Prupe.5G018700_v2.0.a1

Belongs to the alternative oxidase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
2040794 .. 2043619
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G018700.1

Sequence Viewer

Length: 1101 bp
ATGAGCATGATGCTGGTGAGTCGAAGACACCTGGCGAAATCCATGGTGGGCGTCGCAGGTGGCACAATACGCCTCTTCTCCAGCGCAACAACTACTGCTTGTAGTGGCACCGGAGCAGCAGCAGCAGCAGCAGCCGCCGCCAAACAGTCTACGAGGATGGGTGTTCCTACGTGGACGAAGAGCGGCGCCGTTTACTGGGTTCAGATGGATTGTGGGGCCCGGAGTGCCGGCACCGTGGCGCTGGGTGGCAAGGACGACTACGAGGAAGAGAAGAAACAGCATGCAGCAGATCATGGCTCCAAGCCTTCCGTTGATAACGGTTCTGGCAATAAGGATGAGAAAGGGATCGCCAGTTATTGGGGCGTGGGGCCCACCAAGCTTACCAAGGAAGATGGCACCCAATGGAAATGGACTTGCTTTAGACCATGGGAGACGTACAAAGCCGACGTCTCGATAGATCTGAATAAGCATCACGTGCCAACGACTTTCTTGGACAAAATGGCTTACTGGACCGTCAAGTCTCTCCGATGGCCTACTGACCTTTTCTTCCAGAGACGGTATGGGTGCCGAGCAATGATGCTAGAAACTGTGGCAGCAGTGCCTGGGATGGTAGGAGGGATGCTGCTGCACTGCAAGTCCTTGAGGCGGTTCGAGCACAGCGGAGGGTGGATCAAAGCCCTGCTGGAAGAAGCAGAGAACGAGCGAATGCACCTCATGACCTTCATGGAAGTAGCTAAGCCCAAGTGGTACGAGCGTGCCTTAGTTGTCACAGTTCAAGGTGTCTTCTTCAATGCTTACTTGTTGGGGTATCTGCTCTCCCCTAAATTCGCTCATCGAATGGTCGGGTACCTTGAGGAGGAAGCAATCCACTCCTACACTGAGTTCCTCAAGGAGTTAGATAAAGGGAACATAGAGAATGTGCCAGCTCCAGCCATTGCTATTGATTATTGGCAGCTCCCACCTAACTCTACGTTGAGAGATGTTGTCACGGTTGTTAGGGCAGATGAGGCACATCATCGAGATGTCAATCACTTTGCATCGGACATACACTATCATGGCCGCCAACTGAAAGAATCTCCGGCTCCAATTGGTTACCACTAG

Protein Analysis

367

Amino Acids

40.83

Weight (kDa)

