Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

1525869 .. 1527613

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG009800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 392 bp

ATGCCGCCGGCGATGGAGGAACCTTACACGACGGCATCCTCGATGACGTTGATGATGATCGACACGATTTATGAGTTCTCGGCCCAGTGCTTCTTCGATTTCATCAAGGACGAGACCGACGACAACAAGATCAATGCCGAACTCAGGATGACTAATAGGTATCCTGTCAACATAAACAAACAAAAAGACCTGATCAATCTTTTGGGAGCTACCTATGCTGTTGTTCTTTTCCTTGCAGCTAGCAATGCCTCTGTCGTGCAATCTATTGTGGTGGTTGAGCAGCATGAATGTACTCAGGGTTTCCTTATGCATTTGCTCAAGTGGCTGTTGAATCCTAGGAACAAGGCATTGTTAGAGATTTGGAAAAAGTCTGGTTCCTACTCTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

130

Amino Acids

14.82

Weight (kDa)

5.29

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	2 cut(s)	209, 239
AluI	AGCT	2 cut(s)	209, 239
Alw26I	GTCTC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	236, 280
AspA2I	CCTAGG	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	239
AvrII	CCTAGG	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	248, 292
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	171
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	240, 336
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	3 cut(s)	5, 237, 281
BlnI	CCTAGG	1 cut(s)	335
BlsI	GCNGC	3 cut(s)	6, 238, 282
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	21, 376
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	44
BmtI	GCTAGC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	35, 153
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	157, 308
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	248, 292
BshFI	GGCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	57, 129, 192
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	156, 307
BspLI	GGNNCC	2 cut(s)	21, 376
BspOI	GCTAGC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	3 cut(s)	57, 129, 192
BssT1I	CCWWGG	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	9, 241
BstDEI	CTNAG	2 cut(s)	143, 294
BstF5I	GGATG	2 cut(s)	35, 153
BstKTI	GATC	3 cut(s)	60, 132, 195
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	57, 129, 192
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 245, 322
BstV1I	GCAGC	2 cut(s)	248, 292
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	35, 153
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	9, 241
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	4 cut(s)	83, 209, 239, 325
CviKI_1	RGCY	4 cut(s)	83, 209, 239, 325
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	2 cut(s)	143, 294
DpnI	GATC	3 cut(s)	59, 131, 194
DpnII	GATC	3 cut(s)	57, 129, 192
Eco130I	CCWWGG	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	1 cut(s)	287
FaiI	YATR	5 cut(s)	72, 173, 216, 285, 308
FatI	CATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	5, 237, 281
FokI	GGATG	2 cut(s)	22, 160
Fsp4HI	GCNGC	3 cut(s)	5, 237, 281
FspBI	CTAG	2 cut(s)	240, 336
GluI	GCNGC	3 cut(s)	5, 237, 281
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	2 cut(s)	34, 122
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	236, 259, 310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 245, 322
HpyF3I	CTNAG	2 cut(s)	143, 294
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	287
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	57, 129, 192
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	7 cut(s)	21, 98, 130, 177, 203, 281, 357
Lsp1109I	GCAGC	2 cut(s)	248, 292
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	2 cut(s)	240, 336
MaeII	ACGT	1 cut(s)	47
MalI	GATC	3 cut(s)	59, 131, 194
MboI	GATC	3 cut(s)	57, 129, 192
MboII	GAAGA	1 cut(s)	85
MnlI	CCTC	3 cut(s)	10, 49, 259
Mph1103I	ATGCAT	1 cut(s)	312
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	215, 245, 322
NaeI	GCCGGC	1 cut(s)	9
NdeII	GATC	3 cut(s)	57, 129, 192
NgoMIV	GCCGGC	1 cut(s)	7
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	2 cut(s)	21, 376
NmeAIII	GCCGAG	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 117
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	6, 238, 282
PspN4I	GGNNCC	2 cut(s)	21, 376
PspPI	GGNCC	1 cut(s)	82
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SatI	GCNGC	3 cut(s)	5, 237, 281
Sau3AI	GATC	3 cut(s)	57, 129, 192
Sau96I	GGNCC	1 cut(s)	82
SetI	ASST	7 cut(s)	25, 50, 161, 192, 211, 215, 241
SfaNI	GCATC	1 cut(s)	44
SgrAI	CRCCGGYG	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	240, 336
StyI	CCWWGG	1 cut(s)	335
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	3 cut(s)	41, 60, 96
TaqII	GACCGA	1 cut(s)	131
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	1 cut(s)	92
TseI	GCWGC	2 cut(s)	236, 280
TspDTI	ATGAA	2 cut(s)	91, 300
TspRI	CASTG	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	335
XspI	CTAG	2 cut(s)	240, 336
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.