Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Reverse (-)

41090139 .. 41092789

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG191000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCCGCCGGCGACAGAGGAACCTTACATGACGGCGTCCTCGATGACGATGGTGATGATCGACAAGATTTATGAGTTCTCGGCCCCGTGCTTCTTCGATTTCATCAAGGACGAGACCGACGACGACAAGATCAATGCCGAACTCAGGTCCCCGTCTCGTGTTAGCGCTACAAACAACGAAGAGGCTGCTGCCAAGGTAGCTGCAGCTAATGCCGACAGTGGAGCTCCAACAATGATGACTAATAGGTATCCTGTCAACATAAACAAACAAAAAGACCTGATCAATCTTTTGGGAGCTACCTATGCTGTTGTTCTTTTCCTTGCAGCTAGCAATGCCTCTGTCGTGCAATCTGTTGTGGCGGTTGAGCAGCATGAATGTACTCAGGGTTTCCTTATGCATTTGCTCAAGTTTCTGGTGCTGCAGGTGGCTGTTGAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

146

Amino Acids

15.93

Weight (kDa)

4.59

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	412
Acc36I	ACCTGC	1 cut(s)	412
AciI	CCGC	2 cut(s)	5, 359
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	379
AfeI	AGCGCT	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	434
AluBI	AGCT	5 cut(s)	200, 206, 224, 296, 326
AluI	AGCT	5 cut(s)	200, 206, 224, 296, 326
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	107, 159
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	7 cut(s)	185, 188, 200, 203, 323, 367, 418
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	82, 147
AsuHPI	GGTGA	1 cut(s)	64
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	7 cut(s)	172, 175, 187, 215, 335, 379, 405
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciVI	GTATCC	1 cut(s)	258
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	107, 159
BfaI	CTAG	2 cut(s)	327, 439
BfmI	CTRYAG	2 cut(s)	201, 419
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	412
BfuI	GTATCC	1 cut(s)	258
BisI	GCNGC	8 cut(s)	5, 186, 189, 201, 204, 324, 368, 419
BlsI	GCNGC	8 cut(s)	6, 187, 190, 202, 205, 325, 369, 420
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	82, 147
BmiI	GGNNCC	3 cut(s)	21, 84, 149
BmtI	GCTAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	157, 395
BseXI	GCAGC	7 cut(s)	172, 175, 187, 215, 335, 379, 405
BshFI	GGCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	107, 159
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	57, 129, 279
BspACI	CCGC	2 cut(s)	5, 359
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	156, 394
BspLI	GGNNCC	3 cut(s)	21, 84, 149
BspMAI	CTGCAG	2 cut(s)	205, 423
BspMI	ACCTGC	1 cut(s)	412
BspOI	GCTAGC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	57, 129, 279
BssNI	GRCGYC	1 cut(s)	35
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	9, 328
BstDEI	CTNAG	2 cut(s)	143, 381
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	60, 132, 282
BstMAI	GTCTC	2 cut(s)	107, 159
BstMBI	GATC	3 cut(s)	57, 129, 279
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 209, 302, 332
BstSFI	CTRYAG	2 cut(s)	201, 419
BstV1I	GCAGC	7 cut(s)	172, 175, 187, 215, 335, 379, 405
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	9, 328
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	82, 147
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	2 cut(s)	28, 371
CviJI	RGCY	8 cut(s)	83, 185, 200, 206, 224, 296, 326, 428
CviKI_1	RGCY	8 cut(s)	83, 185, 200, 206, 224, 296, 326, 428
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	143, 381
DpnI	GATC	3 cut(s)	59, 131, 281
DpnII	GATC	3 cut(s)	57, 129, 279
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	147
Eco47III	AGCGCT	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	2 cut(s)	31, 374
FaiI	YATR	6 cut(s)	29, 72, 260, 303, 372, 395
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	2 cut(s)	27, 370
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	8 cut(s)	5, 186, 189, 201, 204, 324, 368, 419
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	8 cut(s)	5, 186, 189, 201, 204, 324, 368, 419
FspBI	CTAG	2 cut(s)	327, 439
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	8 cut(s)	5, 186, 189, 201, 204, 324, 368, 419
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	31, 374
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	2 cut(s)	122, 125
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	5 cut(s)	203, 323, 346, 397, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 209, 302, 332
HpyF3I	CTNAG	2 cut(s)	143, 381
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	31, 374
HspAI	GCGC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	57, 129, 279
LmnI	GCTCC	3 cut(s)	221, 229, 293
LpnPI	CCDG	7 cut(s)	21, 130, 264, 290, 368, 398, 407
Lsp1109I	GCAGC	7 cut(s)	172, 175, 187, 215, 335, 379, 405
MaeI	CTAG	2 cut(s)	327, 439
MalI	GATC	3 cut(s)	59, 131, 281
MboI	GATC	3 cut(s)	57, 129, 279
MboII	GAAGA	2 cut(s)	85, 191
MhlI	GDGCHC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	10, 49, 175, 346
Mph1103I	ATGCAT	1 cut(s)	399
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	4 cut(s)	197, 209, 302, 332
NaeI	GCCGGC	1 cut(s)	9
NdeII	GATC	3 cut(s)	57, 129, 279
NgoMIV	GCCGGC	1 cut(s)	7
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	31, 374
NlaIV	GGNNCC	3 cut(s)	21, 84, 149
NmeAIII	GCCGAG	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	399
PaqCI	CACCTGC	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 117
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	434
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	8 cut(s)	6, 187, 190, 202, 205, 325, 369, 420
PpuMI	RGGWCCY	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	21, 84, 149
PspPI	GGNCC	2 cut(s)	82, 147
PspPPI	RGGWCCY	1 cut(s)	147
PstI	CTGCAG	2 cut(s)	205, 423
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	226
SatI	GCNGC	8 cut(s)	5, 186, 189, 201, 204, 324, 368, 419
Sau3AI	GATC	3 cut(s)	57, 129, 279
Sau96I	GGNCC	2 cut(s)	82, 147
SduI	GDGCHC	1 cut(s)	226
SfcI	CTRYAG	2 cut(s)	201, 419
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SsiI	CCGC	2 cut(s)	5, 359
SspMI	CTAG	2 cut(s)	327, 439
SstI	GAGCTC	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	41, 60, 96
TaqII	GACCGA	1 cut(s)	131
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	434
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	7 cut(s)	185, 188, 200, 203, 323, 367, 418
TspDTI	ATGAA	2 cut(s)	91, 387
TspRI	CASTG	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	147
XspI	CTAG	2 cut(s)	327, 439
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.