pycom16g25550

Belongs to the alternative oxidase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
27525445 .. 27527846
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g25550.3

Sequence Viewer

Length: 1011 bp
ATGATGATGGCGAGCCGAAGACACGCGGCGAACTCGATGGCGGGCACAGTTCGGCTGTTCACCACTGCAAGCGCTACCAATAAGTCTCTGATGGCTGCTGCCGGTCATCTTCTTCCTCTGAATTATCTTCATAGCGGTTGTGGTGGTGTCCTAGTCCGGAGTGCTAGCACCAGTGCTGCAACTGTCGACGTGGCTGCAGAGGGTCATAACACTACGGCCCCTTCAACTGCTGGCCACGGCGGTGGTAAGGATGATGAGAAGGGGATCACCAGCTACTGGGGTGTGGGACCCACCAAAGTCACCAAGCAAGATGGAACCGAATGGAAGTGGACTTGCTTTAGGCCATGGGAGGCGTACAAAGCGGACGTCTCGATAGATCTGAAGAAGCATCACGTGCCAACGACTTTGTTGGACAGAATGGCTTACTGGACCGTCAAATCTCTCCGATGGCCTACTGATCTATTCTTCCAGAGGCGGTATGGGTGCCGAGCAATGATGCTAGAAACAGTGGCAGCAGTTCCCGGAATGGTAGGAGGGATGTTGCTGCACTGCAAGTCCCTACGGCGGTTCGAGCACAGCGGAGGGTGGATCAAAGCTCTGCTGGAAGAAGCCGAGAACGAGCGAATGCACCTCATGACATTCATGGAAGTAGCCAACCCCAAGTGGTACGAGCGTGCCCTCGTCTTTGCGGTTCAAGGCGTCTTCTTCAACGCCTACTTCGTAGGGTATATGGCTTCCCCGAAATTCGCTCATCGAATGGTTGGGTACCTTGAGGAGGAAGCAATCCACTCGTACACTGAGTTCCTCAAGGAGCTGGATAAAGGGAACATAGAGAATGTGCCAGCTCCGGCGATTGCCATTGATTACTGGCAGCTGCCACCTGACTCGACTCTGAGAGACGTTGTCACGGTTGTTAGGGCGGATGAGGCACACCACCGCGATGTCAATCACTTTGCATCGGTAATAGGGATTAACTTGTTTAAATCAATTCGGTTGTTCTTGCTTGATTAG

Protein Analysis

337

Amino Acids

37.52

Weight (kDa)

