Rh7BG271200

Belongs to the alternative oxidase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
24932060 .. 24934479
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG271200.1

Sequence Viewer

Length: 1071 bp
ATGATGGCGATGACTCGCACGCAAGCGTGCAGGCACATGGCGAAGTCGGCGGCGCACGTAGCAAGTGCGCGCCTCTTCTCCACGGCAGCCAGAGCTGCCACCACTAATGCGCCCATAATCATTCCTCTAAAGGATGCGGCCGCGGGCGCATGGTGGAACAACGGCAGCATCATTTACCCTGTTCAGAGGGTACGCAGTGGTAGCACTCTGGCTCTCGGCCGTCAGGAGAAGCAACAGGAGGAGGCTGATCATAGCAACTCCGCCGTTTCGGTTGCCGGACACGGTGGTGGTAATAAGGACGATGAGGAGAAGGCCATCACCAGCTACTGGGGGGTGGGACCGAACAAGATTACCAAGGAAGACGGTACTGAATGGAAATGGAATTGCTTCAGACCATGGGAGACGTACAAGGCCGACACCTCGATAGATCTCCAGAAGCATCATGTGCCTACAACTTTGATGGACAAAATGGCCTACTGGACTGTCAAGTCTCTCCGATGGCCTACCGACCTATTCTTCCAGAGGCGATATGGGTGCAGGGCAATGATGCTGGAGACAGTGGCAGCAGTGCCTGGAATGGTAGGAGGGATGCTGCTGCACTGCAAATCGCTTAGGCGATTCGAGCACAGTGGCGGATGGATCAAAGCTCTTCTAGAAGAAGCCGAGAACGAGCGTATGCACCTCATGACCTTCATGGAAGTCGCCAAGCCCCGGTGGTACGAGCGTGCACTTGTATTTGCTGTTCAAGGTGTTTTCTTCAATGCGTACTTCTTGGGATATATGATTTCAGCCAAGTTGGCTCATAGAATGGTTGGATATCTTGAGGAGGAAGCAATTCACTCATATACCGAGTTCCTCAAGGAATTAGACAAAGGTAACATTGAGAATGTTCCAGCTCCAGCTATTGCTATCGATTATTGGCAGCTACCACCCAATTCCACCTTGAGAGATGTTGTTACAGTTGTTAGGGCAGACGAGGCTCACCACCGAGATGTCAATCACTTTGCTTCGGACATACATTATAATGGACGTCAACTGAAGGAATCTCCAGCTCCAATTGGTTACCATTGA

Protein Analysis

356

Amino Acids

40.24

Weight (kDa)

