Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000328.1

Orthogroup ID

OG0006091

Physical Location & Seq

Genomic Coordinates Forward (+)

74894 .. 76302

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000328.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgactggcacgcaagcgtgcaggcacatggcgaagtcggcggcgcacgtagcaagtgcgcgcctcttctccacggcagccagagctgccaccactaatgcgcccgcggccaaacaactgtcctccataatcattcctctaaaggatgcggctgcgggcgcatggtggaacaacggcagcattatttaccccgttcagagggtacgcagtggtagcactctggctctcggccgtcaggagaagcagcaggaggaggctgatcatagcaactctgccgtttcggttgccggacacggtggtggtaataaggacgatgaggagaaggccatcaccagctactggggggtgggaccgaacaagattaccagggaagacggtactgaatggaaatggaattgcttcagaccatgggagacgtacaaggccgacacctcgatagatctccagaagcatcatgtgcctacaactttgctggacaaaatggcctactggactgtcaagtctctccgatggcctacggacctattcttccagaggcgatatgggtgcagggcaatgatgctggagacagtggcagcagtgcctggaatggtaggagggatgctgctgcactgcaaatcgcttaggcgattcgagcacagtggcggctggatcaaagctcttctagaagaagccgagaacgagcgtatgcacctcatgaccttcatggaagtcgccaagccccagtggtacgagcgtgcacttgtatttgctgttcaaggtgttttcttcaatgcgtacttcttgggatatatgatttcacccaagtttgctcatagaatggttggatatcttgaggaggaagcaattcactcatataccgagttcctcaatgaattagacaaaggtaacattgagaatgttccagctccagctattgctattgattattggcagctaccttccaattccaccttgagagatgttgttacagttgttagggcagacgaggctcaccaccgagatgtcaatcacttcgcttcggacatacattataatggacgtgaactgaaggaatctccagctccaattggttaccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

360

Amino Acids

40.51

Weight (kDa)