8.27

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 369
Acc65I GGTACC 1 cut(s) 765
AccB1I GGYRCC 2 cut(s) 483, 765
AccB7I CCANNNNNTGG 1 cut(s) 276
AccI GTMKAC 1 cut(s) 186
AccII CGCG 2 cut(s) 26, 939
AccIII TCCGGA 1 cut(s) 156
AclWI GGATC 2 cut(s) 272, 596
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 1 cut(s) 743
AcuI CTGAAG 1 cut(s) 401
AcvI CACGTG 1 cut(s) 394
AcyI GRCGYC 2 cut(s) 366, 699
AfaI GTAC 4 cut(s) 356, 668, 767, 794
AfeI AGCGCT 1 cut(s) 73
AfiI CCNNNNNNNGG 3 cut(s) 276, 564, 775
AgsI TTSAA 3 cut(s) 225, 695, 709
AjiI CACGTC 1 cut(s) 190
AleI CACNNNNGTG 1 cut(s) 240
AluBI AGCT 5 cut(s) 273, 596, 814, 845, 874
AluI AGCT 5 cut(s) 273, 596, 814, 845, 874
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 3 cut(s) 90, 373, 891
AlwI GGATC 2 cut(s) 272, 596
AlwNI CAGNNNCTG 1 cut(s) 276
Aor13HI TCCGGA 1 cut(s) 156
Aor51HI AGCGCT 1 cut(s) 73
AoxI GGCC 4 cut(s) 216, 232, 341, 449
ApeKI GCWGC 8 cut(s) 95, 98, 176, 194, 512, 544, 871, 874
ApoI RAATTY 1 cut(s) 743
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
Asp718I GGTACC 1 cut(s) 765
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 217, 287, 429
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 3 cut(s) 52, 259, 292
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 2 cut(s) 287, 429
BaeGI GKGCMC 2 cut(s) 47, 679
BaeI ACNNNNGTAYC 2 cut(s) 658, 691
BalI TGGCCA 1 cut(s) 234
BanI GGYRCC 2 cut(s) 483, 765
BbrPI CACGTG 1 cut(s) 394
BbsI GAAGAC 2 cut(s) 25, 694
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 8 cut(s) 82, 85, 163, 181, 524, 531, 861, 883
BccI CCATC 4 cut(s) 31, 85, 305, 441
BceAI ACGGC 3 cut(s) 231, 253, 578
BcgI CGANNNNNNTGC 4 cut(s) 176, 210, 771, 805
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 3 cut(s) 90, 373, 891
BfaI CTAG 3 cut(s) 152, 165, 500
BfmI CTRYAG 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 75
BglII AGATCT 1 cut(s) 376
BisI GCNGC 9 cut(s) 27, 96, 99, 177, 195, 513, 545, 872, 875
BlsI GCNGC 9 cut(s) 28, 97, 100, 178, 196, 514, 546, 873, 876
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 2 cut(s) 287, 429
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 217, 287, 429
BmiI GGNNCC 6 cut(s) 219, 288, 289, 316, 485, 767
BmrFI CCNGG 1 cut(s) 522
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 3 cut(s) 397, 486, 965
BmtI GCTAGC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 2 cut(s) 25, 694
BpuEI CTTGAG 2 cut(s) 791, 791
BpuMI CCSGG 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 945
BsaHI GRCGYC 2 cut(s) 366, 699
BsaJI CCNNGG 2 cut(s) 235, 344
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 564, 775
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 4 cut(s) 171, 281, 431, 872
Bse3DI GCAATG 1 cut(s) 498
Bse8I GATNNNNATC 1 cut(s) 945
BseAI TCCGGA 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 235, 344
BseGI GGATG 3 cut(s) 256, 543, 928
BseJI GATNNNNATC 1 cut(s) 945
BseLI CCNNNNNNNGG 3 cut(s) 276, 564, 775
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 2 cut(s) 789, 884
BseNI ACTGG 4 cut(s) 171, 281, 431, 872
BseRI GAGGAG 1 cut(s) 788
BseSI GKGCMC 2 cut(s) 47, 679
BseXI GCAGC 8 cut(s) 82, 85, 163, 181, 524, 531, 861, 883
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 2 cut(s) 26, 939
BshFI GGCC 4 cut(s) 218, 234, 343, 451
BshNI GGYRCC 2 cut(s) 483, 765
