Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

16602326 .. 16604547

Gene Structure 2222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1078300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCTCTGTCCAACACCTCCAAGAAAAGGGTCTTCGGCATTACTTTCCAAACGATACAATGCAGGAACGATTCGACTGGAGTGGCCAACATATTGCAGCAGAGTGTGATATGTGGGTCAAGAAAGTACCCATTGAAAAGACCATTTGACGTGTTGGTTTTAAAGAGCTTCAGTACTTATATGTATTGTAAAGTCATGGCTGATAGGACCTATTACTCTGGTAATTGCACAACTACAAAGGAATTGCATAATTTCGTTGATCTACTCCCGATGCTGTCTTCTTTCCTAATTGTGTGGAGGACATCCAGATTTTCTGGCAACAGGGTTTGCGTTATGAGCTTAACGACCCATCCGAAGATTTATCTTATCAAGGTTGGACATTTGATGCATGTGCCCGGACTTGTCTTCAATCAGATGAAGAAATTCCAATTTTGGCCACTGGCGAGAGATGTACTGAAGCTTACTGCTCGACAGGCCGCTTTTCTGGACAGTACCTACAATTTTGACCATGCTGGGGATCCACAAATTATGCCCCAATTGACATTTGAGGACTTCAAGGAGTTCCACTGGAATAACTACCATCGCAGTAACGCAAGGATATGGTTTTATGGAAATGATGATCCAACTAAGCGTCTGCACATTTTGAGTGGTGACTTAGAGAAGAAAAACATGGTATGCCTCAGTTGGTTGCTCTGTGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031967 GO:0031974 GO:0031975 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

235

Amino Acids

27.21

Weight (kDa)