8.63

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
AasI GACNNNNNNGTC 1 cut(s) 517
AatII GACGTC 1 cut(s) 450
Acc36I ACCTGC 1 cut(s) 47
Acc65I GGTACC 1 cut(s) 846
AccB1I GGYRCC 6 cut(s) 107, 185, 230, 395, 564, 846
AccB7I CCANNNNNTGG 1 cut(s) 357
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 149
AciI CCGC 6 cut(s) 135, 138, 183, 646, 660, 1060
AclWI GGATC 2 cut(s) 353, 677
AcoI YGGCCR 1 cut(s) 1057
AcsI RAATTY 1 cut(s) 824
AcvI CACGTG 1 cut(s) 475
AcyI GRCGYC 3 cut(s) 51, 186, 447
AfaI GTAC 3 cut(s) 437, 749, 848
AfiI CCNNNNNNNGG 4 cut(s) 195, 357, 645, 856
AgsI TTSAA 2 cut(s) 776, 790
AjnI CCWGG 2 cut(s) 30, 601
AluBI AGCT 4 cut(s) 379, 734, 926, 955
AluI AGCT 4 cut(s) 379, 734, 926, 955
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 4 cut(s) 425, 454, 525, 547
AlwI GGATC 2 cut(s) 353, 677
AlwNI CAGNNNCTG 1 cut(s) 602
AoxI GGCC 4 cut(s) 216, 368, 530, 1057
ApaI GGGCCC 2 cut(s) 220, 372
ApoI RAATTY 1 cut(s) 824
ArsI GACNNNNNNTTYG 2 cut(s) 432, 464
Asp718I GGTACC 1 cut(s) 846
AspLEI GCGC 3 cut(s) 86, 188, 241
AspS9I GGNCC 5 cut(s) 216, 217, 368, 369, 510
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 510
BaeGI GKGCMC 2 cut(s) 220, 372
BaeI ACNNNNGTAYC 2 cut(s) 739, 772
BanI GGYRCC 6 cut(s) 107, 185, 230, 395, 564, 846
BanII GRGCYC 2 cut(s) 220, 372
BbrPI CACGTG 1 cut(s) 475
BbsI GAAGAC 2 cut(s) 31, 775
Bbv12I GWGCWC 1 cut(s) 657
BccI CCATC 5 cut(s) 151, 199, 386, 522, 601
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 32, 603
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 4 cut(s) 425, 454, 525, 547
BfaI CTAG 2 cut(s) 581, 1099
BfoI RGCGCY 2 cut(s) 189, 242
BfuAI ACCTGC 1 cut(s) 47
BglII AGATCT 1 cut(s) 457
BlpI GCTNAGC 1 cut(s) 735
Bme1390I CCNGG 3 cut(s) 32, 220, 603
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 5 cut(s) 216, 217, 368, 369, 510
BmrFI CCNGG 3 cut(s) 32, 220, 603
BmrI ACTGGG 1 cut(s) 205
BmsI GCATC 4 cut(s) 478, 567, 609, 1046
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 2 cut(s) 31, 775
BpmI CTGGAG 2 cut(s) 64, 912
Bpu1102I GCTNAGC 1 cut(s) 735
BpuEI CTTGAG 3 cut(s) 661, 872, 872
BpuMI CCSGG 1 cut(s) 220
BsaAI YACGTR 2 cut(s) 171, 475
BsaBI GATNNNNATC 1 cut(s) 1026
BsaHI GRCGYC 3 cut(s) 51, 186, 447
BsaJI CCNNGG 5 cut(s) 42, 234, 384, 425, 602
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 357, 645, 856
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 3 cut(s) 200, 351, 512
Bse3DI GCAATG 2 cut(s) 579, 933
Bse8I GATNNNNATC 1 cut(s) 1026
BseBI CCWGG 2 cut(s) 32, 603
BseDI CCNNGG 5 cut(s) 42, 234, 384, 425, 602
BseGI GGATG 4 cut(s) 162, 340, 612, 624
BseJI GATNNNNATC 1 cut(s) 1026
BseLI CCNNNNNNNGG 4 cut(s) 195, 357, 645, 856
BseMI GCAATG 2 cut(s) 579, 933
BseMII CTCAG 1 cut(s) 870
BseNI ACTGG 3 cut(s) 200, 351, 512
