Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Forward (+)

27315592 .. 27324436

Gene Structure 8845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG259000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACGTCCTCGACGATGATGATGATCGACGAGATTTATGAGTTCTCAGCCCCGCGCTTCTTCGATTTCATCAAGGACGAGACTGACGACGACAAGATCAAGGCTGAGCTTTGGTTCGATTCCCTTCCCTGTGGATTAGAGAAGCTTGGTGGAGTAGAACAAGGTGAATTTCATCCACCCACGTCGCGAATGACCAATTATGTTGTGTTTAAATTCGGAGAGCTTACTAGGTCTTACAATGATTCCTCAAATTCCTTTGGAATTAATTCCATTAAGAGAAAAATCATTTGTAACAACTCTGATGGTGCCAAAGTCAAATTGCAAGGATTCTGCACTTCTACTTTCATCTTCATCTTCGGCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

121

Amino Acids

13.74

Weight (kDa)

4.93

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	2 cut(s)	305, 359
AccII	CGCG	2 cut(s)	55, 187
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	3 cut(s)	167, 212, 250
AcyI	GRCGYC	2 cut(s)	5, 360
AjiI	CACGTC	1 cut(s)	183
AluBI	AGCT	3 cut(s)	109, 145, 223
AluI	AGCT	3 cut(s)	109, 145, 223
Alw26I	GTCTC	1 cut(s)	74
ApoI	RAATTY	3 cut(s)	167, 212, 250
AseI	ATTAAT	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	2 cut(s)	57, 362
AsuHPI	GGTGA	1 cut(s)	176
BanI	GGYRCC	2 cut(s)	305, 359
BccI	CCATC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	363
BlpI	GCTNAGC	1 cut(s)	105
BmgBI	CACGTC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	307, 361
Bpu1102I	GCTNAGC	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	23
BsaHI	GRCGYC	2 cut(s)	5, 360
Bse8I	GATNNNNATC	1 cut(s)	23
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	23
BseMII	CTCAG	2 cut(s)	60, 96
BsgI	GTGCAG	1 cut(s)	316
Bsh1236I	CGCG	2 cut(s)	55, 187
BshNI	GGYRCC	2 cut(s)	305, 359
BsmAI	GTCTC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	24, 96
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp68I	TCGCGA	1 cut(s)	187
BspACI	CCGC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	59, 97
BspFNI	CGCG	2 cut(s)	55, 187
BspLI	GGNNCC	2 cut(s)	307, 361
BspT107I	GGYRCC	2 cut(s)	305, 359
BssMI	GATC	2 cut(s)	24, 96
BssNI	GRCGYC	2 cut(s)	5, 360
BstACI	GRCGYC	2 cut(s)	5, 360
BstDEI	CTNAG	2 cut(s)	46, 105
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	2 cut(s)	55, 187
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	57, 362
BstKTI	GATC	2 cut(s)	27, 99
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	24, 96
BstUI	CGCG	2 cut(s)	55, 187
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	172
BtuMI	TCGCGA	1 cut(s)	187
CfoI	GCGC	2 cut(s)	57, 362
CviJI	RGCY	5 cut(s)	50, 104, 109, 145, 223
CviKI_1	RGCY	5 cut(s)	50, 104, 109, 145, 223
DdeI	CTNAG	2 cut(s)	46, 105
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	2 cut(s)	26, 98
DpnII	GATC	2 cut(s)	24, 96
DraI	TTTAAA	1 cut(s)	211
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
FaiI	YATR	2 cut(s)	39, 201
FauI	CCCGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	159
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	2 cut(s)	56, 361
HaeII	RGCGCY	1 cut(s)	363
HhaI	GCGC	2 cut(s)	57, 362
Hin1I	GRCGYC	2 cut(s)	5, 360
Hin6I	GCGC	2 cut(s)	55, 360
HinP1I	GCGC	2 cut(s)	55, 360
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	3 cut(s)	119, 242, 327
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	218, 301
Hpy188III	TCNNGA	1 cut(s)	186
Hpy99I	CGWCG	4 cut(s)	16, 32, 92, 187
HpyAV	CCTTC	1 cut(s)	134
HpyCH4IV	ACGT	2 cut(s)	5, 182
HpyCH4V	TGCA	2 cut(s)	322, 333
HpyF3I	CTNAG	2 cut(s)	46, 105
HpySE526I	ACGT	2 cut(s)	5, 182
Hsp92I	GRCGYC	2 cut(s)	5, 360
HspAI	GCGC	2 cut(s)	55, 360
KasI	GGCGCC	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	24, 96
LpnPI	CCDG	1 cut(s)	142
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	2 cut(s)	5, 182
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	2 cut(s)	26, 98
MboI	GATC	2 cut(s)	24, 96
MboII	GAAGA	3 cut(s)	52, 340, 346
MluCI	AATT	7 cut(s)	167, 196, 212, 250, 261, 265, 317
Mly113I	GGCGCC	1 cut(s)	360
MnlI	CCTC	2 cut(s)	19, 256
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	3 cut(s)	210, 264, 273
MvnI	CGCG	2 cut(s)	55, 187
NarI	GGCGCC	1 cut(s)	360
NdeII	GATC	2 cut(s)	24, 96
NlaIV	GGNNCC	2 cut(s)	307, 361
NruI	TCGCGA	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 84
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	119, 242, 327
PluTI	GGCGCC	1 cut(s)	363
PshBI	ATTAAT	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	307, 361
RruI	TCGCGA	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	210, 264, 273
Sau3AI	GATC	2 cut(s)	24, 96
SetI	ASST	7 cut(s)	8, 111, 147, 166, 185, 225, 233
SfoI	GGCGCC	1 cut(s)	361
Sse9I	AATT	7 cut(s)	167, 196, 212, 250, 261, 265, 317
SsiI	CCGC	1 cut(s)	53
SspDI	GGCGCC	1 cut(s)	359
SspMI	CTAG	1 cut(s)	228
TaiI	ACGT	2 cut(s)	8, 185
TaqI	TCGA	4 cut(s)	11, 27, 63, 117
TasI	AATT	7 cut(s)	167, 196, 212, 250, 261, 265, 317
TfiI	GAWTC	3 cut(s)	119, 242, 327
Tru1I	TTAA	3 cut(s)	210, 264, 273
Tru9I	TTAA	3 cut(s)	210, 264, 273
TspDTI	ATGAA	4 cut(s)	58, 161, 334, 340
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	3 cut(s)	167, 212, 250
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.