Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8428533.1

Orthogroup ID

OG0006091

Physical Location & Seq

Genomic Coordinates Forward (+)

61 .. 702

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8428533.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgatgctggagacagtggcagcagtgcctggaatggtaggagggatgctgctgcactgcaaatcgcttaggcgattcgagcacagtggcggctggatcaaagctcttctagaagaagccgagaacgagcgtatgcacctcatgaccttcatggaagtcgccaagccccagtggtacgagcgtgcacttgtatttgctgttcaaggtgttttcttcaatgcgtacttcttgggatatatgatttcacccaagtttgctcatagaatggttggatatcttgaggaggaagcaattcactcatataccgagttcctcaatgaattagacaaaggtaacattgagaatgttccagctccagctattgctattgattattggcagctaccttccaattccaccttgagagatgttgttacagttgttagggcagacgaggctcaccaccgagatgtcaatcacttcgcttcggacatacattataatggacgtgaactgaaggaatctccagctccaattggttaccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

175

Amino Acids

20.02

Weight (kDa)

5.64

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32350 AT1G32350 AT3G22360 AT3G22370 AT3G27620 AT5G63625 AT5G64687 AT5G64687
fragaria_vesca	FvH4_5g24160
malus_domestica	MD00G1148200.v1.1
prunus_persica	Prupe.5G018700_v2.0.a1
pyrus_communis	pycom16g25550
rosa_chinensis	RchiOBHm_Chr7g0213861 RchiOBHm_Chr7g0213931
rosa_laevigata	RLG00000002775
rosa_multiflora	Rmu_co8428533.1_g000001 Rmu_sc0000328.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245650 Rroxscaffold_3G00245670
rosa_rugosa	Rorug07G0144800
rosa_samantha	Rh7AG277100 Rh7AG277800 Rh7BG271200 Rh7CG296100 Rh7CG296900 Rh7DG283500
rosa_wichuraiana	Rw7G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	176, 224
AgsI	TTSAA	2 cut(s)	203, 217
AjiI	CACGTC	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	5 cut(s)	104, 353, 359, 382, 509
AluI	AGCT	5 cut(s)	104, 353, 359, 382, 509
Alw21I	GWGCWC	2 cut(s)	84, 187
Alw26I	GTCTC	1 cut(s)	5
Alw44I	GTGCAC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	183
ApeKI	GCWGC	4 cut(s)	20, 49, 52, 379
Asp700I	GAANNNNTTC	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	237, 431
BaeGI	GKGCMC	1 cut(s)	187
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
Bbv12I	GWGCWC	2 cut(s)	84, 187
BbvI	GCAGC	4 cut(s)	32, 36, 39, 391
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	5 cut(s)	21, 50, 53, 91, 380
BlsI	GCNGC	5 cut(s)	22, 51, 54, 92, 381
Bme1390I	CCNGG	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	488
BmrFI	CCNGG	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	163
BpmI	CTGGAG	3 cut(s)	29, 339, 489
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	299, 421
BsaBI	GATNNNNATC	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	51
BseJI	GATNNNNATC	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	4 cut(s)	32, 36, 39, 391
BsgI	GTGCAG	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	84, 187
BsmAI	GTCTC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	84, 187
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	141
BspPI	GGATC	1 cut(s)	104
BspQI	GCTCTTC	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	16, 86, 418
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	518
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 434
BstNI	CCWGG	1 cut(s)	30
BstPI	GGTNACC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	187
BstV1I	GCAGC	4 cut(s)	32, 36, 39, 391
BtrI	CACGTC	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	51
BtsI	GCAGTG	2 cut(s)	30, 55
BtsIMutI	CAGTG	5 cut(s)	21, 30, 55, 91, 176
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	175, 223
CviAII	CATG	2 cut(s)	142, 151
CviJI	RGCY	9 cut(s)	93, 104, 119, 166, 353, 359, 382, 437, 509
CviKI_1	RGCY	9 cut(s)	93, 104, 119, 166, 353, 359, 382, 437, 509
CviQI	GTAC	2 cut(s)	175, 223
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	518
EcoO65I	GGTNACC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	275
FaeI	CATG	2 cut(s)	145, 154
FatI	CATG	2 cut(s)	141, 150
Fnu4HI	GCNGC	5 cut(s)	21, 50, 53, 91, 380
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	5 cut(s)	21, 50, 53, 91, 380
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	5 cut(s)	21, 50, 53, 91, 380
GsuI	CTGGAG	3 cut(s)	29, 339, 489
Hin1II	CATG	2 cut(s)	145, 154
HinfI	GANTC	2 cut(s)	75, 500
HphI	GGTGA	2 cut(s)	237, 431
Hpy166II	GTNNAC	2 cut(s)	185, 491
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	3 cut(s)	110, 142, 278
Hpy8I	GTNNAC	2 cut(s)	185, 491
HpyAV	CCTTC	3 cut(s)	157, 396, 490
HpyCH4III	ACNGT	3 cut(s)	16, 86, 418
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	4 cut(s)	55, 60, 136, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 434
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	2 cut(s)	145, 154
Kzo9I	GATC	1 cut(s)	96
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	358, 514
LpnPI	CCDG	7 cut(s)	15, 42, 79, 182, 363, 369, 519
Lsp1109I	GCAGC	4 cut(s)	32, 36, 39, 391
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	3 cut(s)	332, 412, 518
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	3 cut(s)	98, 125, 205
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	84, 187
MluCI	AATT	4 cut(s)	291, 320, 391, 513
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	6 cut(s)	35, 149, 274, 277, 323, 427
MroXI	GAANNNNTTC	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	447, 480
MspR9I	CCNGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	79, 434
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	145, 154
NmeAIII	GCCGAG	1 cut(s)	145
PagI	TCATGA	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	75, 500
PkrI	GCNGC	5 cut(s)	22, 51, 54, 92, 381
PsiI	TTATAA	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	28
PsrI	GAACNNNNNNTAC	2 cut(s)	183, 215
PstNI	CAGNNNCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	176, 224
RsaNI	GTAC	2 cut(s)	175, 223
RseI	CAYNNNNRTG	2 cut(s)	447, 480
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	5 cut(s)	21, 50, 53, 91, 380
Sau3AI	GATC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	84, 187
SfaNI	GCATC	1 cut(s)	36
SmiMI	CAYNNNNRTG	2 cut(s)	447, 480
SmlI	CTYRAG	2 cut(s)	278, 400
SmoI	CTYRAG	2 cut(s)	278, 400
Sse9I	AATT	4 cut(s)	291, 320, 391, 513
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	3 cut(s)	16, 86, 418
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	1 cut(s)	78
TasI	AATT	4 cut(s)	291, 320, 391, 513
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	75, 500
TscAI	CASTG	5 cut(s)	21, 30, 62, 91, 176
TseI	GCWGC	4 cut(s)	20, 49, 52, 379
TspDTI	ATGAA	2 cut(s)	139, 333
TspRI	CASTG	5 cut(s)	21, 30, 62, 91, 176
VneI	GTGCAC	1 cut(s)	183
XbaI	TCTAGA	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.