Rroxscaffold_4G00320760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003457
Physical Location & Seq
Reverse (-)
49719227 .. 49721816
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320760.1

Sequence Viewer

Length: 372 bp
ATGCCGCCGGTGCCGGTGACGGAGGAACCTAACACGACGGCGTCCTCGACGATGATGAAGATCAACGAGATTTATGAGTTCTCGGGCCACACTTCTTCGATTTCATCAAGGTCATCAAGGACGAGACCGACGACGACAAGATCAAGGCCAAGCTCTGGTTCGACTCCGCCACCACCTACGCCCCTTCCTATACGATTCCCTATCTCTCTTCAATTCGTCAATTCCTTGTTCCGCTTTTTCTCAGATTTGTTTTTGTACTGGATTCAATTTTCTTTCCAAATTAGGGATTTAGATTTTCTTCTTTTTCTCAGCTCCAAATTGTCAGTGACTTCTACTCTTCTCCAATCTTTATCCTTGATTCAAGAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.91

Weight (kDa)

9.51

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 155
AciI CCGC 3 cut(s) 5, 167, 232
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 155, 283
AgsI TTSAA 3 cut(s) 212, 266, 362
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 2 cut(s) 153, 312
AluI AGCT 2 cut(s) 153, 312
Alw26I GTCTC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 2 cut(s) 85, 146
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 82
BanI GGYRCC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 118
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 12, 27
BsaBI GATNNNNATC 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 283
Bse118I RCCGGY 2 cut(s) 7, 13
Bse1I ACTGG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 59
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 155, 283
BseMII CTCAG 2 cut(s) 255, 322
BseNI ACTGG 1 cut(s) 263
BshFI GGCC 2 cut(s) 87, 148
BshNI GGYRCC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 2 cut(s) 8, 14
BslI CCNNNNNNNGG 2 cut(s) 155, 283
BsmAI GTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 87, 148
Bso31I GGTCTC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 82
Bsp143I GATC 2 cut(s) 60, 140
BspACI CCGC 3 cut(s) 5, 167, 232
BspANI GGCC 2 cut(s) 87, 148
BspCNI CTCAG 2 cut(s) 254, 321
BspLI GGNNCC 2 cut(s) 12, 27
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 118
BsrFI RCCGGY 2 cut(s) 7, 13
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 2 cut(s) 7, 13
BssMI GATC 2 cut(s) 60, 140
BssNI GRCGYC 1 cut(s) 41
Bst6I CTCTTC 2 cut(s) 213, 342
BstACI GRCGYC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 241, 308
BstKTI GATC 2 cut(s) 63, 143
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 2 cut(s) 60, 140
BstMWI GCNNNNNNNGC 1 cut(s) 10
BsuRI GGCC 2 cut(s) 87, 148
BtsIMutI CAGTG 1 cut(s) 330
Cfr10I RCCGGY 2 cut(s) 7, 13
Cfr13I GGNCC 1 cut(s) 85
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 256
CviAII CATG 1 cut(s) 369
CviJI RGCY 4 cut(s) 87, 148, 153, 312
CviKI_1 RGCY 4 cut(s) 87, 148, 153, 312
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 241, 308
DpnI GATC 2 cut(s) 62, 142
DpnII GATC 2 cut(s) 60, 140
Eam1104I CTCTTC 2 cut(s) 213, 342
EarI CTCTTC 2 cut(s) 213, 342
EciI GGCGGA 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 82
FaeI CATG 1 cut(s) 372
FaiI YATR 3 cut(s) 75, 191, 370
FatI CATG 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 2 cut(s) 87, 148
HapII CCGG 2 cut(s) 8, 14
HgaI GACGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 1 cut(s) 372
HinfI GANTC 4 cut(s) 163, 195, 262, 358
HpaII CCGG 2 cut(s) 8, 14
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 362
Hpy99I CGWCG 4 cut(s) 40, 52, 133, 136
HpyAV CCTTC 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 241, 308
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 1 cut(s) 372
Kzo9I GATC 2 cut(s) 60, 140
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 4 cut(s) 21, 27, 141, 244
MaeIII GTNAC 2 cut(s) 16, 325
MalI GATC 2 cut(s) 62, 142
MboI GATC 2 cut(s) 60, 140
MboII GAAGA 5 cut(s) 70, 87, 200, 290, 329
MluCI AATT 5 cut(s) 212, 220, 266, 279, 317
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 2 cut(s) 16, 55
MspI CCGG 2 cut(s) 8, 14
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 60, 140
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 2 cut(s) 12, 27
NmuCI GTSAC 2 cut(s) 16, 325
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 128
PfeI GAWTC 3 cut(s) 195, 262, 358
PflFI GACNNNGTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 12, 27
PspPI GGNCC 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 40
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 60, 140
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 157
SetI ASST 5 cut(s) 31, 113, 155, 178, 314
SgrAI CRCCGGYG 1 cut(s) 7
Sse9I AATT 5 cut(s) 212, 220, 266, 279, 317
SsiI CCGC 3 cut(s) 5, 167, 232
TaqI TCGA 3 cut(s) 47, 98, 161
TaqII GACCGA 1 cut(s) 142
TasI AATT 5 cut(s) 212, 220, 266, 279, 317
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 195, 262, 358
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 2 cut(s) 16, 325
Tsp45I GTSAC 2 cut(s) 16, 325
TspDTI ATGAA 2 cut(s) 71, 93
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 330
Tth111I GACNNNGTC 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.