Rh7DG283500

Belongs to the alternative oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006091
Physical Location & Seq
Reverse (-)
30784221 .. 30787007
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG283500.1

Sequence Viewer

Length: 1191 bp
ATGATGACGATGACTGGCACGCAAGCGTGCAGGCACATGGCGAAGTCGGCGACGCACGTAGCAAGTGCGCGCCTCTTCTCCACGGCAGCCAGAGCTGCCACCACTAATGCGCCCGCGGCCAAACAATTGTCCTCCATAATCATTCCTCTAAAGGATGCGGCCGCGGGTGCATGGTGGAACAACGGCAGCATCATTTACCCCGTTCAGAGGGTACGCAGTGGTAGCACTCTGGCTCTCGGCCGTCAGGAGAAGCAGCAGGAGGAGGCTGATCATAGCAACTCGTCCGTTTCGGTTGCCGGACACGGTGGTGGTAATAAGGACGATGAGGAGAAGGCCATCACCAGCTACTGGGGGGTGGGACCGAACAAGATTACTAAGGAAGACGGTACTGAATGGAAATGGAATTGCTTCAGACCATGGGAGACGTACAAGGCCGACACCTCGATAGATCTCCAGAAGCATCATGTGCCTACAACGTTGCTGGACAAAATGGCCTACTGGACTGTCAAGTCTCTCCGATGGCCTACGGACCTATTCTTCCAGGTATTGTTAACTATTAATTTGCTTGGTCATTTTTATGATTTGTCACTTTTTGGTAGTTACTTATTTTTTTTACCTATATGCTACATCCTTGTTATGCAGAGGCGATATGGGTGCAGGGCAATGATGCTGGAGACAGTGGCAGCAGTGCCTGGAATGGTAGGAGGGATGCTGCTGCACTGCAAATCGCTTAGGCGATTCGAGCACAGTGGCGGCTGGATCAAAGCTCTTCTAGAAGAAGCCGAGAACGAGCGTATGCACCTCATGACCTTCATGGAAGTCGCCAAGCCCCGGTGGTACGAGCGTGCACTTGTATTTGCTGTTCAAGGTGTTTTCTTCAATGCGTACTTCTTGGGATATATGATTTCACCCAAGTTTGCTCATAGAATGGTTGGATATCTTGAGGAGGAAGCAATTCACTCATATACCGAGTTCCTCAAGGAATTAGACAAGGGTAACATTGAGAATGTTCCAGCTCCAGCTATTGCTATTGATTATTGGCAGCTACCTTCCAATTCCACCTTGAGAGATGTTGTTACAGTTGTTAGGGCAGACGAGGCTCACCACCGAGATGTCAATCACTTCGCTTCGGACATACATTATAATGGACGTGAACTGAAGGAATCTCCAGCTCCAATTGGTTACCATTGA

Protein Analysis

396

Amino Acids

44.79

Weight (kDa)