8.24

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 145 - 337 9.3e-83 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1023
AasI GACNNNNNNGTC 1 cut(s) 487
AatII GACGTC 1 cut(s) 1033
AccB7I CCANNNNNTGG 1 cut(s) 327
AccII CGCG 2 cut(s) 70, 143
AciI CCGC 6 cut(s) 50, 137, 141, 143, 261, 633
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 2 cut(s) 138, 217
AcuI CTGAAG 2 cut(s) 373, 1058
AcyI GRCGYC 1 cut(s) 1030
AfaI GTAC 5 cut(s) 192, 367, 407, 719, 767
AfiI CCNNNNNNNGG 2 cut(s) 327, 711
AgsI TTSAA 2 cut(s) 746, 760
AjnI CCWGG 1 cut(s) 571
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 7 cut(s) 95, 324, 647, 896, 902, 925, 1052
AluI AGCT 7 cut(s) 95, 324, 647, 896, 902, 925, 1052
Alw21I GWGCWC 2 cut(s) 627, 730
Alw26I GTCTC 3 cut(s) 395, 495, 548
Alw44I GTGCAC 1 cut(s) 726
AlwI GGATC 1 cut(s) 647
AlwNI CAGNNNCTG 2 cut(s) 327, 572
AoxI GGCC 6 cut(s) 138, 217, 312, 411, 471, 500
ApaLI GTGCAC 1 cut(s) 726
ApeKI GCWGC 7 cut(s) 86, 95, 165, 563, 592, 595, 922
Asp700I GAANNNNTTC 2 cut(s) 386, 834
AspLEI GCGC 5 cut(s) 55, 70, 72, 112, 149
AspS9I GGNCC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 712
AsuHPI GGTGA 2 cut(s) 310, 974
AvaII GGWCC 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 730
BaeI ACNNNNGTAYC 2 cut(s) 709, 742
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 627, 730
BbvI GCAGC 7 cut(s) 82, 98, 177, 575, 579, 582, 934
BccI CCATC 4 cut(s) 323, 454, 492, 630
BceAI ACGGC 4 cut(s) 99, 178, 204, 248
BcgI CGANNNNNNTGC 2 cut(s) 516, 550
BciT130I CCWGG 1 cut(s) 573
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 1 cut(s) 712
BcoDI GTCTC 3 cut(s) 395, 495, 548
BfaI CTAG 1 cut(s) 653
BglI GCCNNNNNGGC 1 cut(s) 797
BglII AGATCT 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 573, 712
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 573, 712
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 5 cut(s) 124, 177, 448, 537, 579
BmuI ACTGGG 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 4 cut(s) 416, 572, 882, 1032
Bpu10I CCTNAGC 1 cut(s) 611
BpuEI CTTGAG 3 cut(s) 842, 842, 964
BpuMI CCSGG 1 cut(s) 712
Bsa29I ATCGAT 1 cut(s) 912
BsaAI YACGTR 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 996
BsaHI GRCGYC 1 cut(s) 1030
BsaJI CCNNGG 5 cut(s) 81, 141, 354, 395, 710
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 711
Bse1I ACTGG 2 cut(s) 332, 482
Bse3DI GCAATG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 996
BseBI CCWGG 1 cut(s) 573
BseCI ATCGAT 1 cut(s) 912
BseDI CCNNGG 5 cut(s) 81, 141, 354, 395, 710
BseGI GGATG 3 cut(s) 139, 594, 641
BseJI GATNNNNATC 1 cut(s) 996
BseLI CCNNNNNNNGG 2 cut(s) 327, 711
BseMI GCAATG 1 cut(s) 549
BseNI ACTGG 2 cut(s) 332, 482
BsePI GCGCGC 1 cut(s) 68
BseRI GAGGAG 3 cut(s) 254, 320, 839
BseSI GKGCMC 1 cut(s) 730
BseX3I CGGCCG 2 cut(s) 138, 217
BseXI GCAGC 7 cut(s) 82, 98, 177, 575, 579, 582, 934
BsgI GTGCAG 3 cut(s) 49, 556, 581
Bsh1236I CGCG 2 cut(s) 70, 143
Bsh1285I CGRYCG 2 cut(s) 141, 220
BshFI GGCC 6 cut(s) 140, 219, 314, 413, 473, 502
BshVI ATCGAT 1 cut(s) 912
BsiEI CGRYCG 2 cut(s) 141, 220
BsiHKAI GWGCWC 2 cut(s) 627, 730
BsiSI CCGG 2 cut(s) 276, 712
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 327, 711
BsmAI GTCTC 3 cut(s) 395, 495, 548
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 6 cut(s) 140, 219, 314, 413, 473, 502
Bsp1286I GDGCHC 2 cut(s) 627, 730
Bsp143I GATC 3 cut(s) 247, 427, 639
Bsp19I CCATGG 1 cut(s) 395
BspACI CCGC 6 cut(s) 50, 137, 141, 143, 261, 633
BspANI GGCC 6 cut(s) 140, 219, 314, 413, 473, 502
