Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004230.1

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Reverse (-)

78491 .. 79868

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004230.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atggagagagcagctctccttcgctcttctctttcctgcactaatagagccttcttctcattccgcctcccatccatcccattctttagattctctcgctcctcctcctcttcttcttctgctctcagaacccatcgccgccgtccgattctccgaccctcctccggccgccccctccgccgcaccagcctcttaccactccccgccgcttccacccacttcgccacgcgcttctcctccctctccccacgcgctgtcgccacgcccttaaccccctcgccgtcagagttctctggggtttccgatgaggttgcggagcagctgggattcgagaaggtcgccgaagagtttataggagagtgtaaatccaaagctctgctctttaagcacaaaaagaccggtgctcaggtgatctctgtttccaacgacgatgagaacaaggttttcggcattgttttccgaacaccaccaaatgattcgactggaatcccacacattttggagcacagtgtgttgtgtggttctaggaaataccctttgaaagagccgtttgtggaactgttgaaagggagcttgaatacttttctcaatgcattcacctatcctgataggacttgctaccctgttgcctccacaaattcaaaggatttctataatctggtcgatgtgtacctggatgctgtgttctttccaaaatgcgtggaggatttccagactttccagcaggagggctggcactatgagctcaacgatccttctgaagacatatcttataaaggagttgttttcaatgagatgaaaggggtgtactcccagcctgataatatattaggacggattgctcaacaggcaagtttcccctgcaacctaaagtttttgttctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031967 GO:0031974 GO:0031975 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

295

Amino Acids

33.22

Weight (kDa)