7.29

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 152 - 377 2.6e-83 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1143
AasI GACNNNNNNGTC 1 cut(s) 508
AccB7I CCANNNNNTGG 1 cut(s) 348
AccII CGCG 3 cut(s) 70, 116, 164
AciI CCGC 6 cut(s) 114, 116, 158, 162, 164, 753
AclI AACGTT 1 cut(s) 476
AclWI GGATC 1 cut(s) 767
AcoI YGGCCR 3 cut(s) 117, 159, 238
AcuI CTGAAG 2 cut(s) 394, 1178
AfaI GTAC 5 cut(s) 213, 388, 428, 839, 887
AfiI CCNNNNNNNGG 3 cut(s) 207, 348, 831
AgsI TTSAA 2 cut(s) 866, 880
AjiI CACGTC 1 cut(s) 1151
AjnI CCWGG 2 cut(s) 540, 691
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 7 cut(s) 95, 345, 767, 1016, 1022, 1045, 1172
AluI AGCT 7 cut(s) 95, 345, 767, 1016, 1022, 1045, 1172
Alw21I GWGCWC 2 cut(s) 747, 850
Alw26I GTCTC 3 cut(s) 416, 516, 668
Alw44I GTGCAC 1 cut(s) 846
AlwI GGATC 1 cut(s) 767
AlwNI CAGNNNCTG 2 cut(s) 348, 692
AoxI GGCC 7 cut(s) 117, 159, 238, 333, 432, 492, 521
ApaLI GTGCAC 1 cut(s) 846
ApeKI GCWGC 8 cut(s) 86, 95, 186, 253, 683, 712, 715, 1042
AseI ATTAAT 1 cut(s) 558
Asp700I GAANNNNTTC 2 cut(s) 407, 954
AspLEI GCGC 3 cut(s) 70, 72, 112
AspS9I GGNCC 2 cut(s) 359, 529
AsuC2I CCSGG 1 cut(s) 832
AsuHPI GGTGA 3 cut(s) 331, 900, 1094
AvaII GGWCC 2 cut(s) 359, 529
BaeGI GKGCMC 1 cut(s) 850
BaeI ACNNNNGTAYC 2 cut(s) 829, 862
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 747, 850
BbvI GCAGC 8 cut(s) 82, 98, 198, 265, 695, 699, 702, 1054
BccI CCATC 2 cut(s) 344, 513
BceAI ACGGC 3 cut(s) 99, 199, 225
BcgI CGANNNNNNTGC 2 cut(s) 636, 670
BciT130I CCWGG 2 cut(s) 542, 693
BclI TGATCA 1 cut(s) 268
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 416, 516, 668
BfaI CTAG 1 cut(s) 773
BglII AGATCT 1 cut(s) 448
Bme1390I CCNGG 3 cut(s) 542, 693, 832
Bme18I GGWCC 2 cut(s) 359, 529
BmgBI CACGTC 1 cut(s) 1151
BmgT120I GGNCC 2 cut(s) 359, 529
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 3 cut(s) 542, 693, 832
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 5 cut(s) 145, 198, 469, 657, 699
BmuI ACTGGG 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 4 cut(s) 437, 692, 1002, 1152
Bpu10I CCTNAGC 1 cut(s) 731
BpuEI CTTGAG 3 cut(s) 962, 962, 1084
BpuMI CCSGG 1 cut(s) 832
BsaAI YACGTR 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 1116
BsaJI CCNNGG 5 cut(s) 81, 114, 162, 416, 830
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 348, 831
Bse1I ACTGG 3 cut(s) 19, 353, 503
Bse3DI GCAATG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 1116
BseBI CCWGG 2 cut(s) 542, 693
BseDI CCNNGG 5 cut(s) 81, 114, 162, 416, 830
BseGI GGATG 3 cut(s) 160, 627, 714
BseJI GATNNNNATC 1 cut(s) 1116
BseLI CCNNNNNNNGG 3 cut(s) 207, 348, 831
BseMI GCAATG 1 cut(s) 669
BseNI ACTGG 3 cut(s) 19, 353, 503
BsePI GCGCGC 1 cut(s) 68
BseRI GAGGAG 3 cut(s) 275, 341, 959
