Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

30876718 .. 30879387

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG299500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCGTCGGCGACGAAAGAACCCAACACGATGACGTCCTCGACGATGATGATGATTGACGAGATTTATGAGTTCTCAGCCCCGCGCTTCTTCGATTTCATCAAGGACGAGTCTGACGACGACAAGATCAAGGCCGAGCTTTGGTTCGATTCCCTTCCCTGTGGATTAGAGAAGCTTGGTGGAGCAGAACAAGGTGAATTTCATCCACCCACGTCACGAATGACCAATTATGTTGTGTTTAAATTCGGAGAGCTTACTAGGTCTTACAATGATTCCTCAAATTCCTTTGGAATTAATTCCATTAAGAGGTCTTACTATCTTGGCTATCTAGGCTTCACTTCAGAATGCAGTGGTATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

120

Amino Acids

13.58

Weight (kDa)

4.59

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccII	CGCG	1 cut(s)	85
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	3 cut(s)	197, 242, 280
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	141, 306
AjiI	CACGTC	1 cut(s)	213
AluBI	AGCT	3 cut(s)	139, 175, 253
AluI	AGCT	3 cut(s)	139, 175, 253
AoxI	GGCC	1 cut(s)	132
ApoI	RAATTY	3 cut(s)	197, 242, 280
AseI	ATTAAT	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	206
BfaI	CTAG	2 cut(s)	258, 329
BmgBI	CACGTC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 306
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	141, 306
BseMII	CTCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	141, 306
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	89
BspFNI	CGCG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	359
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	355
CciI	TCATGA	1 cut(s)	359
CfoI	GCGC	1 cut(s)	87
CviAII	CATG	1 cut(s)	360
CviJI	RGCY	7 cut(s)	80, 134, 139, 175, 253, 324, 333
CviKI_1	RGCY	7 cut(s)	80, 134, 139, 175, 253, 324, 333
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DraI	TTTAAA	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	324
FaeI	CATG	1 cut(s)	363
FaiI	YATR	3 cut(s)	69, 231, 361
FatI	CATG	1 cut(s)	359
FauI	CCCGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	189
FspBI	CTAG	2 cut(s)	258, 329
GlaI	GCGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	363
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	3 cut(s)	110, 149, 272
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	115, 248, 343
Hpy188III	TCNNGA	2 cut(s)	216, 360
Hpy99I	CGWCG	4 cut(s)	10, 16, 46, 122
HpyAV	CCTTC	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	35, 212
HpyCH4V	TGCA	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	2 cut(s)	35, 212
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	363
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	1 cut(s)	172
MaeI	CTAG	2 cut(s)	258, 329
MaeII	ACGT	2 cut(s)	35, 212
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	6 cut(s)	197, 226, 242, 280, 291, 295
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	49, 286, 300
MroXI	GAANNNNTTC	1 cut(s)	295
MseI	TTAA	3 cut(s)	240, 294, 303
Mva1269I	GAATGC	1 cut(s)	350
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	1 cut(s)	363
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	213
PagI	TCATGA	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 114
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	149, 272
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PshBI	ATTAAT	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	240, 294, 303
Sau3AI	GATC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	119
SetI	ASST	8 cut(s)	38, 141, 177, 196, 215, 255, 263, 311
Sse9I	AATT	6 cut(s)	197, 226, 242, 280, 291, 295
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	258, 329
TaiI	ACGT	2 cut(s)	38, 215
TaqI	TCGA	3 cut(s)	41, 93, 147
TasI	AATT	6 cut(s)	197, 226, 242, 280, 291, 295
TfiI	GAWTC	2 cut(s)	149, 272
Tru1I	TTAA	3 cut(s)	240, 294, 303
Tru9I	TTAA	3 cut(s)	240, 294, 303
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	3 cut(s)	88, 191, 348
TspRI	CASTG	1 cut(s)	355
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	3 cut(s)	197, 242, 280
XmnI	GAANNNNTTC	1 cut(s)	295
XspI	CTAG	2 cut(s)	258, 329
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.