6.98

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32350 AT1G32350 AT3G22360 AT3G22370 AT3G27620 AT5G63625 AT5G64687 AT5G64687
fragaria_vesca	FvH4_5g24160
malus_domestica	MD00G1148200.v1.1
prunus_persica	Prupe.5G018700_v2.0.a1
pyrus_communis	pycom16g25550
rosa_chinensis	RchiOBHm_Chr7g0213861 RchiOBHm_Chr7g0213931
rosa_laevigata	RLG00000002775
rosa_multiflora	Rmu_co8428533.1_g000001 Rmu_sc0000328.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245650 Rroxscaffold_3G00245670
rosa_rugosa	Rorug07G0144800
rosa_samantha	Rh7AG277100 Rh7AG277800 Rh7BG271200 Rh7CG296100 Rh7CG296900 Rh7DG283500
rosa_wichuraiana	Rw7G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1035
AasI	GACNNNNNNGTC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	2 cut(s)	61, 107
AciI	CCGC	6 cut(s)	41, 105, 107, 149, 155, 645
AclWI	GGATC	1 cut(s)	659
AcoI	YGGCCR	2 cut(s)	108, 229
AcuI	CTGAAG	2 cut(s)	385, 1070
AfaI	GTAC	5 cut(s)	204, 379, 419, 731, 779
AfiI	CCNNNNNNNGG	2 cut(s)	198, 339
AgsI	TTSAA	2 cut(s)	758, 772
AjiI	CACGTC	1 cut(s)	1043
AjnI	CCWGG	2 cut(s)	365, 583
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	7 cut(s)	86, 336, 659, 908, 914, 937, 1064
AluI	AGCT	7 cut(s)	86, 336, 659, 908, 914, 937, 1064
Alw21I	GWGCWC	2 cut(s)	639, 742
Alw26I	GTCTC	3 cut(s)	407, 507, 560
Alw44I	GTGCAC	1 cut(s)	738
AlwI	GGATC	1 cut(s)	659
AlwNI	CAGNNNCTG	2 cut(s)	339, 584
AoxI	GGCC	6 cut(s)	108, 229, 324, 423, 483, 512
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	9 cut(s)	77, 86, 152, 177, 244, 575, 604, 607, 934
Asp700I	GAANNNNTTC	2 cut(s)	398, 846
AspLEI	GCGC	5 cut(s)	46, 61, 63, 103, 161
AspS9I	GGNCC	2 cut(s)	350, 520
AsuHPI	GGTGA	3 cut(s)	322, 792, 986
AvaII	GGWCC	2 cut(s)	350, 520
BaeGI	GKGCMC	1 cut(s)	742
BaeI	ACNNNNGTAYC	2 cut(s)	721, 754
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	2 cut(s)	639, 742
BbvI	GCAGC	9 cut(s)	73, 89, 139, 189, 256, 587, 591, 594, 946
BccI	CCATC	2 cut(s)	335, 504
BceAI	ACGGC	4 cut(s)	90, 190, 216, 260
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BciT130I	CCWGG	2 cut(s)	367, 585
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	407, 507, 560
BfaI	CTAG	1 cut(s)	665
BglII	AGATCT	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	367, 585
Bme18I	GGWCC	2 cut(s)	350, 520
BmgBI	CACGTC	1 cut(s)	1043
BmgT120I	GGNCC	2 cut(s)	350, 520
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	367, 585
BmrI	ACTGGG	2 cut(s)	349, 718
BmsI	GCATC	4 cut(s)	136, 460, 549, 591
BmuI	ACTGGG	2 cut(s)	349, 718
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	4 cut(s)	428, 584, 894, 1044
Bpu10I	CCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	2 cut(s)	854, 976
BsaAI	YACGTR	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	1008
BsaJI	CCNNGG	4 cut(s)	72, 105, 366, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 339
Bse1I	ACTGG	4 cut(s)	10, 344, 494, 724
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	1008
BseBI	CCWGG	2 cut(s)	367, 585
BseDI	CCNNGG	4 cut(s)	72, 105, 366, 407
BseGI	GGATG	2 cut(s)	151, 606
BseJI	GATNNNNATC	1 cut(s)	1008
BseLI	CCNNNNNNNGG	2 cut(s)	198, 339
BseMI	GCAATG	1 cut(s)	561
BseNI	ACTGG	4 cut(s)	10, 344, 494, 724
BsePI	GCGCGC	1 cut(s)	59
BseRI	GAGGAG	3 cut(s)	266, 332, 851
BseSI	GKGCMC	1 cut(s)	742
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	9 cut(s)	73, 89, 139, 189, 256, 587, 591, 594, 946
BsgI	GTGCAG	3 cut(s)	40, 568, 593
Bsh1236I	CGCG	2 cut(s)	61, 107
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	6 cut(s)	110, 231, 326, 425, 485, 514
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	2 cut(s)	639, 742
