Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Reverse (-)

17484666 .. 17489085

Gene Structure 4420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG099800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGTTCTCGGCCCCGTGCTTCTTCGATTTCATCAAGGACGAGACCGATGATGACAAGATCAAGGCCGAGCTCTGGTTCGACTCCGCCACAGCCTACGCCCCTTCCCGTGATGAAAACTTGTTCCAAACTGGGTAAAATCTATTTGACTGCTATGGTGTATGAACTCTATAAAACAGGAATGGGTGAAACTACTTTTGAAAAGTTGGCAATGACAGTTTATAATCTGTGTACAAGCAATGGAGAAGCATTTCCTGGACATGATACGCTGTTAAAAGTCGGAAATGATTCGACTGGAATCCCACACATTTTGGAGCACAGTGTGTTGTGTGGTTCTAGGAAATACCCTTTGAAAGAGCCGTTTGTGGAATTGTTGAAAGGGAGCTTGAATACTTTTCTCAATGCATTCACCTATCCTGATAGGACTTGCTACCCTGTTGCCTCTACAAATTCAAAGGATTTCTATAATCTGGTCGATGTGTACCTGGATGCTGTGTTCTTTCCAAAATGCGTGGAGGATTTCCAGACTTTCCAGCAGGATGGCTGGCACTATGAGCTCAACGATCCTTCTGAAGACATATCTTATAAAGGTTGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031967 GO:0031974 GO:0031975 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

199

Amino Acids

22.4

Weight (kDa)

