Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003457

Physical Location & Seq

Genomic Coordinates Reverse (-)

63845226 .. 63852378

Gene Structure 7153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG439900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAGCGGGTTGAGCGGGGATTTGTCAAACAATAGCTTAACTGGTTCAATACCGGAGTTCCTGTCTAAATTGCCAAACCTGAAAGTTCTCAGTGGCAATATCCATGGGACTGAAAAGAGGAGGGAAAACGCATGGAACACAGTGTTATGTGATTCTTGGAAATACCCTTTGAAAGAACCGTTTGTGGAATTGTTGAAAGGGAGCTTGAATACTTTTCCCAATGCATTCACCTATCCTGATAGAACACTTGAATACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031967 GO:0031974 GO:0031975 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

86

Amino Acids

9.71

Weight (kDa)

6.55

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003457)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30421
malus_domestica	MD05G1077600.v1.1 MD05G1078300.v1.1 MD05G1078500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0496491 RchiOBHm_Chr5g0052551 RchiOBHm_Chr6g0274301
rosa_laevigata	RLG00000024686
rosa_multiflora	Rmu_co8446175.1_g000001 Rmu_sc0003641.1_g000017 Rmu_sc0004230.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032360 Rroxscaffold_1G00038920 Rroxscaffold_4G00320760 Rroxscaffold_7G00201650
rosa_rugosa	Rorug05G0348000 Rorug07G0144800 Rorug07G0144900
rosa_samantha	Rh1AG009800 Rh1AG099800 Rh1AG100700 Rh1AG144900 Rh1CG204500 Rh1DG101900 Rh2AG517000 Rh2BG259000 Rh2DG439900 Rh3CG357900 Rh4CG191000 Rh4CG244300 Rh6AG274200 Rh6CG030900 Rh6CG098900 Rh6CG276500 Rh7AG405200 Rh7CG299500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	6, 15
AciI	CCGC	2 cut(s)	6, 15
AgsI	TTSAA	5 cut(s)	48, 172, 196, 208, 251
AluBI	AGCT	2 cut(s)	36, 204
AluI	AGCT	2 cut(s)	36, 204
AsuHPI	GGTGA	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	224
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	2 cut(s)	6, 15
BspCNI	CTCAG	1 cut(s)	102
BsrBI	CCGCTC	2 cut(s)	6, 15
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	142, 180
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	97, 147
CviAII	CATG	2 cut(s)	104, 132
CviJI	RGCY	2 cut(s)	36, 204
CviKI_1	RGCY	2 cut(s)	36, 204
DdeI	CTNAG	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	107, 135
FaiI	YATR	3 cut(s)	105, 133, 148
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	2 cut(s)	103, 131
FauI	CCCGC	1 cut(s)	8
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	2 cut(s)	107, 135
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	142, 180
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	107, 135
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	5 cut(s)	27, 66, 74, 92, 249
MbiI	CCGCTC	2 cut(s)	6, 15
MluCI	AATT	2 cut(s)	68, 188
MnlI	CCTC	2 cut(s)	111, 114
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	1 cut(s)	38
MspI	CCGG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	103
NlaIII	CATG	2 cut(s)	107, 135
NsiI	ATGCAT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	38
SetI	ASST	4 cut(s)	38, 81, 206, 233
Sse9I	AATT	2 cut(s)	68, 188
SsiI	CCGC	2 cut(s)	6, 15
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	142, 180
TasI	AATT	2 cut(s)	68, 188
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	2 cut(s)	97, 147
TspRI	CASTG	2 cut(s)	97, 147
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.