Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006091

Physical Location & Seq

Genomic Coordinates Reverse (-)

31030654 .. 31032369

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19145

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATGACGATGACTGGCACGCAAGCGTGCAGGCACATGGCGAAGTCGGCGACGCACGTAGCAAGTGCGCGCCTCTTCTCCACGGCAGCCAGAGCTGCCACCACTAATGCGCCCGCGGCCAAACAATTGTCCTCCATAATCATTCCTCTAAAGGATGCGGCCGCGGGCGCATGGTGGAACAACGGCAGCATCATTTACCCCTTTCAGAGGGTACGCAGTGGTAGCACTCTGGCTCTCGGCCGTCAGGAGAAGCAGCAGGAGGAGGCTGATCATAGCAACTCCGCCGTTTCGGTTGCCGGACACGGTGGTGGTAATAAGGACAATGAGGAGAAGGCCATCACCAGCTACTGGGGGGTGGGACCGAACAAGATTACCAAGGAAGACGGTACAGAATGGAAATGGAATTGCTTCAGACCATGGGAGACGTACAAGGCCGACACCTCGATAGATCTCCAGAAGCATCATGTGCCTACAACTTTGCTGGACAAAATGGCCTACTGGACTGTCAAGTCTCTCCGATGGCCTACGGACCTATTCTTCCAGAGGCGATATGGGTGCAGGGCAATGATGCTGGAGACAGTGGCAGCAGTGCCTGGAATGGTAGGAGGGATGCTGCTGCACTGCAAATCGCTTAGGCGATTCGAGCACAGTGGCGGCTGGATCAAAGCACTTCTAGAAGAAGCCGAGAACGAGCGTATGCACCTCATGACCTTCATGGAAGTCGCCAAGCCCCGAATGGTTGGATATCTTGAGGAGGAAGCAATTCACTCATATACCGAGTTCCTCAAGGAATTAGACAAAGGTAACATTGAGAATGTTCCAGCTCCAGCTATTGCTATTGATTATTGGCAGCTACCTTCCAATTCCACCTTGAGAGATGTTGTTACAGTTGTTAGGGCAGACGAGGCTCACCACCGAGATGTCAATCACTTCGCTTCGGACATACATTATAATGGACGTGAACTGAAGGAATCTCCAGCTCCAATTGGTTACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

332

Amino Acids

37.26

Weight (kDa)