BseSI GKGCMC 1 cut(s) 850
BseX3I CGGCCG 2 cut(s) 159, 238
BseXI GCAGC 8 cut(s) 82, 98, 198, 265, 695, 699, 702, 1054
BsgI GTGCAG 3 cut(s) 49, 676, 701
Bsh1236I CGCG 3 cut(s) 70, 116, 164
Bsh1285I CGRYCG 2 cut(s) 162, 241
BshFI GGCC 7 cut(s) 119, 161, 240, 335, 434, 494, 523
BsiEI CGRYCG 2 cut(s) 162, 241
BsiHKAI GWGCWC 2 cut(s) 747, 850
BsiSI CCGG 2 cut(s) 297, 832
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 3 cut(s) 207, 348, 831
BsmAI GTCTC 3 cut(s) 416, 516, 668
BsmBI CGTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 7 cut(s) 119, 161, 240, 335, 434, 494, 523
Bsp1286I GDGCHC 2 cut(s) 747, 850
Bsp143I GATC 3 cut(s) 268, 448, 759
Bsp19I CCATGG 1 cut(s) 416
BspACI CCGC 6 cut(s) 114, 116, 158, 162, 164, 753
BspANI GGCC 7 cut(s) 119, 161, 240, 335, 434, 494, 523
BspFNI CGCG 3 cut(s) 70, 116, 164
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 767
BspQI GCTCTTC 1 cut(s) 774
BsrDI GCAATG 1 cut(s) 669
BsrI ACTGG 3 cut(s) 19, 353, 503
BssECI CCNNGG 5 cut(s) 81, 114, 162, 416, 830
BssHII GCGCGC 1 cut(s) 68
BssMI GATC 3 cut(s) 268, 448, 759
BssT1I CCWWGG 1 cut(s) 416
Bst2UI CCWGG 2 cut(s) 542, 693
Bst4CI ACNGT 6 cut(s) 305, 386, 505, 679, 749, 1081
Bst6I CTCTTC 2 cut(s) 80, 774
BstAPI GCANNNNNTGC 1 cut(s) 466
BstBAI YACGTR 1 cut(s) 58
BstC8I GCNNGC 7 cut(s) 20, 24, 28, 32, 70, 114, 846
BstDEI CTNAG 2 cut(s) 375, 731
BstDSI CCRYGG 4 cut(s) 81, 114, 162, 416
BstEII GGTNACC 1 cut(s) 1181
BstF5I GGATG 3 cut(s) 160, 627, 714
BstFNI CGCG 3 cut(s) 70, 116, 164
BstHHI GCGC 3 cut(s) 70, 72, 112
BstKTI GATC 3 cut(s) 271, 451, 762
BstMAI GTCTC 3 cut(s) 416, 516, 668
BstMBI GATC 3 cut(s) 268, 448, 759
BstMCI CGRYCG 2 cut(s) 162, 241
BstMWI GCNNNNNNNGC 9 cut(s) 47, 92, 95, 116, 167, 222, 466, 742, 1097
BstNI CCWGG 2 cut(s) 542, 693
BstPI GGTNACC 1 cut(s) 1181
BstSCI CCNGG 3 cut(s) 540, 691, 830
BstSLI GKGCMC 1 cut(s) 850
BstUI CGCG 3 cut(s) 70, 116, 164
BstV1I GCAGC 8 cut(s) 82, 98, 198, 265, 695, 699, 702, 1054
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BstZI CGGCCG 2 cut(s) 159, 238
BsuRI GGCC 7 cut(s) 119, 161, 240, 335, 434, 494, 523
BtgI CCRYGG 4 cut(s) 81, 114, 162, 416
BtrI CACGTC 1 cut(s) 1151
BtsCI GGATG 3 cut(s) 160, 627, 714
BtsI GCAGTG 3 cut(s) 223, 693, 718
BtsIMutI CAGTG 5 cut(s) 223, 684, 693, 718, 754
Cac8I GCNNGC 7 cut(s) 20, 24, 28, 32, 70, 114, 846
CaiI CAGNNNCTG 2 cut(s) 348, 692
CciI TCATGA 1 cut(s) 804
CciNI GCGGCCGC 1 cut(s) 159
CfoI GCGC 3 cut(s) 70, 72, 112
Cfr13I GGNCC 2 cut(s) 359, 529
Cfr42I CCGCGG 2 cut(s) 117, 165
CseI GACGC 1 cut(s) 61
Csp6I GTAC 5 cut(s) 212, 387, 427, 838, 886
CviAII CATG 6 cut(s) 37, 171, 417, 464, 805, 814
CviQI GTAC 5 cut(s) 212, 387, 427, 838, 886
DdeI CTNAG 2 cut(s) 375, 731
DpnI GATC 3 cut(s) 270, 450, 761
DpnII GATC 3 cut(s) 268, 448, 759
