Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006091

Physical Location & Seq

Genomic Coordinates Reverse (-)

25470218 .. 25471984

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63625.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGATTCGCTTGCACGATTACTTTGGGGGAGAAAGCTTCGACTAAGGAGGAGGACGCGAATCAGAGGAAAACAGAGAACGAATCCACCGGTGGAGACAAAGGAATCGCGATGTTAAATTTCAATGCATTGAGAACAAACCGGGTTAAGCATGCTGTCCCATCCTACGGGTCCTTAAGCCGTGTTATTAGTTCAACGGCTTTTTACGCAATAAAGAAGATTTTTCATGTTCAAGCAGAGGCTCCAAGCAATCTTTGTTACGGAACATTACAGAAGACAAGTGACGATTCAAAAACTGAACTCCATTACCAATCGAAGACGAACGAGAAGGACGTAGCACGTTTGCATTGTTTTCATTCTCAATTCTCGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009060 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0010230 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

124

Amino Acids

13.83

Weight (kDa)

9.03

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32350 AT1G32350 AT3G22360 AT3G22370 AT3G27620 AT5G63625 AT5G64687 AT5G64687
fragaria_vesca	FvH4_5g24160
malus_domestica	MD00G1148200.v1.1
prunus_persica	Prupe.5G018700_v2.0.a1
pyrus_communis	pycom16g25550
rosa_chinensis	RchiOBHm_Chr7g0213861 RchiOBHm_Chr7g0213931
rosa_laevigata	RLG00000002775
rosa_multiflora	Rmu_co8428533.1_g000001 Rmu_sc0000328.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245650 Rroxscaffold_3G00245670
rosa_rugosa	Rorug07G0144800
rosa_samantha	Rh7AG277100 Rh7AG277800 Rh7BG271200 Rh7CG296100 Rh7CG296900 Rh7DG283500
rosa_wichuraiana	Rw7G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	59, 110
AcsI	RAATTY	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	175
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	124, 195, 233, 291
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	118
AsiGI	ACCGGT	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	281, 323
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	3 cut(s)	165, 213, 355
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	172, 243
BmrFI	CCNGG	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	281, 323
BpuMI	CCSGG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	89
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	65
Bsh1236I	CGCG	2 cut(s)	59, 110
BshTI	ACCGGT	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	90, 142
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	143
Bsp68I	TCGCGA	1 cut(s)	110
BspFNI	CGCG	2 cut(s)	59, 110
BspLI	GGNNCC	2 cut(s)	172, 243
BspTI	CTTAAG	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BstAFI	CTTAAG	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	13, 153
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	161
BstFNI	CGCG	2 cut(s)	59, 110
BstMAI	GTCTC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	141
BstUI	CGCG	2 cut(s)	59, 110
BstV2I	GAAGAC	2 cut(s)	281, 323
BtgZI	GCGATG	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	161
BtuMI	TCGCGA	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	13, 153
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	65
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	2 cut(s)	152, 227
CviJI	RGCY	4 cut(s)	38, 180, 200, 242
CviKI_1	RGCY	4 cut(s)	38, 180, 200, 242
DdeI	CTNAG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	2 cut(s)	155, 230
FaiI	YATR	2 cut(s)	153, 228
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	151, 226
FokI	GGATG	1 cut(s)	148
HapII	CCGG	2 cut(s)	90, 142
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	155, 230
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	5 cut(s)	6, 61, 83, 105, 287
HpaII	CCGG	2 cut(s)	90, 142
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	333, 340
HpyCH4V	TGCA	3 cut(s)	15, 128, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	2 cut(s)	333, 340
Hsp92II	CATG	2 cut(s)	155, 230
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	2 cut(s)	103, 155
MaeII	ACGT	2 cut(s)	333, 340
MaeIII	GTNAC	2 cut(s)	257, 281
MboII	GAAGA	3 cut(s)	229, 286, 328
MluCI	AATT	2 cut(s)	118, 362
MnlI	CCTC	4 cut(s)	43, 46, 60, 232
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	3 cut(s)	116, 147, 176
MspCI	CTTAAG	1 cut(s)	175
MspI	CCGG	2 cut(s)	90, 142
MspR9I	CCNGG	1 cut(s)	143
MvnI	CGCG	2 cut(s)	59, 110
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	1 cut(s)	143
NlaIII	CATG	2 cut(s)	155, 230
NlaIV	GGNNCC	2 cut(s)	172, 243
NmuCI	GTSAC	1 cut(s)	281
NruI	TCGCGA	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	5 cut(s)	6, 61, 83, 105, 287
PinAI	ACCGGT	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	172, 243
PspPI	GGNCC	1 cut(s)	171
PspPPI	RGGWCCY	1 cut(s)	171
RruI	TCGCGA	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	116, 147, 176
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	3 cut(s)	40, 336, 343
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
SphI	GCATGC	1 cut(s)	155
Sse9I	AATT	2 cut(s)	118, 362
StyD4I	CCNGG	1 cut(s)	141
TaiI	ACGT	2 cut(s)	336, 343
TaqI	TCGA	2 cut(s)	41, 314
TasI	AATT	2 cut(s)	118, 362
TfiI	GAWTC	5 cut(s)	6, 61, 83, 105, 287
Tru1I	TTAA	3 cut(s)	116, 147, 176
Tru9I	TTAA	3 cut(s)	116, 147, 176
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	215, 344
TspGWI	ACGGA	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.