BsiHKAI GWGCWC 1 cut(s) 576
BsiSI CCGG 4 cut(s) 102, 157, 522, 848
BslFI GGGAC 2 cut(s) 300, 541
BslI CCNNNNNNNGG 3 cut(s) 276, 564, 775
BsmAI GTCTC 3 cut(s) 90, 373, 891
BsmBI CGTCTC 2 cut(s) 373, 891
BsmFI GGGAC 2 cut(s) 300, 541
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 4 cut(s) 218, 234, 343, 451
Bsp1286I GDGCHC 3 cut(s) 47, 576, 679
Bsp13I TCCGGA 1 cut(s) 156
Bsp143I GATC 4 cut(s) 264, 376, 457, 588
Bsp19I CCATGG 1 cut(s) 344
BspANI GGCC 4 cut(s) 218, 234, 343, 451
BspCNI CTCAG 2 cut(s) 790, 885
BspEI TCCGGA 1 cut(s) 156
BspFNI CGCG 2 cut(s) 26, 939
BspHI TCATGA 1 cut(s) 633
BspLI GGNNCC 6 cut(s) 219, 288, 289, 316, 485, 767
BspMAI CTGCAG 1 cut(s) 199
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 2 cut(s) 272, 596
BspT107I GGYRCC 2 cut(s) 483, 765
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 4 cut(s) 171, 281, 431, 872
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 235, 344
BssMI GATC 4 cut(s) 264, 376, 457, 588
BssNI GRCGYC 2 cut(s) 366, 699
BssT1I CCWWGG 1 cut(s) 344
Bst4CI ACNGT 5 cut(s) 49, 184, 433, 508, 910
BstACI GRCGYC 2 cut(s) 366, 699
BstAPI GCANNNNNTGC 1 cut(s) 394
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 7 cut(s) 13, 43, 70, 166, 232, 675, 843
BstDEI CTNAG 2 cut(s) 798, 893
BstDSI CCRYGG 2 cut(s) 235, 344
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 3 cut(s) 256, 543, 928
BstFNI CGCG 2 cut(s) 26, 939
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 4 cut(s) 267, 379, 460, 591
BstMAI GTCTC 3 cut(s) 90, 373, 891
BstMBI GATC 4 cut(s) 264, 376, 457, 588
BstMWI GCNNNNNNNGC 4 cut(s) 359, 394, 571, 926
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 1 cut(s) 195
BstSLI GKGCMC 2 cut(s) 47, 679
BstUI CGCG 2 cut(s) 26, 939
BstV1I GCAGC 8 cut(s) 82, 85, 163, 181, 524, 531, 861, 883
BstV2I GAAGAC 2 cut(s) 25, 694
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 4 cut(s) 218, 234, 343, 451
BtgI CCRYGG 2 cut(s) 235, 344
BtgZI GCGATG 1 cut(s) 954
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 256, 543, 928
BtsI GCAGTG 2 cut(s) 63, 547
BtsIMutI CAGTG 5 cut(s) 63, 178, 513, 547, 795
Cac8I GCNNGC 7 cut(s) 13, 43, 70, 166, 232, 675, 843
CaiI CAGNNNCTG 1 cut(s) 276
CciI TCATGA 1 cut(s) 633
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 3 cut(s) 217, 287, 429
CseI GACGC 1 cut(s) 688
Csp6I GTAC 4 cut(s) 355, 667, 766, 793
CviAII CATG 3 cut(s) 345, 634, 643
CviQI GTAC 4 cut(s) 355, 667, 766, 793
DdeI CTNAG 2 cut(s) 798, 893
DpnI GATC 4 cut(s) 266, 378, 459, 590
DpnII GATC 4 cut(s) 264, 376, 457, 588
DraI TTTAAA 1 cut(s) 982
EaeI YGGCCR 1 cut(s) 232
EciI GGCGGA 1 cut(s) 935
Eco130I CCWWGG 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 287, 429
Eco47III AGCGCT 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 401
Eco72I CACGTG 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoO109I RGGNCCY 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
Esp3I CGTCTC 2 cut(s) 373, 891
FaeI CATG 3 cut(s) 348, 637, 646
FaiI YATR 9 cut(s) 132, 207, 346, 480, 635, 644, 729, 731, 830
FaqI GGGAC 2 cut(s) 300, 541
FatI CATG 3 cut(s) 344, 633, 642
FauI CCCGC 1 cut(s) 34
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 9 cut(s) 27, 96, 99, 177, 195, 513, 545, 872, 875
FokI GGATG 3 cut(s) 263, 550, 935
Fsp4HI GCNGC 9 cut(s) 27, 96, 99, 177, 195, 513, 545, 872, 875
FspBI CTAG 3 cut(s) 152, 165, 500
