No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g30421 |
| malus_domestica | MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1 |
| rosa_chinensis | RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301 |
| rosa_laevigata | RLG00000024686 |
| rosa_multiflora | Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016 |
| rosa_roxburghii | Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650 |
| rosa_rugosa | Rorug05G0348000 Rorug07G0144800 Rorug07G0144900 |
| rosa_samantha | Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 149 |
| AciI | CCGC | 1 cut(s) | 226 |
| AcyI | GRCGYC | 1 cut(s) | 35 |
| AfaI | GTAC | 1 cut(s) | 251 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 149 |
| AgsI | TTSAA | 1 cut(s) | 260 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 136, 168 |
| AluBI | AGCT | 1 cut(s) | 147 |
| AluI | AGCT | 1 cut(s) | 147 |
| Alw26I | GTCTC | 1 cut(s) | 112 |
| Ama87I | CYCGRG | 1 cut(s) | 76 |
| AoxI | GGCC | 2 cut(s) | 79, 140 |
| AspS9I | GGNCC | 1 cut(s) | 79 |
| AvaI | CYCGRG | 1 cut(s) | 76 |
| BceAI | ACGGC | 1 cut(s) | 48 |
| BcoDI | GTCTC | 1 cut(s) | 112 |
| BfaI | CTAG | 1 cut(s) | 111 |
| BmeT110I | CYCGRG | 1 cut(s) | 76 |
| BmgT120I | GGNCC | 1 cut(s) | 79 |
| BsaBI | GATNNNNATC | 1 cut(s) | 53 |
| BsaHI | GRCGYC | 1 cut(s) | 35 |
| BsaI | GGTCTC | 1 cut(s) | 112 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 149 |
| Bse1I | ACTGG | 1 cut(s) | 257 |
| Bse8I | GATNNNNATC | 1 cut(s) | 53 |
| BseJI | GATNNNNATC | 1 cut(s) | 53 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 149 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseNI | ACTGG | 1 cut(s) | 257 |
| BshFI | GGCC | 2 cut(s) | 81, 142 |
| BsiHKCI | CYCGRG | 1 cut(s) | 76 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 149 |
| BsmAI | GTCTC | 1 cut(s) | 112 |
| BsnI | GGCC | 2 cut(s) | 81, 142 |
| Bso31I | GGTCTC | 1 cut(s) | 112 |
| BsoBI | CYCGRG | 1 cut(s) | 76 |
| Bsp143I | GATC | 2 cut(s) | 54, 134 |
| BspACI | CCGC | 1 cut(s) | 226 |
| BspANI | GGCC | 2 cut(s) | 81, 142 |
| BspCNI | CTCAG | 1 cut(s) | 248 |
| BspTNI | GGTCTC | 1 cut(s) | 112 |
| BsrI | ACTGG | 1 cut(s) | 257 |
| BssMI | GATC | 2 cut(s) | 54, 134 |
| BssNI | GRCGYC | 1 cut(s) | 35 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| BstACI | GRCGYC | 1 cut(s) | 35 |
| BstDEI | CTNAG | 1 cut(s) | 235 |
| BstKTI | GATC | 2 cut(s) | 57, 137 |
| BstMAI | GTCTC | 1 cut(s) | 112 |
| BstMBI | GATC | 2 cut(s) | 54, 134 |
| BsuRI | GGCC | 2 cut(s) | 81, 142 |
| Cfr13I | GGNCC | 1 cut(s) | 79 |
| CseI | GACGC | 1 cut(s) | 24 |
| Csp6I | GTAC | 1 cut(s) | 250 |
| CviJI | RGCY | 3 cut(s) | 81, 142, 147 |
| CviKI_1 | RGCY | 3 cut(s) | 81, 142, 147 |
| CviQI | GTAC | 1 cut(s) | 250 |
| DdeI | CTNAG | 1 cut(s) | 235 |
| DpnI | GATC | 2 cut(s) | 56, 136 |
| DpnII | GATC | 2 cut(s) | 54, 134 |
| Eco31I | GGTCTC | 1 cut(s) | 112 |
| Eco88I | CYCGRG | 1 cut(s) | 76 |
| FaiI | YATR | 3 cut(s) | 67, 69, 185 |
| FspBI | CTAG | 1 cut(s) | 111 |
| HaeIII | GGCC | 2 cut(s) | 81, 142 |
| HgaI | GACGC | 1 cut(s) | 24 |
| Hin1I | GRCGYC | 1 cut(s) | 35 |
| HinfI | GANTC | 4 cut(s) | 20, 157, 189, 256 |
| Hpy166II | GTNNAC | 1 cut(s) | 39 |
| Hpy188I | TCNGA | 1 cut(s) | 238 |
| Hpy188III | TCNNGA | 1 cut(s) | 111 |
| Hpy8I | GTNNAC | 1 cut(s) | 39 |
| Hpy99I | CGWCG | 5 cut(s) | 10, 16, 94, 127, 130 |
| HpyAV | CCTTC | 1 cut(s) | 188 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyF3I | CTNAG | 1 cut(s) | 235 |
| Hsp92I | GRCGYC | 1 cut(s) | 35 |
| Kzo9I | GATC | 2 cut(s) | 54, 134 |
| LpnPI | CCDG | 2 cut(s) | 135, 238 |
| MaeI | CTAG | 1 cut(s) | 111 |
| MalI | GATC | 2 cut(s) | 56, 136 |
| MboI | GATC | 2 cut(s) | 54, 134 |
| MboII | GAAGA | 1 cut(s) | 64 |
| MluCI | AATT | 3 cut(s) | 214, 260, 273 |
| MlyI | GAGTC | 1 cut(s) | 151 |
| MseI | TTAA | 1 cut(s) | 276 |
| MslI | CAYNNNNRTG | 1 cut(s) | 44 |
| NdeII | GATC | 2 cut(s) | 54, 134 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 38, 122 |
| PfeI | GAWTC | 3 cut(s) | 20, 189, 256 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 149 |
| PleI | GAGTC | 1 cut(s) | 151 |
| PpsI | GAGTC | 1 cut(s) | 151 |
| PspPI | GGNCC | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 251 |
| RsaNI | GTAC | 1 cut(s) | 250 |
| RseI | CAYNNNNRTG | 1 cut(s) | 44 |
| SaqAI | TTAA | 1 cut(s) | 276 |
| Sau3AI | GATC | 2 cut(s) | 54, 134 |
| Sau96I | GGNCC | 1 cut(s) | 79 |
| SchI | GAGTC | 1 cut(s) | 151 |
| SetI | ASST | 3 cut(s) | 107, 149, 172 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 44 |
| Sse9I | AATT | 3 cut(s) | 214, 260, 273 |
| SsiI | CCGC | 1 cut(s) | 226 |
| SspMI | CTAG | 1 cut(s) | 111 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaqI | TCGA | 2 cut(s) | 92, 155 |
| TaqII | GACCGA | 1 cut(s) | 136 |
| TasI | AATT | 3 cut(s) | 214, 260, 273 |
| TatI | WGTACW | 1 cut(s) | 249 |
| TfiI | GAWTC | 3 cut(s) | 20, 189, 256 |
| Tru1I | TTAA | 1 cut(s) | 276 |
| Tru9I | TTAA | 1 cut(s) | 276 |
| TspDTI | ATGAA | 2 cut(s) | 65, 87 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 149 |
| XbaI | TCTAGA | 1 cut(s) | 110 |
| XspI | CTAG | 1 cut(s) | 111 |