7.27

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AOX	PF01786	152 - 246	2.5e-33	Alternative oxidase
AOX	PF01786	245 - 313	3.3e-27	Alternative oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32350 AT1G32350 AT3G22360 AT3G22370 AT3G27620 AT5G63625 AT5G64687 AT5G64687
fragaria_vesca	FvH4_5g24160
malus_domestica	MD00G1148200.v1.1
prunus_persica	Prupe.5G018700_v2.0.a1
pyrus_communis	pycom16g25550
rosa_chinensis	RchiOBHm_Chr7g0213861 RchiOBHm_Chr7g0213931
rosa_laevigata	RLG00000002775
rosa_multiflora	Rmu_co8428533.1_g000001 Rmu_sc0000328.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245650 Rroxscaffold_3G00245670
rosa_rugosa	Rorug07G0144800
rosa_samantha	Rh7AG277100 Rh7AG277800 Rh7BG271200 Rh7CG296100 Rh7CG296900 Rh7DG283500
rosa_wichuraiana	Rw7G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AasI	GACNNNNNNGTC	1 cut(s)	508
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccII	CGCG	3 cut(s)	70, 116, 164
AciI	CCGC	7 cut(s)	114, 116, 158, 162, 164, 282, 654
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	3 cut(s)	117, 159, 238
AcuI	CTGAAG	2 cut(s)	394, 986
AfaI	GTAC	3 cut(s)	213, 388, 428
AfiI	CCNNNNNNNGG	2 cut(s)	207, 348
AjiI	CACGTC	1 cut(s)	959
AjnI	CCWGG	1 cut(s)	592
AleI	CACNNNNGTG	1 cut(s)	306
AluBI	AGCT	6 cut(s)	95, 345, 824, 830, 853, 980
AluI	AGCT	6 cut(s)	95, 345, 824, 830, 853, 980
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	3 cut(s)	416, 516, 569
AlwI	GGATC	1 cut(s)	668
AlwNI	CAGNNNCTG	2 cut(s)	348, 593
AoxI	GGCC	7 cut(s)	117, 159, 238, 333, 432, 492, 521
ApeKI	GCWGC	8 cut(s)	86, 95, 186, 253, 584, 613, 616, 850
Asp700I	GAANNNNTTC	2 cut(s)	407, 762
AspLEI	GCGC	4 cut(s)	70, 72, 112, 170
AspS9I	GGNCC	2 cut(s)	359, 529
AsuHPI	GGTGA	2 cut(s)	331, 902
AvaII	GGWCC	2 cut(s)	359, 529
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	8 cut(s)	82, 98, 198, 265, 596, 600, 603, 862
BccI	CCATC	2 cut(s)	344, 513
BceAI	ACGGC	4 cut(s)	99, 199, 225, 269
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	594
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	3 cut(s)	416, 516, 569
BfaI	CTAG	1 cut(s)	674
BglII	AGATCT	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	2 cut(s)	359, 529
BmgBI	CACGTC	1 cut(s)	959
BmgT120I	GGNCC	2 cut(s)	359, 529
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	594
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	5 cut(s)	145, 198, 469, 558, 600
BmuI	ACTGGG	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	4 cut(s)	437, 593, 810, 960
Bpu10I	CCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	3 cut(s)	770, 770, 892
BsaAI	YACGTR	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	924
BsaJI	CCNNGG	5 cut(s)	81, 114, 162, 375, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 348
Bse1I	ACTGG	3 cut(s)	19, 353, 503
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	924
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	5 cut(s)	81, 114, 162, 375, 416
BseGI	GGATG	2 cut(s)	160, 615
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	2 cut(s)	207, 348
BseMI	GCAATG	1 cut(s)	570
BseNI	ACTGG	3 cut(s)	19, 353, 503
BsePI	GCGCGC	1 cut(s)	68
BseRI	GAGGAG	3 cut(s)	275, 341, 767
BseX3I	CGGCCG	2 cut(s)	159, 238
BseXI	GCAGC	8 cut(s)	82, 98, 198, 265, 596, 600, 603, 862
BsgI	GTGCAG	3 cut(s)	49, 577, 602
Bsh1236I	CGCG	3 cut(s)	70, 116, 164
Bsh1285I	CGRYCG	2 cut(s)	162, 241
BshFI	GGCC	7 cut(s)	119, 161, 240, 335, 434, 494, 523
BsiEI	CGRYCG	2 cut(s)	162, 241
BsiHKAI	GWGCWC	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	207, 348
BsmAI	GTCTC	3 cut(s)	416, 516, 569
