Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Reverse (-)

35725959 .. 35726804

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24606

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCCATCGGCGACGGAAGAACCCAACACGATGACGTCCTCGACGATGATGATCGACGAGATTTATGAGTTCTCAGCCCCGTGCTTCTTCGATTTCATCAAGGACGAGACTGACGACGACAAGATCAAGGCCGAGCTTTGGTTCGATTCCCTTCCCGTACGATTCCCTATCCCTCTTCTCTTTTCTTTATTCTTCAGTTCGTCAATTCCTTGTTACGCTTTTTCTCAAATATGTTTTTGTGTTGGATTCCATTTTCTTTCCAAATTAGGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

91

Amino Acids

10.45

Weight (kDa)

4.19

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	138, 267
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	129
BccI	CCATC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 267
Bse8I	GATNNNNATC	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	138, 267
BseMII	CTCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	131
BsiWI	CGTACG	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	138, 267
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	51, 123
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	86
BssMI	GATC	2 cut(s)	51, 123
BssNI	GRCGYC	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	54, 126
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	51, 123
BsuRI	GGCC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	158
CviJI	RGCY	3 cut(s)	77, 131, 136
CviKI_1	RGCY	3 cut(s)	77, 131, 136
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	2 cut(s)	53, 125
DpnII	GATC	2 cut(s)	51, 123
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	178
FaiI	YATR	2 cut(s)	66, 232
HaeIII	GGCC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	35
HinfI	GANTC	3 cut(s)	146, 162, 246
Hpy99I	CGWCG	4 cut(s)	16, 46, 59, 119
HpyAV	CCTTC	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	51, 123
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	53, 125
MboI	GATC	2 cut(s)	51, 123
MboII	GAAGA	4 cut(s)	29, 79, 167, 184
MluCI	AATT	2 cut(s)	204, 263
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	2 cut(s)	49, 183
NdeII	GATC	2 cut(s)	51, 123
NmeAIII	GCCGAG	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 111
PfeI	GAWTC	3 cut(s)	146, 162, 246
Pfl23II	CGTACG	1 cut(s)	157
PspLI	CGTACG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	51, 123
SetI	ASST	2 cut(s)	38, 138
Sse9I	AATT	2 cut(s)	204, 263
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	41, 54, 90, 144
TasI	AATT	2 cut(s)	204, 263
TfiI	GAWTC	3 cut(s)	146, 162, 246
TspDTI	ATGAA	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.