BseRI GAGGAG 1 cut(s) 869
BseSI GKGCMC 2 cut(s) 220, 372
BseYI CCCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 611
BshFI GGCC 4 cut(s) 218, 370, 532, 1059
BshNI GGYRCC 6 cut(s) 107, 185, 230, 395, 564, 846
BsiHKAI GWGCWC 1 cut(s) 657
BsiSI CCGG 4 cut(s) 111, 220, 228, 1079
BslI CCNNNNNNNGG 4 cut(s) 195, 357, 645, 856
BsmAI GTCTC 4 cut(s) 425, 454, 525, 547
BsmBI CGTCTC 3 cut(s) 425, 454, 547
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 4 cut(s) 218, 370, 532, 1059
Bsp120I GGGCCC 2 cut(s) 216, 368
Bsp1286I GDGCHC 3 cut(s) 220, 372, 657
Bsp143I GATC 4 cut(s) 289, 345, 457, 669
Bsp1720I GCTNAGC 1 cut(s) 735
Bsp19I CCATGG 2 cut(s) 42, 425
BspACI CCGC 6 cut(s) 135, 138, 183, 646, 660, 1060
BspANI GGCC 4 cut(s) 218, 370, 532, 1059
BspCNI CTCAG 1 cut(s) 871
BspHI TCATGA 1 cut(s) 714
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 2 cut(s) 353, 677
BspQI GCTCTTC 1 cut(s) 173
BspT107I GGYRCC 6 cut(s) 107, 185, 230, 395, 564, 846
BsrBI CCGCTC 1 cut(s) 183
BsrDI GCAATG 2 cut(s) 579, 933
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 3 cut(s) 200, 351, 512
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 5 cut(s) 42, 234, 384, 425, 602
BssMI GATC 4 cut(s) 289, 345, 457, 669
BssNI GRCGYC 3 cut(s) 51, 186, 447
BssT1I CCWWGG 3 cut(s) 42, 384, 425
Bst2UI CCWGG 2 cut(s) 32, 603
Bst4CI ACNGT 8 cut(s) 147, 235, 320, 514, 558, 589, 772, 991
Bst6I CTCTTC 3 cut(s) 80, 173, 261
BstACI GRCGYC 3 cut(s) 51, 186, 447
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBAI YACGTR 2 cut(s) 171, 475
BstC8I GCNNGC 4 cut(s) 229, 282, 756, 924
BstDEI CTNAG 3 cut(s) 735, 760, 879
BstDSI CCRYGG 3 cut(s) 42, 234, 425
BstEII GGTNACC 1 cut(s) 1091
BstENI CCTNNNNNAGG 1 cut(s) 854
BstF5I GGATG 4 cut(s) 162, 340, 612, 624
BstH2I RGCGCY 2 cut(s) 189, 242
BstHHI GCGC 3 cut(s) 86, 188, 241
BstKTI GATC 4 cut(s) 292, 348, 460, 672
BstMAI GTCTC 4 cut(s) 425, 454, 525, 547
BstMBI GATC 4 cut(s) 289, 345, 457, 669
BstNI CCWGG 2 cut(s) 32, 603
BstNSI RCATGY 1 cut(s) 284
BstPI GGTNACC 1 cut(s) 1091
BstSCI CCNGG 3 cut(s) 30, 218, 601
BstSLI GKGCMC 2 cut(s) 220, 372
BstV2I GAAGAC 2 cut(s) 31, 775
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 4 cut(s) 218, 370, 532, 1059
BtgI CCRYGG 3 cut(s) 42, 234, 425
BtsCI GGATG 4 cut(s) 162, 340, 612, 624
BtsI GCAGTG 2 cut(s) 603, 628
BtsIMutI CAGTG 3 cut(s) 603, 628, 876
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 4 cut(s) 229, 282, 756, 924
CaiI CAGNNNCTG 1 cut(s) 602
CciI TCATGA 1 cut(s) 714
CfoI GCGC 3 cut(s) 86, 188, 241
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 5 cut(s) 216, 217, 368, 369, 510
CseI GACGC 1 cut(s) 40
Csp6I GTAC 3 cut(s) 436, 748, 847
CviAII CATG 8 cut(s) 7, 43, 281, 293, 426, 715, 724, 1055
CviQI GTAC 3 cut(s) 436, 748, 847