DrdI GACNNNNNNGTC 1 cut(s) 508
DseDI GACNNNNNNGTC 1 cut(s) 508
EaeI YGGCCR 3 cut(s) 117, 159, 238
EagI CGGCCG 2 cut(s) 159, 238
Eam1104I CTCTTC 2 cut(s) 80, 774
EarI CTCTTC 2 cut(s) 80, 774
EclXI CGGCCG 2 cut(s) 159, 238
Eco130I CCWWGG 1 cut(s) 416
Eco32I GATATC 1 cut(s) 938
Eco47I GGWCC 2 cut(s) 359, 529
Eco52I CGGCCG 2 cut(s) 159, 238
Eco57I CTGAAG 2 cut(s) 394, 1178
Eco91I GGTNACC 1 cut(s) 1181
EcoO65I GGTNACC 1 cut(s) 1181
EcoRII CCWGG 2 cut(s) 540, 691
EcoRV GATATC 1 cut(s) 938
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 6 cut(s) 40, 174, 420, 467, 808, 817
FaqI GGGAC 1 cut(s) 372
FatI CATG 6 cut(s) 36, 170, 416, 463, 804, 813
FauI CCCGC 2 cut(s) 121, 157
FbaI TGATCA 1 cut(s) 268
FokI GGATG 3 cut(s) 167, 614, 721
FspBI CTAG 1 cut(s) 773
GlaI GCGC 3 cut(s) 69, 71, 111
GsuI CTGGAG 4 cut(s) 437, 692, 1002, 1152
HaeIII GGCC 7 cut(s) 119, 161, 240, 335, 434, 494, 523
HapII CCGG 2 cut(s) 297, 832
HgaI GACGC 1 cut(s) 61
HhaI GCGC 3 cut(s) 70, 72, 112
Hin1II CATG 6 cut(s) 40, 174, 420, 467, 808, 817
Hin6I GCGC 3 cut(s) 68, 70, 110
HinP1I GCGC 3 cut(s) 68, 70, 110
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 2 cut(s) 738, 1163
HpaI GTTAAC 1 cut(s) 552
HpaII CCGG 2 cut(s) 297, 832
HphI GGTGA 3 cut(s) 331, 900, 1094
Hpy166II GTNNAC 3 cut(s) 552, 848, 1154
Hpy188I TCNGA 4 cut(s) 207, 413, 518, 1132
Hpy188III TCNNGA 5 cut(s) 245, 454, 773, 805, 941
Hpy8I GTNNAC 3 cut(s) 552, 848, 1154
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 4 cut(s) 325, 820, 1059, 1153
HpyCH4III ACNGT 6 cut(s) 305, 386, 505, 679, 749, 1081
HpyCH4IV ACGT 4 cut(s) 57, 425, 476, 1150
HpyCH4V TGCA 8 cut(s) 30, 170, 640, 657, 718, 723, 799, 848
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 92, 95, 116, 167, 222, 466, 742, 1097
HpyF3I CTNAG 2 cut(s) 375, 731
HpySE526I ACGT 4 cut(s) 57, 425, 476, 1150
Hsp92II CATG 6 cut(s) 40, 174, 420, 467, 808, 817
HspAI GCGC 3 cut(s) 68, 70, 110
Ksp22I TGATCA 1 cut(s) 268
KspAI GTTAAC 1 cut(s) 552
KspI CCGCGG 2 cut(s) 117, 165
Kzo9I GATC 3 cut(s) 268, 448, 759
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 2 cut(s) 1021, 1177
Lsp1109I GCAGC 8 cut(s) 82, 98, 198, 265, 695, 699, 702, 1054
LweI GCATC 5 cut(s) 145, 198, 469, 657, 699
MaeI CTAG 1 cut(s) 773
MaeII ACGT 4 cut(s) 57, 425, 476, 1150
MaeIII GTNAC 5 cut(s) 585, 599, 995, 1075, 1181
MalI GATC 3 cut(s) 270, 450, 761
MboI GATC 3 cut(s) 268, 448, 759
MboII GAAGA 6 cut(s) 67, 392, 529, 761, 788, 868
MfeI CAATTG 2 cut(s) 125, 1176
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 747, 850
MluCI AATT 7 cut(s) 125, 403, 559, 954, 983, 1054, 1176
MmeI TCCRAC 1 cut(s) 913
MroXI GAANNNNTTC 2 cut(s) 407, 954
MseI TTAA 2 cut(s) 551, 558
MslI CAYNNNNRTG 4 cut(s) 306, 576, 1110, 1143
MspA1I CMGCKG 2 cut(s) 116, 164