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	2 cut(s)	198, 339
BsmAI	GTCTC	3 cut(s)	407, 507, 560
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	6 cut(s)	110, 231, 326, 425, 485, 514
Bsp1286I	GDGCHC	2 cut(s)	639, 742
Bsp143I	GATC	3 cut(s)	259, 439, 651
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	6 cut(s)	41, 105, 107, 149, 155, 645
BspANI	GGCC	6 cut(s)	110, 231, 326, 425, 485, 514
BspFNI	CGCG	2 cut(s)	61, 107
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	659
BspQI	GCTCTTC	1 cut(s)	666
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	4 cut(s)	10, 344, 494, 724
BssECI	CCNNGG	4 cut(s)	72, 105, 366, 407
BssHII	GCGCGC	1 cut(s)	59
BssMI	GATC	3 cut(s)	259, 439, 651
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	2 cut(s)	367, 585
Bst4CI	ACNGT	7 cut(s)	120, 296, 377, 496, 571, 641, 973
Bst6I	CTCTTC	2 cut(s)	71, 666
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	8 cut(s)	11, 15, 19, 23, 61, 105, 157, 738
BstDEI	CTNAG	1 cut(s)	623
BstDSI	CCRYGG	3 cut(s)	72, 105, 407
BstEII	GGTNACC	1 cut(s)	1073
BstF5I	GGATG	2 cut(s)	151, 606
BstFNI	CGCG	2 cut(s)	61, 107
BstHHI	GCGC	5 cut(s)	46, 61, 63, 103, 161
BstKTI	GATC	3 cut(s)	262, 442, 654
BstMAI	GTCTC	3 cut(s)	407, 507, 560
BstMBI	GATC	3 cut(s)	259, 439, 651
BstMCI	CGRYCG	1 cut(s)	232
BstNI	CCWGG	2 cut(s)	367, 585
BstPI	GGTNACC	1 cut(s)	1073
BstSCI	CCNGG	2 cut(s)	365, 583
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	2 cut(s)	61, 107
BstV1I	GCAGC	9 cut(s)	73, 89, 139, 189, 256, 587, 591, 594, 946
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	6 cut(s)	110, 231, 326, 425, 485, 514
BtgI	CCRYGG	3 cut(s)	72, 105, 407
BtrI	CACGTC	1 cut(s)	1043
BtsCI	GGATG	2 cut(s)	151, 606
BtsI	GCAGTG	3 cut(s)	214, 585, 610
BtsIMutI	CAGTG	6 cut(s)	214, 576, 585, 610, 646, 731
Cac8I	GCNNGC	8 cut(s)	11, 15, 19, 23, 61, 105, 157, 738
CaiI	CAGNNNCTG	2 cut(s)	339, 584
CciI	TCATGA	1 cut(s)	696
CfoI	GCGC	5 cut(s)	46, 61, 63, 103, 161
Cfr13I	GGNCC	2 cut(s)	350, 520
Cfr42I	CCGCGG	1 cut(s)	108
Csp6I	GTAC	5 cut(s)	203, 378, 418, 730, 778
CviAII	CATG	6 cut(s)	28, 162, 408, 455, 697, 706
CviQI	GTAC	5 cut(s)	203, 378, 418, 730, 778
DdeI	CTNAG	1 cut(s)	623
DpnI	GATC	3 cut(s)	261, 441, 653
DpnII	GATC	3 cut(s)	259, 439, 651
DrdI	GACNNNNNNGTC	1 cut(s)	499
DseDI	GACNNNNNNGTC	1 cut(s)	499
EaeI	YGGCCR	2 cut(s)	108, 229
EagI	CGGCCG	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	71, 666
EarI	CTCTTC	2 cut(s)	71, 666
EclXI	CGGCCG	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	407
Eco32I	GATATC	1 cut(s)	830
Eco47I	GGWCC	2 cut(s)	350, 520
Eco52I	CGGCCG	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	385, 1070
Eco91I	GGTNACC	1 cut(s)	1073
EcoO65I	GGTNACC	1 cut(s)	1073
EcoRII	CCWGG	2 cut(s)	365, 583
EcoRV	GATATC	1 cut(s)	830
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	6 cut(s)	31, 165, 411, 458, 700, 709
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	6 cut(s)	27, 161, 407, 454, 696, 705
FauI	CCCGC	2 cut(s)	112, 148
FbaI	TGATCA	1 cut(s)	259
FokI	GGATG	2 cut(s)	158, 613
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	5 cut(s)	45, 60, 62, 102, 160
GsuI	CTGGAG	4 cut(s)	428, 584, 894, 1044
HaeIII	GGCC	6 cut(s)	110, 231, 326, 425, 485, 514
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	5 cut(s)	46, 61, 63, 103, 161
Hin1II	CATG	6 cut(s)	31, 165, 411, 458, 700, 709
Hin6I	GCGC	5 cut(s)	44, 59, 61, 101, 159
HinP1I	GCGC	5 cut(s)	44, 59, 61, 101, 159
HinfI	GANTC	2 cut(s)	630, 1055
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	3 cut(s)	322, 792, 986
Hpy166II	GTNNAC	2 cut(s)	740, 1046