DdeI CTNAG 3 cut(s) 735, 760, 879
DinI GGCGCC 1 cut(s) 187
DpnI GATC 4 cut(s) 291, 347, 459, 671
DpnII GATC 4 cut(s) 289, 345, 457, 669
DrdI GACNNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 517
EaeI YGGCCR 1 cut(s) 1057
Eam1104I CTCTTC 3 cut(s) 80, 173, 261
EarI CTCTTC 3 cut(s) 80, 173, 261
Eco130I CCWWGG 3 cut(s) 42, 384, 425
Eco24I GRGCYC 2 cut(s) 220, 372
Eco47I GGWCC 1 cut(s) 510
Eco72I CACGTG 1 cut(s) 475
Eco91I GGTNACC 1 cut(s) 1091
EcoNI CCTNNNNNAGG 1 cut(s) 854
EcoO109I RGGNCCY 2 cut(s) 216, 368
EcoO65I GGTNACC 1 cut(s) 1091
EcoRII CCWGG 2 cut(s) 30, 601
EcoT14I CCWWGG 3 cut(s) 42, 384, 425
EcoT38I GRGCYC 2 cut(s) 220, 372
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 3 cut(s) 42, 384, 425
Esp3I CGTCTC 3 cut(s) 425, 454, 547
FaeI CATG 8 cut(s) 10, 46, 284, 296, 429, 718, 727, 1058
FatI CATG 8 cut(s) 6, 42, 280, 292, 425, 714, 723, 1054
FblI GTMKAC 1 cut(s) 149
FokI GGATG 4 cut(s) 169, 347, 619, 631
FriOI GRGCYC 2 cut(s) 220, 372
FspBI CTAG 2 cut(s) 581, 1099
GlaI GCGC 3 cut(s) 85, 187, 240
GsaI CCCAGC 1 cut(s) 245
GsuI CTGGAG 2 cut(s) 64, 912
HaeII RGCGCY 2 cut(s) 189, 242
HaeIII GGCC 4 cut(s) 218, 370, 532, 1059
HapII CCGG 4 cut(s) 111, 220, 228, 1079
HgaI GACGC 1 cut(s) 40
HhaI GCGC 3 cut(s) 86, 188, 241
Hin1I GRCGYC 3 cut(s) 51, 186, 447
Hin1II CATG 8 cut(s) 10, 46, 284, 296, 429, 718, 727, 1058
Hin6I GCGC 3 cut(s) 84, 186, 239
HinP1I GCGC 3 cut(s) 84, 186, 239
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 2 cut(s) 19, 1073
HpaII CCGG 4 cut(s) 111, 220, 228, 1079
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 3 cut(s) 150, 174, 193
Hpy188I TCNGA 4 cut(s) 204, 462, 527, 1042
Hpy188III TCNNGA 4 cut(s) 451, 550, 715, 1019
Hpy8I GTNNAC 3 cut(s) 150, 174, 193
Hpy99I CGWCG 2 cut(s) 56, 449
HpyAV CCTTC 2 cut(s) 315, 730
HpyCH4III ACNGT 8 cut(s) 147, 235, 320, 514, 558, 589, 772, 991
HpyCH4IV ACGT 5 cut(s) 170, 434, 447, 474, 971
HpyCH4V TGCA 5 cut(s) 284, 628, 633, 709, 1037
HpyF3I CTNAG 3 cut(s) 735, 760, 879
HpySE526I ACGT 5 cut(s) 170, 434, 447, 474, 971
Hsp92I GRCGYC 3 cut(s) 51, 186, 447
Hsp92II CATG 8 cut(s) 10, 46, 284, 296, 429, 718, 727, 1058
HspAI GCGC 3 cut(s) 84, 186, 239
KasI GGCGCC 1 cut(s) 185
KpnI GGTACC 1 cut(s) 850
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Kzo9I GATC 4 cut(s) 289, 345, 457, 669
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 5 cut(s) 113, 302, 931, 960, 1087
LweI GCATC 4 cut(s) 478, 567, 609, 1046
MaeI CTAG 2 cut(s) 581, 1099
MaeII ACGT 5 cut(s) 170, 434, 447, 474, 971
MaeIII GTNAC 3 cut(s) 766, 985, 1091
MalI GATC 4 cut(s) 291, 347, 459, 671
MbiI CCGCTC 1 cut(s) 183
MboI GATC 4 cut(s) 289, 345, 457, 669
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 3 cut(s) 220, 372, 657
MluCI AATT 2 cut(s) 824, 1086