MspI CCGG 2 cut(s) 297, 832
MspR9I CCNGG 3 cut(s) 542, 693, 832
MunI CAATTG 2 cut(s) 125, 1176
MvaI CCWGG 2 cut(s) 542, 693
MvnI CGCG 3 cut(s) 70, 116, 164
MwoI GCNNNNNNNGC 9 cut(s) 47, 92, 95, 116, 167, 222, 466, 742, 1097
NciI CCSGG 1 cut(s) 832
NcoI CCATGG 1 cut(s) 416
NdeII GATC 3 cut(s) 268, 448, 759
NlaIII CATG 6 cut(s) 40, 174, 420, 467, 808, 817
NlaIV GGNNCC 1 cut(s) 360
NmeAIII GCCGAG 2 cut(s) 216, 808
NmuCI GTSAC 1 cut(s) 585
NotI GCGGCCGC 1 cut(s) 159
OliI CACNNNNGTG 1 cut(s) 306
PagI TCATGA 1 cut(s) 804
PauI GCGCGC 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 774
PdmI GAANNNNTTC 2 cut(s) 407, 954
PfeI GAWTC 2 cut(s) 738, 1163
PflMI CCANNNNNTGG 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 558
PsiI TTATAA 1 cut(s) 1143
Psp1406I AACGTT 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 540, 691
PspEI GGTNACC 1 cut(s) 1181
PspGI CCWGG 2 cut(s) 540, 691
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 2 cut(s) 359, 529
PsrI GAACNNNNNNTAC 2 cut(s) 846, 878
PstNI CAGNNNCTG 2 cut(s) 348, 692
PsuI RGATCY 1 cut(s) 448
PteI GCGCGC 1 cut(s) 68
RsaI GTAC 5 cut(s) 213, 388, 428, 839, 887
RsaNI GTAC 5 cut(s) 212, 387, 427, 838, 886
RseI CAYNNNNRTG 4 cut(s) 306, 576, 1110, 1143
SacII CCGCGG 2 cut(s) 117, 165
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 2 cut(s) 551, 558
Sau3AI GATC 3 cut(s) 268, 448, 759
Sau96I GGNCC 2 cut(s) 359, 529
ScrFI CCNGG 3 cut(s) 542, 693, 832
SduI GDGCHC 2 cut(s) 747, 850
SfaNI GCATC 5 cut(s) 145, 198, 469, 657, 699
Sfr303I CCGCGG 2 cut(s) 117, 165
SgrBI CCGCGG 2 cut(s) 117, 165
SinI GGWCC 2 cut(s) 359, 529
SmiMI CAYNNNNRTG 4 cut(s) 306, 576, 1110, 1143
SmlI CTYRAG 3 cut(s) 941, 977, 1063
SmoI CTYRAG 3 cut(s) 941, 977, 1063
Sse9I AATT 7 cut(s) 125, 403, 559, 954, 983, 1054, 1176
SsiI CCGC 6 cut(s) 114, 116, 158, 162, 164, 753
SspMI CTAG 1 cut(s) 773
StyD4I CCNGG 3 cut(s) 540, 691, 830
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 6 cut(s) 305, 386, 505, 679, 749, 1081
TaiI ACGT 4 cut(s) 60, 428, 479, 1153
TaqI TCGA 2 cut(s) 443, 741
TaqII GACCGA 1 cut(s) 376
TasI AATT 7 cut(s) 125, 403, 559, 954, 983, 1054, 1176
TauI GCSGC 4 cut(s) 119, 161, 164, 756
TfiI GAWTC 2 cut(s) 738, 1163
Tru1I TTAA 2 cut(s) 551, 558
Tru9I TTAA 2 cut(s) 551, 558
TscAI CASTG 5 cut(s) 223, 684, 693, 725, 754
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 8 cut(s) 86, 95, 186, 253, 683, 712, 715, 1042
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 1 cut(s) 802
TspGWI ACGGA 2 cut(s) 274, 542
TspRI CASTG 5 cut(s) 223, 684, 693, 725, 754
Van91I CCANNNNNTGG 1 cut(s) 348
VneI GTGCAC 1 cut(s) 846
VpaK11BI GGWCC 2 cut(s) 359, 529
VspI ATTAAT 1 cut(s) 558
XbaI TCTAGA 1 cut(s) 772
XmnI GAANNNNTTC 2 cut(s) 407, 954
XspI CTAG 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.