Rh1DG101900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003457
Physical Location & Seq
Reverse (-)
19045999 .. 19047726
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG101900.1

Sequence Viewer

Length: 315 bp
ATGCCGCCGACGACGGTGGAATCTAACACAACGGCGTCCACGACAATGATGAAGATCAATGAGATTTATAAGTTCTCGGGCCACGCTTCTTCGATTTCATCAAGGACGAGACCGACGACGACAAGATCAAGGCCAAGCTCTGCTCCAAATTGTCAAAGACTTCTACTCTTCTCCAATCTTTATCCTTTCTCACTTGCACATCTTCCACTGTGCTATAAGAACCTTGAGGATGTGAAAGATATCTTATGTGTCCTCGTGACCCTGAGTACCAGTGACTTAATACGTACTCTAGCATCCTTGAAGAAAAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.61

Weight (kDa)

9.88

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AciI CCGC 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 2 cut(s) 268, 286
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 2 cut(s) 79, 131
AspS9I GGNCC 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 76
BauI CACGAG 1 cut(s) 254
BceAI ACGGC 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 290
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 53
BseGI GGATG 2 cut(s) 235, 293
BseJI GATNNNNATC 1 cut(s) 53
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 270
BshFI GGCC 2 cut(s) 81, 133
BsiHKCI CYCGRG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 103
BsnI GGCC 2 cut(s) 81, 133
Bso31I GGTCTC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 76
Bsp143I GATC 2 cut(s) 54, 125
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 81, 133
BspCNI CTCAG 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 270
BssMI GATC 2 cut(s) 54, 125
BssNI GRCGYC 1 cut(s) 35
BssSI CACGAG 1 cut(s) 254
Bst2BI CACGAG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 16, 210
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 35
BstBAI YACGTR 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 235, 293
BstKTI GATC 2 cut(s) 57, 128
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 2 cut(s) 54, 125
BstSNI TACGTA 1 cut(s) 284
BsuRI GGCC 2 cut(s) 81, 133
BtsCI GGATG 2 cut(s) 235, 293
BtsIMutI CAGTG 2 cut(s) 206, 277
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 267, 285
CviJI RGCY 3 cut(s) 81, 133, 138
CviKI_1 RGCY 3 cut(s) 81, 133, 138
CviQI GTAC 2 cut(s) 267, 285
DdeI CTNAG 1 cut(s) 263
DpnI GATC 2 cut(s) 56, 127
DpnII GATC 2 cut(s) 54, 125
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco105I TACGTA 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 76
EcoRV GATATC 1 cut(s) 241
FaiI YATR 3 cut(s) 69, 216, 247
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 242, 280
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 290
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 2 cut(s) 81, 133
HgaI GACGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 35
HinfI GANTC 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 39
Hpy99I CGWCG 4 cut(s) 13, 16, 118, 121
HpyCH4III ACNGT 2 cut(s) 16, 210
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 263
HpySE526I ACGT 1 cut(s) 283
Hsp92I GRCGYC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 54, 125
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 2 cut(s) 275, 283
LweI GCATC 1 cut(s) 302
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 256, 272
MalI GATC 2 cut(s) 56, 127
MboI GATC 2 cut(s) 54, 125
MboII GAAGA 5 cut(s) 64, 81, 160, 194, 313
MluCI AATT 1 cut(s) 148
MnlI CCTC 2 cut(s) 220, 263
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 44
NdeII GATC 2 cut(s) 54, 125
NmuCI GTSAC 2 cut(s) 256, 272
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 113
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 6
Ppu21I YACGTR 1 cut(s) 284
PsiI TTATAA 1 cut(s) 69
PspPI GGNCC 1 cut(s) 79
RsaI GTAC 2 cut(s) 268, 286
RsaNI GTAC 2 cut(s) 267, 285
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 54, 125
Sau96I GGNCC 1 cut(s) 79
SetI ASST 3 cut(s) 140, 225, 286
SfaNI GCATC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SnaBI TACGTA 1 cut(s) 284
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 16, 210
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 92
TaqII GACCGA 1 cut(s) 127
TasI AATT 1 cut(s) 148
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 2 cut(s) 213, 277
TseFI GTSAC 2 cut(s) 256, 272
Tsp45I GTSAC 2 cut(s) 256, 272
TspDTI ATGAA 2 cut(s) 65, 87
TspRI CASTG 2 cut(s) 213, 277
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.