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	134
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	149
Hpy99I	CGWCG	4 cut(s)	16, 122, 166, 175
HpyAV	CCTTC	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	35
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	126
MaeII	ACGT	1 cut(s)	35
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	29, 82
MnlI	CCTC	1 cut(s)	49
MvnI	CGCG	3 cut(s)	85, 161, 170
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	126
SetI	ASST	2 cut(s)	38, 141
SsiI	CCGC	2 cut(s)	83, 159
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	3 cut(s)	41, 93, 147
TfiI	GAWTC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	2 cut(s)	29, 179
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.