9.47

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	3 cut(s)	512, 525, 614
AcoI	YGGCCR	2 cut(s)	84, 434
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	154, 476
AfaI	GTAC	4 cut(s)	128, 175, 453, 493
AfiI	CCNNNNNNNGG	2 cut(s)	27, 514
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	136, 409, 556
AjiI	CACGTC	1 cut(s)	151
AluBI	AGCT	3 cut(s)	168, 339, 460
AluI	AGCT	3 cut(s)	168, 339, 460
Alw26I	GTCTC	2 cut(s)	9, 693
AlwI	GGATC	3 cut(s)	512, 525, 614
AoxI	GGCC	3 cut(s)	84, 434, 474
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	396
BalI	TGGCCA	2 cut(s)	86, 436
BamHI	GGATCC	1 cut(s)	517
BbsI	GAAGAC	3 cut(s)	25, 270, 397
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	2 cut(s)	357, 588
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	9, 693
BisI	GCNGC	2 cut(s)	98, 477
BlsI	GCNGC	2 cut(s)	99, 478
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	1 cut(s)	207
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	261, 375
BpiI	GAAGAC	3 cut(s)	25, 270, 397
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 514
Bse1I	ACTGG	3 cut(s)	82, 444, 572
BseGI	GGATG	2 cut(s)	302, 349
BseLI	CCNNNNNNNGG	2 cut(s)	27, 514
BseMII	CTCAG	1 cut(s)	694
BseNI	ACTGG	3 cut(s)	82, 444, 572
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	3 cut(s)	86, 436, 476
BsiSI	CCGG	1 cut(s)	396
BslI	CCNNNNNNNGG	2 cut(s)	27, 514
BsmAI	GTCTC	2 cut(s)	9, 693
BsnI	GGCC	3 cut(s)	86, 436, 476
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	259, 517, 619
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	3 cut(s)	86, 436, 476
BspCNI	CTCAG	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	3 cut(s)	512, 525, 614
BsrI	ACTGG	3 cut(s)	82, 444, 572
BssMI	GATC	3 cut(s)	259, 517, 619
Bst4CI	ACNGT	1 cut(s)	491
BstDEI	CTNAG	3 cut(s)	627, 655, 680
BstF5I	GGATG	2 cut(s)	302, 349
BstKTI	GATC	3 cut(s)	262, 520, 622
BstMAI	GTCTC	2 cut(s)	9, 693
BstMBI	GATC	3 cut(s)	259, 517, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 473
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	3 cut(s)	25, 270, 397
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	3 cut(s)	86, 436, 476
BtgZI	GCGATG	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	302, 349
BtsIMutI	CAGTG	2 cut(s)	437, 565
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	620
Csp6I	GTAC	4 cut(s)	127, 174, 452, 492
CviAII	CATG	4 cut(s)	196, 389, 509, 670
CviJI	RGCY	7 cut(s)	86, 168, 200, 339, 436, 460, 476
CviKI_1	RGCY	7 cut(s)	86, 168, 200, 339, 436, 460, 476
CviQI	GTAC	4 cut(s)	127, 174, 452, 492
DdeI	CTNAG	3 cut(s)	627, 655, 680
DpnI	GATC	3 cut(s)	261, 519, 621
DpnII	GATC	3 cut(s)	259, 517, 619
DraI	TTTAAA	1 cut(s)	162
EaeI	YGGCCR	2 cut(s)	84, 434
Eco47I	GGWCC	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	154, 476
EcoO109I	RGGNCCY	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	390
FaeI	CATG	4 cut(s)	199, 392, 512, 673
FatI	CATG	4 cut(s)	195, 388, 508, 669
Fnu4HI	GCNGC	2 cut(s)	98, 477
FokI	GGATG	2 cut(s)	289, 336
Fsp4HI	GCNGC	2 cut(s)	98, 477
GluI	GCNGC	2 cut(s)	98, 477
GsaI	CCCAGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	86, 436, 476
HapII	CCGG	1 cut(s)	396
HgaI	GACGC	1 cut(s)	620
Hin1II	CATG	4 cut(s)	199, 392, 512, 673
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	1 cut(s)	662
Hpy188I	TCNGA	2 cut(s)	354, 414
Hpy188III	TCNNGA	4 cut(s)	120, 268, 306, 485
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	6 cut(s)	63, 97, 228, 247, 388, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 473
HpyF3I	CTNAG	3 cut(s)	627, 655, 680
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	199, 392, 512, 673
Kzo9I	GATC	3 cut(s)	259, 517, 619
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	261, 375
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	587, 650
MalI	GATC	3 cut(s)	261, 519, 621
MboI	GATC	3 cut(s)	259, 517, 619
MboII	GAAGA	6 cut(s)	25, 270, 367, 397, 430, 673
MfeI	CAATTG	1 cut(s)	536
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	2 cut(s)	86, 436
MluCI	AATT	9 cut(s)	223, 242, 250, 288, 422, 428, 499, 525, 536
MluNI	TGGCCA	2 cut(s)	86, 436
MmeI	TCCRAC	3 cut(s)	36, 355, 647
MnlI	CCTC	4 cut(s)	28, 291, 541, 689
Mox20I	TGGCCA	2 cut(s)	86, 436
Mph1103I	ATGCAT	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	422
MscI	TGGCCA	2 cut(s)	86, 436
MseI	TTAA	2 cut(s)	161, 341
Msp20I	TGGCCA	2 cut(s)	86, 436
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	336, 473
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	3 cut(s)	259, 517, 619
NlaIII	CATG	4 cut(s)	199, 392, 512, 673
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	650
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	99, 478
PpuMI	RGGWCCY	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	207
PspPPI	RGGWCCY	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	4 cut(s)	128, 175, 453, 493
RsaNI	GTAC	4 cut(s)	127, 174, 452, 492
SaqAI	TTAA	2 cut(s)	161, 341
SatI	GCNGC	2 cut(s)	98, 477
Sau3AI	GATC	3 cut(s)	259, 517, 619
Sau96I	GGNCC	1 cut(s)	207
ScaI	AGTACT	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	8 cut(s)	20, 153, 170, 212, 341, 375, 462, 497
SfaNI	GCATC	2 cut(s)	261, 375
SinI	GGWCC	1 cut(s)	207
Sse9I	AATT	9 cut(s)	223, 242, 250, 288, 422, 428, 499, 525, 536
SsiI	CCGC	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	74, 469
TasI	AATT	9 cut(s)	223, 242, 250, 288, 422, 428, 499, 525, 536
TatI	WGTACW	2 cut(s)	173, 451
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	161, 341
Tru9I	TTAA	2 cut(s)	161, 341
TscAI	CASTG	2 cut(s)	444, 572
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	444, 572
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.