BspDI ATCGAT 1 cut(s) 912
BspFNI CGCG 2 cut(s) 70, 143
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 1 cut(s) 647
BspQI GCTCTTC 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 2 cut(s) 332, 482
BssECI CCNNGG 5 cut(s) 81, 141, 354, 395, 710
BssHII GCGCGC 1 cut(s) 68
BssMI GATC 3 cut(s) 247, 427, 639
BssNI GRCGYC 1 cut(s) 1030
BssT1I CCWWGG 2 cut(s) 354, 395
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 6 cut(s) 284, 365, 484, 559, 629, 961
Bst6I CTCTTC 2 cut(s) 80, 654
BstACI GRCGYC 1 cut(s) 1030
BstAPI GCANNNNNTGC 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 58
BstC8I GCNNGC 7 cut(s) 20, 24, 28, 32, 70, 145, 726
BstDEI CTNAG 1 cut(s) 611
BstDSI CCRYGG 3 cut(s) 81, 141, 395
BstEII GGTNACC 1 cut(s) 1061
BstF5I GGATG 3 cut(s) 139, 594, 641
BstFNI CGCG 2 cut(s) 70, 143
BstHHI GCGC 5 cut(s) 55, 70, 72, 112, 149
BstKTI GATC 3 cut(s) 250, 430, 642
BstMAI GTCTC 3 cut(s) 395, 495, 548
BstMBI GATC 3 cut(s) 247, 427, 639
BstMCI CGRYCG 2 cut(s) 141, 220
BstNI CCWGG 1 cut(s) 573
BstPI GGTNACC 1 cut(s) 1061
BstSCI CCNGG 2 cut(s) 571, 710
BstSLI GKGCMC 1 cut(s) 730
BstUI CGCG 2 cut(s) 70, 143
BstV1I GCAGC 7 cut(s) 82, 98, 177, 575, 579, 582, 934
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BstZI CGGCCG 2 cut(s) 138, 217
Bsu15I ATCGAT 1 cut(s) 912
BsuRI GGCC 6 cut(s) 140, 219, 314, 413, 473, 502
BsuTUI ATCGAT 1 cut(s) 912
BtgI CCRYGG 3 cut(s) 81, 141, 395
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 3 cut(s) 139, 594, 641
BtsI GCAGTG 3 cut(s) 202, 573, 598
BtsIMutI CAGTG 5 cut(s) 202, 564, 573, 598, 634
Cac8I GCNNGC 7 cut(s) 20, 24, 28, 32, 70, 145, 726
CaiI CAGNNNCTG 2 cut(s) 327, 572
CciI TCATGA 1 cut(s) 684
CciNI GCGGCCGC 1 cut(s) 138
CfoI GCGC 5 cut(s) 55, 70, 72, 112, 149
Cfr13I GGNCC 1 cut(s) 338
Cfr42I CCGCGG 1 cut(s) 144
ClaI ATCGAT 1 cut(s) 912
Csp6I GTAC 5 cut(s) 191, 366, 406, 718, 766
CviAII CATG 6 cut(s) 37, 150, 396, 443, 685, 694
CviQI GTAC 5 cut(s) 191, 366, 406, 718, 766
DdeI CTNAG 1 cut(s) 611
DpnI GATC 3 cut(s) 249, 429, 641
DpnII GATC 3 cut(s) 247, 427, 639
DrdI GACNNNNNNGTC 1 cut(s) 487
DseDI GACNNNNNNGTC 1 cut(s) 487
EaeI YGGCCR 2 cut(s) 138, 217
EagI CGGCCG 2 cut(s) 138, 217
Eam1104I CTCTTC 2 cut(s) 80, 654
EarI CTCTTC 2 cut(s) 80, 654
EciI GGCGGA 2 cut(s) 250, 648
EclXI CGGCCG 2 cut(s) 138, 217
Eco130I CCWWGG 2 cut(s) 354, 395
Eco32I GATATC 1 cut(s) 818
Eco47I GGWCC 1 cut(s) 338
Eco52I CGGCCG 2 cut(s) 138, 217
Eco57I CTGAAG 2 cut(s) 373, 1058
Eco91I GGTNACC 1 cut(s) 1061
EcoO65I GGTNACC 1 cut(s) 1061
EcoRII CCWGG 1 cut(s) 571
EcoRV GATATC 1 cut(s) 818
EcoT14I CCWWGG 2 cut(s) 354, 395
ErhI CCWWGG 2 cut(s) 354, 395
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 6 cut(s) 40, 153, 399, 446, 688, 697
FaqI GGGAC 1 cut(s) 351
FatI CATG 6 cut(s) 36, 149, 395, 442, 684, 693
FauI CCCGC 1 cut(s) 136
FbaI TGATCA 1 cut(s) 247
FokI GGATG 3 cut(s) 146, 601, 648
FspBI CTAG 1 cut(s) 653
GlaI GCGC 5 cut(s) 54, 69, 71, 111, 148
GsuI CTGGAG 4 cut(s) 416, 572, 882, 1032
HaeIII GGCC 6 cut(s) 140, 219, 314, 413, 473, 502
HapII CCGG 2 cut(s) 276, 712
HhaI GCGC 5 cut(s) 55, 70, 72, 112, 149
Hin1I GRCGYC 1 cut(s) 1030
Hin1II CATG 6 cut(s) 40, 153, 399, 446, 688, 697
Hin6I GCGC 5 cut(s) 53, 68, 70, 110, 147
HinP1I GCGC 5 cut(s) 53, 68, 70, 110, 147
HincII GTYRAC 1 cut(s) 1034
HindII GTYRAC 1 cut(s) 1034
HinfI GANTC 3 cut(s) 13, 618, 1043
HpaII CCGG 2 cut(s) 276, 712
HphI GGTGA 2 cut(s) 310, 974
Hpy166II GTNNAC 2 cut(s) 728, 1034
Hpy188I TCNGA 4 cut(s) 186, 392, 497, 1012
Hpy188III TCNNGA 6 cut(s) 224, 433, 520, 653, 685, 821
