Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

53418963 .. 53427958

Gene Structure 8996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG405200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGAGGAGTGATCCATGTCCATGCAGACGTGATGAAAACTTGTTCCAAACTGGGTAAAATCTATTTGACTGCTATGGTGTATGAACTCTATAAAACAGGAATGGGTGAAACTACTTTTGAAAAGAATCAAAGCCATACAACAGGTGGACTGCCGACTTTTATTGATGTTGGGAATAGCTTTGGTGCTCTAGCAATTGTTGAAGATAATTTGTTACATCAGTTCCATAGCCTTGCCTTTCTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

82

Amino Acids

8.93

Weight (kDa)

6.15

Isoelectric Point (pI)

11.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	7
AgsI	TTSAA	2 cut(s)	122, 203
AjiI	CACGTC	1 cut(s)	31
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BtrI	CACGTC	1 cut(s)	31
CviAII	CATG	2 cut(s)	17, 23
CviJI	RGCY	3 cut(s)	135, 180, 231
CviKI_1	RGCY	3 cut(s)	135, 180, 231
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
FaeI	CATG	2 cut(s)	20, 26
FaiI	YATR	8 cut(s)	18, 24, 77, 84, 93, 138, 228, 247
FatI	CATG	2 cut(s)	16, 22
FspBI	CTAG	1 cut(s)	191
Hin1II	CATG	2 cut(s)	20, 26
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	20, 26
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	3 cut(s)	38, 84, 129
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	215
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	195, 208
MslI	CAYNNNNRTG	1 cut(s)	21
MunI	CAATTG	1 cut(s)	195
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	20, 26
PfeI	GAWTC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	3 cut(s)	33, 148, 182
SgeI	CNNG	9 cut(s)	29, 35, 43, 54, 65, 111, 156, 203, 245
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	2 cut(s)	195, 208
SspMI	CTAG	1 cut(s)	191
TaiI	ACGT	1 cut(s)	33
TasI	AATT	2 cut(s)	195, 208
TfiI	GAWTC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	50, 99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.