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	7 cut(s)	119, 161, 240, 335, 434, 494, 523
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	3 cut(s)	268, 448, 660
Bsp19I	CCATGG	1 cut(s)	416
BspACI	CCGC	7 cut(s)	114, 116, 158, 162, 164, 282, 654
BspANI	GGCC	7 cut(s)	119, 161, 240, 335, 434, 494, 523
BspFNI	CGCG	3 cut(s)	70, 116, 164
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	3 cut(s)	19, 353, 503
BssECI	CCNNGG	5 cut(s)	81, 114, 162, 375, 416
BssHII	GCGCGC	1 cut(s)	68
BssMI	GATC	3 cut(s)	268, 448, 660
BssT1I	CCWWGG	2 cut(s)	375, 416
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	6 cut(s)	305, 386, 505, 580, 650, 889
Bst6I	CTCTTC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	58
BstC8I	GCNNGC	7 cut(s)	20, 24, 28, 32, 70, 114, 166
BstDEI	CTNAG	1 cut(s)	632
BstDSI	CCRYGG	4 cut(s)	81, 114, 162, 416
BstEII	GGTNACC	1 cut(s)	989
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	160, 615
BstFNI	CGCG	3 cut(s)	70, 116, 164
BstHHI	GCGC	4 cut(s)	70, 72, 112, 170
BstKTI	GATC	3 cut(s)	271, 451, 663
BstMAI	GTCTC	3 cut(s)	416, 516, 569
BstMBI	GATC	3 cut(s)	268, 448, 660
BstMCI	CGRYCG	2 cut(s)	162, 241
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 92, 95, 116, 167, 222, 466, 643, 905
BstNI	CCWGG	1 cut(s)	594
BstPI	GGTNACC	1 cut(s)	989
BstSCI	CCNGG	1 cut(s)	592
BstUI	CGCG	3 cut(s)	70, 116, 164
BstV1I	GCAGC	8 cut(s)	82, 98, 198, 265, 596, 600, 603, 862
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BstZI	CGGCCG	2 cut(s)	159, 238
BsuRI	GGCC	7 cut(s)	119, 161, 240, 335, 434, 494, 523
BtgI	CCRYGG	4 cut(s)	81, 114, 162, 416
BtrI	CACGTC	1 cut(s)	959
BtsCI	GGATG	2 cut(s)	160, 615
BtsI	GCAGTG	3 cut(s)	223, 594, 619
BtsIMutI	CAGTG	5 cut(s)	223, 585, 594, 619, 655
Cac8I	GCNNGC	7 cut(s)	20, 24, 28, 32, 70, 114, 166
CaiI	CAGNNNCTG	2 cut(s)	348, 593
CciI	TCATGA	1 cut(s)	705
CciNI	GCGGCCGC	1 cut(s)	159
CfoI	GCGC	4 cut(s)	70, 72, 112, 170
Cfr13I	GGNCC	2 cut(s)	359, 529
Cfr42I	CCGCGG	2 cut(s)	117, 165
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	212, 387, 427
CviAII	CATG	6 cut(s)	37, 171, 417, 464, 706, 715
CviQI	GTAC	3 cut(s)	212, 387, 427
DdeI	CTNAG	1 cut(s)	632
DpnI	GATC	3 cut(s)	270, 450, 662
DpnII	GATC	3 cut(s)	268, 448, 660
DrdI	GACNNNNNNGTC	1 cut(s)	508
DseDI	GACNNNNNNGTC	1 cut(s)	508
EaeI	YGGCCR	3 cut(s)	117, 159, 238
EagI	CGGCCG	2 cut(s)	159, 238
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	271
EclXI	CGGCCG	2 cut(s)	159, 238
Eco130I	CCWWGG	2 cut(s)	375, 416
Eco32I	GATATC	1 cut(s)	746
Eco47I	GGWCC	2 cut(s)	359, 529
Eco52I	CGGCCG	2 cut(s)	159, 238
Eco57I	CTGAAG	2 cut(s)	394, 986
Eco91I	GGTNACC	1 cut(s)	989
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	989
EcoRII	CCWGG	1 cut(s)	592
EcoRV	GATATC	1 cut(s)	746
EcoT14I	CCWWGG	2 cut(s)	375, 416
ErhI	CCWWGG	2 cut(s)	375, 416
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	6 cut(s)	40, 174, 420, 467, 709, 718
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	6 cut(s)	36, 170, 416, 463, 705, 714
FauI	CCCGC	2 cut(s)	121, 157
FbaI	TGATCA	1 cut(s)	268
FokI	GGATG	2 cut(s)	167, 622
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	4 cut(s)	69, 71, 111, 169
GsuI	CTGGAG	4 cut(s)	437, 593, 810, 960
HaeIII	GGCC	7 cut(s)	119, 161, 240, 335, 434, 494, 523
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	4 cut(s)	70, 72, 112, 170
Hin1II	CATG	6 cut(s)	40, 174, 420, 467, 709, 718
Hin6I	GCGC	4 cut(s)	68, 70, 110, 168
HinP1I	GCGC	4 cut(s)	68, 70, 110, 168
HinfI	GANTC	2 cut(s)	639, 971
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	331, 902
Hpy166II	GTNNAC	1 cut(s)	962