Hpy8I GTNNAC 2 cut(s) 728, 1034
HpyAV CCTTC 3 cut(s) 304, 700, 1033
HpyCH4III ACNGT 6 cut(s) 284, 365, 484, 559, 629, 961
HpyCH4IV ACGT 3 cut(s) 57, 404, 1030
HpyCH4V TGCA 6 cut(s) 30, 537, 598, 603, 679, 728
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 3 cut(s) 57, 404, 1030
Hsp92I GRCGYC 1 cut(s) 1030
Hsp92II CATG 6 cut(s) 40, 153, 399, 446, 688, 697
HspAI GCGC 5 cut(s) 53, 68, 70, 110, 147
Ksp22I TGATCA 1 cut(s) 247
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 3 cut(s) 247, 427, 639
LguI GCTCTTC 1 cut(s) 654
LmnI GCTCC 2 cut(s) 901, 1057
Lsp1109I GCAGC 7 cut(s) 82, 98, 177, 575, 579, 582, 934
LweI GCATC 5 cut(s) 124, 177, 448, 537, 579
MaeI CTAG 1 cut(s) 653
MaeII ACGT 3 cut(s) 57, 404, 1030
MaeIII GTNAC 3 cut(s) 875, 955, 1061
MalI GATC 3 cut(s) 249, 429, 641
MboI GATC 3 cut(s) 247, 427, 639
MboII GAAGA 6 cut(s) 67, 371, 508, 641, 668, 748
MfeI CAATTG 1 cut(s) 1056
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 2 cut(s) 627, 730
MluCI AATT 5 cut(s) 382, 834, 863, 934, 1056
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 793
MroXI GAANNNNTTC 2 cut(s) 386, 834
MslI CAYNNNNRTG 3 cut(s) 285, 990, 1023
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 276, 712
MspR9I CCNGG 2 cut(s) 573, 712
MunI CAATTG 1 cut(s) 1056
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 2 cut(s) 70, 143
NciI CCSGG 1 cut(s) 712
NcoI CCATGG 1 cut(s) 395
NdeII GATC 3 cut(s) 247, 427, 639
NlaIII CATG 6 cut(s) 40, 153, 399, 446, 688, 697
NlaIV GGNNCC 1 cut(s) 339
NmeAIII GCCGAG 2 cut(s) 195, 688
NotI GCGGCCGC 1 cut(s) 138
OliI CACNNNNGTG 1 cut(s) 285
PagI TCATGA 1 cut(s) 684
PauI GCGCGC 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 654
PdmI GAANNNNTTC 2 cut(s) 386, 834
PfeI GAWTC 2 cut(s) 618, 1043
PflMI CCANNNNNTGG 1 cut(s) 327
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 58
PsiI TTATAA 1 cut(s) 1023
Psp6I CCWGG 1 cut(s) 571
PspEI GGTNACC 1 cut(s) 1061
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 338
PsrI GAACNNNNNNTAC 2 cut(s) 726, 758
PstNI CAGNNNCTG 2 cut(s) 327, 572
PsuI RGATCY 1 cut(s) 427
PteI GCGCGC 1 cut(s) 68
RsaI GTAC 5 cut(s) 192, 367, 407, 719, 767
RsaNI GTAC 5 cut(s) 191, 366, 406, 718, 766
RseI CAYNNNNRTG 3 cut(s) 285, 990, 1023
SacII CCGCGG 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 654
Sau3AI GATC 3 cut(s) 247, 427, 639
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 573, 712
SduI GDGCHC 2 cut(s) 627, 730
SfaNI GCATC 5 cut(s) 124, 177, 448, 537, 579
Sfr303I CCGCGG 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 3 cut(s) 285, 990, 1023
SmlI CTYRAG 3 cut(s) 821, 857, 943
SmoI CTYRAG 3 cut(s) 821, 857, 943
Sse9I AATT 5 cut(s) 382, 834, 863, 934, 1056
SsiI CCGC 6 cut(s) 50, 137, 141, 143, 261, 633
SspMI CTAG 1 cut(s) 653
StyD4I CCNGG 2 cut(s) 571, 710
StyI CCWWGG 2 cut(s) 354, 395
TaaI ACNGT 6 cut(s) 284, 365, 484, 559, 629, 961
TaiI ACGT 3 cut(s) 60, 407, 1033
TaqI TCGA 3 cut(s) 422, 621, 912
TaqII GACCGA 1 cut(s) 355
TasI AATT 5 cut(s) 382, 834, 863, 934, 1056
TauI GCSGC 3 cut(s) 53, 140, 143
TfiI GAWTC 2 cut(s) 618, 1043
TscAI CASTG 5 cut(s) 202, 564, 573, 605, 634
TseI GCWGC 7 cut(s) 86, 95, 165, 563, 592, 595, 922
TspDTI ATGAA 1 cut(s) 682
TspRI CASTG 5 cut(s) 202, 564, 573, 605, 634
Van91I CCANNNNNTGG 1 cut(s) 327
VneI GTGCAC 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 652
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
XmnI GAANNNNTTC 2 cut(s) 386, 834
XspI CTAG 1 cut(s) 653
ZraI GACGTC 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.