Hpy188I	TCNGA	4 cut(s)	198, 404, 509, 1024
Hpy188III	TCNNGA	6 cut(s)	236, 445, 532, 665, 697, 833
Hpy8I	GTNNAC	2 cut(s)	740, 1046
HpyAV	CCTTC	4 cut(s)	316, 712, 951, 1045
HpyCH4III	ACNGT	7 cut(s)	120, 296, 377, 496, 571, 641, 973
HpyCH4IV	ACGT	3 cut(s)	48, 416, 1042
HpyCH4V	TGCA	6 cut(s)	21, 549, 610, 615, 691, 740
HpyF3I	CTNAG	1 cut(s)	623
HpySE526I	ACGT	3 cut(s)	48, 416, 1042
Hsp92II	CATG	6 cut(s)	31, 165, 411, 458, 700, 709
HspAI	GCGC	5 cut(s)	44, 59, 61, 101, 159
Ksp22I	TGATCA	1 cut(s)	259
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	259, 439, 651
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	913, 1069
Lsp1109I	GCAGC	9 cut(s)	73, 89, 139, 189, 256, 587, 591, 594, 946
LweI	GCATC	4 cut(s)	136, 460, 549, 591
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	3 cut(s)	48, 416, 1042
MaeIII	GTNAC	3 cut(s)	887, 967, 1073
MalI	GATC	3 cut(s)	261, 441, 653
MboI	GATC	3 cut(s)	259, 439, 651
MboII	GAAGA	6 cut(s)	58, 383, 520, 653, 680, 760
MfeI	CAATTG	1 cut(s)	1068
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	639, 742
MluCI	AATT	5 cut(s)	394, 846, 875, 946, 1068
MmeI	TCCRAC	1 cut(s)	805
MroXI	GAANNNNTTC	2 cut(s)	398, 846
MslI	CAYNNNNRTG	3 cut(s)	297, 1002, 1035
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	367, 585
MunI	CAATTG	1 cut(s)	1068
MvaI	CCWGG	2 cut(s)	367, 585
MvnI	CGCG	2 cut(s)	61, 107
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	3 cut(s)	259, 439, 651
NlaIII	CATG	6 cut(s)	31, 165, 411, 458, 700, 709
NlaIV	GGNNCC	1 cut(s)	351
NmeAIII	GCCGAG	2 cut(s)	207, 700
OliI	CACNNNNGTG	1 cut(s)	297
PagI	TCATGA	1 cut(s)	696
PauI	GCGCGC	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	666
PdmI	GAANNNNTTC	2 cut(s)	398, 846
PfeI	GAWTC	2 cut(s)	630, 1055
PflMI	CCANNNNNTGG	1 cut(s)	339
Ppu21I	YACGTR	1 cut(s)	49
PsiI	TTATAA	1 cut(s)	1035
Psp6I	CCWGG	2 cut(s)	365, 583
PspEI	GGTNACC	1 cut(s)	1073
PspGI	CCWGG	2 cut(s)	365, 583
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	2 cut(s)	350, 520
PsrI	GAACNNNNNNTAC	2 cut(s)	738, 770
PstNI	CAGNNNCTG	2 cut(s)	339, 584
PsuI	RGATCY	1 cut(s)	439
PteI	GCGCGC	1 cut(s)	59
RsaI	GTAC	5 cut(s)	204, 379, 419, 731, 779
RsaNI	GTAC	5 cut(s)	203, 378, 418, 730, 778
RseI	CAYNNNNRTG	3 cut(s)	297, 1002, 1035
SacII	CCGCGG	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	666
Sau3AI	GATC	3 cut(s)	259, 439, 651
Sau96I	GGNCC	2 cut(s)	350, 520
ScrFI	CCNGG	2 cut(s)	367, 585
SduI	GDGCHC	2 cut(s)	639, 742
SfaNI	GCATC	4 cut(s)	136, 460, 549, 591
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SinI	GGWCC	2 cut(s)	350, 520
SmiMI	CAYNNNNRTG	3 cut(s)	297, 1002, 1035
SmlI	CTYRAG	2 cut(s)	833, 955
SmoI	CTYRAG	2 cut(s)	833, 955
Sse9I	AATT	5 cut(s)	394, 846, 875, 946, 1068
SsiI	CCGC	6 cut(s)	41, 105, 107, 149, 155, 645
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	2 cut(s)	365, 583
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	7 cut(s)	120, 296, 377, 496, 571, 641, 973
TaiI	ACGT	3 cut(s)	51, 419, 1045
TaqI	TCGA	2 cut(s)	434, 633
TaqII	GACCGA	1 cut(s)	367
TasI	AATT	5 cut(s)	394, 846, 875, 946, 1068
TauI	GCSGC	4 cut(s)	44, 110, 152, 648
TfiI	GAWTC	2 cut(s)	630, 1055
TscAI	CASTG	6 cut(s)	214, 576, 585, 617, 646, 731
TseI	GCWGC	9 cut(s)	77, 86, 152, 177, 244, 575, 604, 607, 934
TspDTI	ATGAA	2 cut(s)	694, 888
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	6 cut(s)	214, 576, 585, 617, 646, 731
Van91I	CCANNNNNTGG	1 cut(s)	339
VneI	GTGCAC	1 cut(s)	738
VpaK11BI	GGWCC	2 cut(s)	350, 520
XbaI	TCTAGA	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmnI	GAANNNNTTC	2 cut(s)	398, 846
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.