8.99

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
AccII	CGCG	2 cut(s)	229, 252
AciI	CCGC	8 cut(s)	64, 139, 169, 178, 181, 204, 207, 314
AclWI	GGATC	1 cut(s)	746
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	637
AcuI	CTGAAG	1 cut(s)	780
AdeI	CACNNNGTG	1 cut(s)	511
AfaI	GTAC	2 cut(s)	671, 809
AfiI	CCNNNNNNNGG	2 cut(s)	164, 727
AgeI	ACCGGT	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	541, 565, 577, 642, 790
AjnI	CCWGG	1 cut(s)	672
AloI	GAACNNNNNNTCC	2 cut(s)	668, 700
AluBI	AGCT	5 cut(s)	14, 322, 374, 573, 745
AluI	AGCT	5 cut(s)	14, 322, 374, 573, 745
Alw21I	GWGCWC	3 cut(s)	406, 507, 747
AlwI	GGATC	1 cut(s)	746
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	11, 319
ApoI	RAATTY	1 cut(s)	637
AsiGI	ACCGGT	1 cut(s)	398
AspLEI	GCGC	2 cut(s)	231, 254
AsuHPI	GGTGA	2 cut(s)	421, 589
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	1 cut(s)	768
Bbv12I	GWGCWC	3 cut(s)	406, 507, 747
BbvI	GCAGC	2 cut(s)	23, 331
BccI	CCATC	3 cut(s)	79, 83, 141
BceAI	ACGGC	3 cut(s)	126, 265, 532
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	674
BfaI	CTAG	1 cut(s)	525
BisI	GCNGC	6 cut(s)	12, 139, 169, 181, 207, 320
BlsI	GCNGC	6 cut(s)	13, 140, 170, 182, 208, 321
Bme1390I	CCNGG	1 cut(s)	674
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	768
BplI	GAGNNNNNCTC	2 cut(s)	30, 32
Bpu10I	CCTNAGC	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 727
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	674
BseGI	GGATG	3 cut(s)	71, 75, 682
BseLI	CCNNNNNNNGG	2 cut(s)	164, 727
BseMII	CTCAG	2 cut(s)	139, 419
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	5 cut(s)	91, 94, 97, 151, 226
BseX3I	CGGCCG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	23, 331
BseYI	CCCAGC	2 cut(s)	322, 813
BsgI	GTGCAG	1 cut(s)	22
Bsh1236I	CGCG	2 cut(s)	229, 252
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	168
BshTI	ACCGGT	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	3 cut(s)	406, 507, 747
BsiSI	CCGG	2 cut(s)	165, 399
BslI	CCNNNNNNNGG	2 cut(s)	164, 727
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	3 cut(s)	406, 507, 747
Bsp143I	GATC	2 cut(s)	411, 751
BspACI	CCGC	8 cut(s)	64, 139, 169, 178, 181, 204, 207, 314
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	138, 418
BspFNI	CGCG	2 cut(s)	229, 252
BspPI	GGATC	1 cut(s)	746
BspQI	GCTCTTC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	398
BssMI	GATC	2 cut(s)	411, 751
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	2 cut(s)	509, 561
Bst6I	CTCTTC	3 cut(s)	31, 115, 339
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	2 cut(s)	125, 405
BstF5I	GGATG	3 cut(s)	71, 75, 682
BstFNI	CGCG	2 cut(s)	229, 252
BstHHI	GCGC	2 cut(s)	231, 254
BstKTI	GATC	2 cut(s)	414, 754
BstMBI	GATC	2 cut(s)	411, 751
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 186, 385, 742, 848
BstNI	CCWGG	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	672
BstUI	CGCG	2 cut(s)	229, 252
BstV1I	GCAGC	2 cut(s)	23, 331
BstV2I	GAAGAC	1 cut(s)	768
BstZI	CGGCCG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	119
BtsCI	GGATG	3 cut(s)	71, 75, 682
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	734
CfoI	GCGC	2 cut(s)	231, 254
Cfr10I	RCCGGY	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	670, 808
CspAI	ACCGGT	1 cut(s)	398
CspCI	CAANNNNNGTGG	4 cut(s)	480, 515, 681, 716
CviQI	GTAC	2 cut(s)	670, 808
DdeI	CTNAG	2 cut(s)	125, 405
DpnI	GATC	2 cut(s)	413, 753
DpnII	GATC	2 cut(s)	411, 751
DraIII	CACNNNGTG	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
Eam1104I	CTCTTC	3 cut(s)	31, 115, 339
EarI	CTCTTC	3 cut(s)	31, 115, 339
EciI	GGCGGA	2 cut(s)	53, 167
Ecl136II	GAGCTC	1 cut(s)	745
EclXI	CGGCCG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	747
Eco52I	CGGCCG	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	780
EcoICRI	GAGCTC	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	747
FaiI	YATR	6 cut(s)	353, 654, 741, 767, 774, 827
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	6 cut(s)	12, 139, 169, 181, 207, 320
FokI	GGATG	3 cut(s)	58, 62, 689
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	6 cut(s)	12, 139, 169, 181, 207, 320
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	2 cut(s)	230, 253
GluI	GCNGC	6 cut(s)	12, 139, 169, 181, 207, 320
GsaI	CCCAGC	2 cut(s)	326, 817
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	2 cut(s)	165, 399
HhaI	GCGC	2 cut(s)	231, 254
Hin6I	GCGC	2 cut(s)	229, 252
HinP1I	GCGC	2 cut(s)	229, 252
HinfI	GANTC	5 cut(s)	90, 148, 327, 476, 486
HpaII	CCGG	2 cut(s)	165, 399
HphI	GGTGA	2 cut(s)	421, 589
Hpy166II	GTNNAC	2 cut(s)	670, 808
Hpy188I	TCNGA	7 cut(s)	128, 147, 155, 286, 304, 461, 760
Hpy188III	TCNNGA	3 cut(s)	331, 605, 712
Hpy8I	GTNNAC	2 cut(s)	670, 808
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	29, 61, 328, 765
HpyCH4III	ACNGT	2 cut(s)	509, 561
HpyCH4V	TGCA	3 cut(s)	39, 593, 864
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 186, 385, 742, 848
HpyF3I	CTNAG	2 cut(s)	125, 405
HspAI	GCGC	2 cut(s)	229, 252
Kzo9I	GATC	2 cut(s)	411, 751
LguI	GCTCTTC	1 cut(s)	31
LmnI	GCTCC	4 cut(s)	104, 316, 502, 570
Lsp1109I	GCAGC	2 cut(s)	23, 331
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	525
MalI	GATC	2 cut(s)	413, 753
MboI	GATC	2 cut(s)	411, 751
MboII	GAAGA	7 cut(s)	18, 46, 102, 105, 108, 356, 773
MhlI	GDGCHC	3 cut(s)	406, 507, 747
MluCI	AATT	1 cut(s)	637
MmeI	TCCRAC	2 cut(s)	178, 447
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	2 cut(s)	269, 384
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	2 cut(s)	165, 399
MspR9I	CCNGG	1 cut(s)	674
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	674
MvnI	CGCG	2 cut(s)	229, 252
MwoI	GCNNNNNNNGC	5 cut(s)	177, 186, 385, 742, 848
NdeII	GATC	2 cut(s)	411, 751
NsiI	ATGCAT	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	31
PctI	GAATGC	1 cut(s)	593
PfeI	GAWTC	5 cut(s)	90, 148, 327, 476, 486
PinAI	ACCGGT	1 cut(s)	398
PkrI	GCNGC	6 cut(s)	13, 140, 170, 182, 208, 321
PsiI	TTATAA	1 cut(s)	774
Psp124BI	GAGCTC	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	672
PspFI	CCCAGC	2 cut(s)	322, 813
PspGI	CCWGG	1 cut(s)	672
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	2 cut(s)	671, 809
RsaNI	GTAC	2 cut(s)	670, 808
SacI	GAGCTC	1 cut(s)	747
SapI	GCTCTTC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	269, 384
SatI	GCNGC	6 cut(s)	12, 139, 169, 181, 207, 320
Sau3AI	GATC	2 cut(s)	411, 751
ScrFI	CCNGG	1 cut(s)	674
SduI	GDGCHC	3 cut(s)	406, 507, 747
SfaNI	GCATC	1 cut(s)	667
Sse9I	AATT	1 cut(s)	637
SsiI	CCGC	8 cut(s)	64, 139, 169, 178, 181, 204, 207, 314
SspMI	CTAG	1 cut(s)	525
SstI	GAGCTC	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	509, 561
TaqI	TCGA	3 cut(s)	330, 479, 663
TasI	AATT	1 cut(s)	637
TatI	WGTACW	1 cut(s)	807
TauI	GCSGC	4 cut(s)	141, 171, 183, 209
TfiI	GAWTC	5 cut(s)	90, 148, 327, 476, 486
Tru1I	TTAA	2 cut(s)	269, 384
Tru9I	TTAA	2 cut(s)	269, 384
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	2 cut(s)	11, 319
TspDTI	ATGAA	1 cut(s)	812
TspGWI	ACGGA	1 cut(s)	850
TspRI	CASTG	1 cut(s)	514
XapI	RAATTY	1 cut(s)	637
XspI	CTAG	1 cut(s)	525
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.