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 227
MslI CAYNNNNRTG 2 cut(s) 1020, 1053
MspA1I CMGCKG 1 cut(s) 660
MspI CCGG 4 cut(s) 111, 220, 228, 1079
MspR9I CCNGG 3 cut(s) 32, 220, 603
MunI CAATTG 1 cut(s) 1086
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 2 cut(s) 32, 603
NaeI GCCGGC 1 cut(s) 229
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 220
NcoI CCATGG 2 cut(s) 42, 425
NdeII GATC 4 cut(s) 289, 345, 457, 669
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 8 cut(s) 10, 46, 284, 296, 429, 718, 727, 1058
NmeAIII GCCGAG 1 cut(s) 593
NmuCI GTSAC 2 cut(s) 766, 985
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PagI TCATGA 1 cut(s) 714
PaqCI CACCTGC 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 173
PctI GAATGC 1 cut(s) 711
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 1073
PflMI CCANNNNNTGG 1 cut(s) 357
PleI GAGTC 1 cut(s) 27
PluTI GGCGCC 1 cut(s) 189
PmaCI CACGTG 1 cut(s) 475
PmlI CACGTG 1 cut(s) 475
PpsI GAGTC 1 cut(s) 27
Ppu21I YACGTR 2 cut(s) 171, 475
Psp6I CCWGG 2 cut(s) 30, 601
PspCI CACGTG 1 cut(s) 475
PspEI GGTNACC 1 cut(s) 1091
PspFI CCCAGC 1 cut(s) 241
PspGI CCWGG 2 cut(s) 30, 601
PspOMI GGGCCC 2 cut(s) 216, 368
PspPI GGNCC 5 cut(s) 216, 217, 368, 369, 510
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 3 cut(s) 437, 749, 848
RsaNI GTAC 3 cut(s) 436, 748, 847
RseI CAYNNNNRTG 2 cut(s) 1020, 1053
SapI GCTCTTC 1 cut(s) 173
Sau3AI GATC 4 cut(s) 289, 345, 457, 669
Sau96I GGNCC 5 cut(s) 216, 217, 368, 369, 510
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 3 cut(s) 32, 220, 603
SduI GDGCHC 3 cut(s) 220, 372, 657
SfaNI GCATC 4 cut(s) 478, 567, 609, 1046
SfoI GGCGCC 1 cut(s) 187
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 2 cut(s) 1020, 1053
SmlI CTYRAG 3 cut(s) 640, 851, 887
SmoI CTYRAG 3 cut(s) 640, 851, 887
SphI GCATGC 1 cut(s) 284
Sse9I AATT 2 cut(s) 824, 1086
SsiI CCGC 6 cut(s) 135, 138, 183, 646, 660, 1060
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 2 cut(s) 581, 1099
StyD4I CCNGG 3 cut(s) 30, 218, 601
StyI CCWWGG 3 cut(s) 42, 384, 425
TaaI ACNGT 8 cut(s) 147, 235, 320, 514, 558, 589, 772, 991
TaiI ACGT 5 cut(s) 173, 437, 450, 477, 974
TaqI TCGA 5 cut(s) 22, 452, 651, 835, 1018
TasI AATT 2 cut(s) 824, 1086
TauI GCSGC 4 cut(s) 137, 140, 186, 1062
TfiI GAWTC 1 cut(s) 1073
TscAI CASTG 3 cut(s) 603, 635, 883
TseFI GTSAC 2 cut(s) 766, 985
Tsp45I GTSAC 2 cut(s) 766, 985
TspDTI ATGAA 1 cut(s) 712
TspGWI ACGGA 1 cut(s) 298
TspRI CASTG 3 cut(s) 603, 635, 883
Van91I CCANNNNNTGG 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 510
XagI CCTNNNNNAGG 1 cut(s) 854
XapI RAATTY 1 cut(s) 824
XceI RCATGY 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 2 cut(s) 581, 1099
ZraI GACGTC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.