6.89

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	96 - 169	5.2e-07	Insulinase (Peptidase family M16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	222, 585
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	591
AdeI	CACNNNGTG	1 cut(s)	322
AfaI	GTAC	2 cut(s)	232, 482
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	200, 352, 376, 388, 453
AjnI	CCWGG	2 cut(s)	253, 483
AloI	GAACNNNNNNTCC	2 cut(s)	479, 511
AluBI	AGCT	3 cut(s)	72, 384, 556
AluI	AGCT	3 cut(s)	72, 384, 556
Alw21I	GWGCWC	3 cut(s)	74, 318, 558
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	2 cut(s)	11, 65
ApoI	RAATTY	1 cut(s)	448
Asp700I	GAANNNNTTC	2 cut(s)	249, 286
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	2 cut(s)	197, 400
BanII	GRGCYC	2 cut(s)	74, 558
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	3 cut(s)	74, 318, 558
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	2 cut(s)	255, 485
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	336
Bme1390I	CCNGG	2 cut(s)	255, 485
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	255, 485
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	478
BmuI	ACTGGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	135, 298
Bse3DI	GCAATG	2 cut(s)	216, 244
BseBI	CCWGG	2 cut(s)	255, 485
BseGI	GGATG	2 cut(s)	493, 544
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	2 cut(s)	216, 244
BseNI	ACTGG	2 cut(s)	135, 298
BshFI	GGCC	2 cut(s)	13, 67
BsiHKAI	GWGCWC	3 cut(s)	74, 318, 558
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	13, 67
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	74, 318, 558
Bsp1407I	TGTACA	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	59, 562
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	13, 67
BspLI	GGNNCC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	216, 244
BsrGI	TGTACA	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	135, 298
BssMI	GATC	2 cut(s)	59, 562
Bst2UI	CCWGG	2 cut(s)	255, 485
Bst4CI	ACNGT	2 cut(s)	217, 320
BstAUI	TGTACA	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	493, 544
BstKTI	GATC	2 cut(s)	62, 565
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	59, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	2 cut(s)	255, 485
BstSCI	CCNGG	2 cut(s)	253, 483
BstV2I	GAAGAC	1 cut(s)	579
BstXI	CCANNNNNNTGG	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	13, 67
BtsCI	GGATG	2 cut(s)	493, 544
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	231, 481
CspCI	CAANNNNNGTGG	4 cut(s)	291, 326, 492, 527
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	8 cut(s)	13, 67, 72, 94, 358, 384, 543, 556
CviKI_1	RGCY	8 cut(s)	13, 67, 72, 94, 358, 384, 543, 556
CviQI	GTAC	2 cut(s)	231, 481
DpnI	GATC	2 cut(s)	61, 564
DpnII	GATC	2 cut(s)	59, 562
DraIII	CACNNNGTG	1 cut(s)	322
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	2 cut(s)	72, 556
Eco24I	GRGCYC	2 cut(s)	74, 558
Eco31I	GGTCTC	1 cut(s)	37
Eco53kI	GAGCTC	2 cut(s)	72, 556
Eco57I	CTGAAG	1 cut(s)	591
EcoICRI	GAGCTC	2 cut(s)	72, 556
EcoRII	CCWGG	2 cut(s)	253, 483
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	2 cut(s)	74, 558
FaeI	CATG	1 cut(s)	263
FatI	CATG	1 cut(s)	259
FokI	GGATG	2 cut(s)	500, 551
FriOI	GRGCYC	2 cut(s)	74, 558
FspBI	CTAG	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	13, 67
Hin1II	CATG	1 cut(s)	263
HinfI	GANTC	3 cut(s)	82, 287, 297
HphI	GGTGA	2 cut(s)	197, 400
Hpy166II	GTNNAC	2 cut(s)	231, 481
Hpy188I	TCNGA	2 cut(s)	281, 571
Hpy188III	TCNNGA	2 cut(s)	416, 523
Hpy8I	GTNNAC	2 cut(s)	231, 481
HpyAV	CCTTC	2 cut(s)	113, 576
HpyCH4III	ACNGT	2 cut(s)	217, 320
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	59, 562
LmnI	GCTCC	2 cut(s)	313, 381
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	1 cut(s)	336
MalI	GATC	2 cut(s)	61, 564
MboI	GATC	2 cut(s)	59, 562
MboII	GAAGA	2 cut(s)	15, 584
MhlI	GDGCHC	3 cut(s)	74, 318, 558
MluCI	AATT	2 cut(s)	368, 448
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	2 cut(s)	259, 572
MnlI	CCTC	2 cut(s)	451, 508
Mph1103I	ATGCAT	1 cut(s)	406
MroXI	GAANNNNTTC	2 cut(s)	249, 286
MseI	TTAA	1 cut(s)	272
MspR9I	CCNGG	2 cut(s)	255, 485
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	255, 485
MwoI	GCNNNNNNNGC	1 cut(s)	553
NdeII	GATC	2 cut(s)	59, 562
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	406
PctI	GAATGC	1 cut(s)	404
PdmI	GAANNNNTTC	2 cut(s)	249, 286
PfeI	GAWTC	2 cut(s)	287, 297
PfoI	TCCNGGA	1 cut(s)	253
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PsiI	TTATAA	2 cut(s)	222, 585
Psp124BI	GAGCTC	2 cut(s)	74, 558
Psp6I	CCWGG	2 cut(s)	253, 483
PspGI	CCWGG	2 cut(s)	253, 483
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	12
RsaI	GTAC	2 cut(s)	232, 482
RsaNI	GTAC	2 cut(s)	231, 481
SacI	GAGCTC	2 cut(s)	74, 558
SaqAI	TTAA	1 cut(s)	272
Sau3AI	GATC	2 cut(s)	59, 562
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	255, 485
SduI	GDGCHC	3 cut(s)	74, 318, 558
SetI	ASST	6 cut(s)	74, 386, 413, 486, 558, 592
SfaNI	GCATC	1 cut(s)	478
Sse9I	AATT	2 cut(s)	368, 448
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	2 cut(s)	74, 558
StyD4I	CCNGG	2 cut(s)	253, 483
TaaI	ACNGT	2 cut(s)	217, 320
TaqI	TCGA	4 cut(s)	26, 80, 290, 474
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	368, 448
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	287, 297
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	3 cut(s)	21, 128, 177
TspRI	CASTG	1 cut(s)	325
XapI	RAATTY	1 cut(s)	448
XmnI	GAANNNNTTC	2 cut(s)	249, 286
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.