Hpy188I	TCNGA	4 cut(s)	207, 413, 518, 940
Hpy188III	TCNNGA	6 cut(s)	245, 454, 541, 674, 706, 749
Hpy8I	GTNNAC	1 cut(s)	962
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	4 cut(s)	325, 721, 867, 961
HpyCH4III	ACNGT	6 cut(s)	305, 386, 505, 580, 650, 889
HpyCH4IV	ACGT	3 cut(s)	57, 425, 958
HpyCH4V	TGCA	5 cut(s)	30, 558, 619, 624, 700
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 92, 95, 116, 167, 222, 466, 643, 905
HpyF3I	CTNAG	1 cut(s)	632
HpySE526I	ACGT	3 cut(s)	57, 425, 958
Hsp92II	CATG	6 cut(s)	40, 174, 420, 467, 709, 718
HspAI	GCGC	4 cut(s)	68, 70, 110, 168
Ksp22I	TGATCA	1 cut(s)	268
KspI	CCGCGG	2 cut(s)	117, 165
Kzo9I	GATC	3 cut(s)	268, 448, 660
LmnI	GCTCC	2 cut(s)	829, 985
Lsp1109I	GCAGC	8 cut(s)	82, 98, 198, 265, 596, 600, 603, 862
LweI	GCATC	5 cut(s)	145, 198, 469, 558, 600
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	3 cut(s)	57, 425, 958
MaeIII	GTNAC	3 cut(s)	803, 883, 989
MalI	GATC	3 cut(s)	270, 450, 662
MboI	GATC	3 cut(s)	268, 448, 660
MboII	GAAGA	4 cut(s)	67, 392, 529, 689
MfeI	CAATTG	2 cut(s)	125, 984
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	6 cut(s)	125, 403, 762, 791, 862, 984
MmeI	TCCRAC	1 cut(s)	721
MroXI	GAANNNNTTC	2 cut(s)	407, 762
MslI	CAYNNNNRTG	3 cut(s)	306, 918, 951
MspA1I	CMGCKG	2 cut(s)	116, 164
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	594
MunI	CAATTG	2 cut(s)	125, 984
MvaI	CCWGG	1 cut(s)	594
MvnI	CGCG	3 cut(s)	70, 116, 164
MwoI	GCNNNNNNNGC	9 cut(s)	47, 92, 95, 116, 167, 222, 466, 643, 905
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	3 cut(s)	268, 448, 660
NlaIII	CATG	6 cut(s)	40, 174, 420, 467, 709, 718
NlaIV	GGNNCC	1 cut(s)	360
NmeAIII	GCCGAG	2 cut(s)	216, 709
NotI	GCGGCCGC	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	306
PagI	TCATGA	1 cut(s)	705
PauI	GCGCGC	1 cut(s)	68
PdmI	GAANNNNTTC	2 cut(s)	407, 762
PfeI	GAWTC	2 cut(s)	639, 971
PflMI	CCANNNNNTGG	1 cut(s)	348
Ppu21I	YACGTR	1 cut(s)	58
PsiI	TTATAA	1 cut(s)	951
Psp6I	CCWGG	1 cut(s)	592
PspEI	GGTNACC	1 cut(s)	989
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	359, 529
PstNI	CAGNNNCTG	2 cut(s)	348, 593
PsuI	RGATCY	1 cut(s)	448
PteI	GCGCGC	1 cut(s)	68
RsaI	GTAC	3 cut(s)	213, 388, 428
RsaNI	GTAC	3 cut(s)	212, 387, 427
RseI	CAYNNNNRTG	3 cut(s)	306, 918, 951
SacII	CCGCGG	2 cut(s)	117, 165
Sau3AI	GATC	3 cut(s)	268, 448, 660
Sau96I	GGNCC	2 cut(s)	359, 529
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	5 cut(s)	145, 198, 469, 558, 600
Sfr303I	CCGCGG	2 cut(s)	117, 165
SgrBI	CCGCGG	2 cut(s)	117, 165
SinI	GGWCC	2 cut(s)	359, 529
SmiMI	CAYNNNNRTG	3 cut(s)	306, 918, 951
SmlI	CTYRAG	3 cut(s)	749, 785, 871
SmoI	CTYRAG	3 cut(s)	749, 785, 871
Sse9I	AATT	6 cut(s)	125, 403, 762, 791, 862, 984
SsiI	CCGC	7 cut(s)	114, 116, 158, 162, 164, 282, 654
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	2 cut(s)	375, 416
TaaI	ACNGT	6 cut(s)	305, 386, 505, 580, 650, 889
TaiI	ACGT	3 cut(s)	60, 428, 961
TaqI	TCGA	2 cut(s)	443, 642
TaqII	GACCGA	1 cut(s)	376
TasI	AATT	6 cut(s)	125, 403, 762, 791, 862, 984
TauI	GCSGC	4 cut(s)	119, 161, 164, 657
TfiI	GAWTC	2 cut(s)	639, 971
TscAI	CASTG	5 cut(s)	223, 585, 594, 626, 655
TseI	GCWGC	8 cut(s)	86, 95, 186, 253, 584, 613, 616, 850
TspDTI	ATGAA	1 cut(s)	703
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	5 cut(s)	223, 585, 594, 626, 655
Van91I	CCANNNNNTGG	1 cut(s)	348
VpaK11BI	GGWCC	2 cut(s)	359, 529
XagI	CCTNNNNNAGG	1 cut(s)	205
XbaI	TCTAGA	1 cut(s)	673
XcmI	CCANNNNNNNNNTGG	2 cut(s)	548, 733
XmnI	GAANNNNTTC	2 cut(s)	407, 762
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.