GlaI GCGC 1 cut(s) 73
GluI GCNGC 9 cut(s) 27, 96, 99, 177, 195, 513, 545, 872, 875
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 4 cut(s) 218, 234, 343, 451
HapII CCGG 4 cut(s) 102, 157, 522, 848
HgaI GACGC 1 cut(s) 688
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 2 cut(s) 366, 699
Hin1II CATG 3 cut(s) 348, 637, 646
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 884, 889
HpaII CCGG 4 cut(s) 102, 157, 522, 848
HphI GGTGA 3 cut(s) 52, 259, 292
Hpy166II GTNNAC 4 cut(s) 60, 187, 330, 795
Hpy188I TCNGA 5 cut(s) 90, 120, 381, 446, 894
Hpy188III TCNNGA 4 cut(s) 157, 370, 469, 634
Hpy8I GTNNAC 4 cut(s) 60, 187, 330, 795
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 231, 253
HpyCH4III ACNGT 5 cut(s) 49, 184, 433, 508, 910
HpyCH4IV ACGT 4 cut(s) 189, 366, 393, 900
HpyCH4V TGCA 7 cut(s) 68, 179, 197, 547, 552, 628, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 359, 394, 571, 926
HpyF3I CTNAG 2 cut(s) 798, 893
HpySE526I ACGT 4 cut(s) 189, 366, 393, 900
Hsp92I GRCGYC 2 cut(s) 366, 699
Hsp92II CATG 3 cut(s) 348, 637, 646
HspAI GCGC 1 cut(s) 72
KflI GGGWCCC 1 cut(s) 287
Kpn2I TCCGGA 1 cut(s) 156
KpnI GGTACC 1 cut(s) 769
Kzo9I GATC 4 cut(s) 264, 376, 457, 588
LmnI GCTCC 2 cut(s) 811, 850
Lsp1109I GCAGC 8 cut(s) 82, 85, 163, 181, 524, 531, 861, 883
LweI GCATC 3 cut(s) 397, 486, 965
MaeI CTAG 3 cut(s) 152, 165, 500
MaeII ACGT 4 cut(s) 189, 366, 393, 900
MaeIII GTNAC 2 cut(s) 298, 904
MalI GATC 4 cut(s) 266, 378, 459, 590
MboI GATC 4 cut(s) 264, 376, 457, 588
MboII GAAGA 9 cut(s) 30, 101, 104, 119, 394, 457, 617, 694, 697
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 3 cut(s) 47, 576, 679
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 3 cut(s) 121, 743, 987
MluNI TGGCCA 1 cut(s) 234
MlyI GAGTC 2 cut(s) 878, 883
MmeI TCCRAC 1 cut(s) 390
Mox20I TGGCCA 1 cut(s) 234
MroI TCCGGA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 234
MseI TTAA 2 cut(s) 972, 981
MslI CAYNNNNRTG 2 cut(s) 240, 939
Msp20I TGGCCA 1 cut(s) 234
MspA1I CMGCKG 2 cut(s) 579, 874
MspI CCGG 4 cut(s) 102, 157, 522, 848
MspR9I CCNGG 1 cut(s) 522
Mva1269I GAATGC 1 cut(s) 630
MvnI CGCG 2 cut(s) 26, 939
MwoI GCNNNNNNNGC 4 cut(s) 359, 394, 571, 926
NciI CCSGG 1 cut(s) 522
NcoI CCATGG 1 cut(s) 344
NdeII GATC 4 cut(s) 264, 376, 457, 588
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 3 cut(s) 348, 637, 646
NlaIV GGNNCC 6 cut(s) 219, 288, 289, 316, 485, 767
NmeAIII GCCGAG 2 cut(s) 512, 637
NmuCI GTSAC 2 cut(s) 298, 904
OliI CACNNNNGTG 1 cut(s) 240
PagI TCATGA 1 cut(s) 633
PcsI WCGNNNNNNNCGW 1 cut(s) 717
PctI GAATGC 1 cut(s) 630
PflFI GACNNNGTC 1 cut(s) 902
PflMI CCANNNNNTGG 1 cut(s) 276
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 9 cut(s) 28, 97, 100, 178, 196, 514, 546, 873, 876
PleI GAGTC 2 cut(s) 878, 883
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
PpsI GAGTC 2 cut(s) 878, 883
Ppu21I YACGTR 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
PspCI CACGTG 1 cut(s) 394
PspN4I GGNNCC 6 cut(s) 219, 288, 289, 316, 485, 767
PspPI GGNCC 3 cut(s) 217, 287, 429
PspPPI RGGWCCY 1 cut(s) 287
PsrI GAACNNNNNNTAC 2 cut(s) 785, 817
PstI CTGCAG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 276
PsuI RGATCY 1 cut(s) 376
PsyI GACNNNGTC 1 cut(s) 902
PvuII CAGCTG 1 cut(s) 874
RsaI GTAC 4 cut(s) 356, 668, 767, 794
RsaNI GTAC 4 cut(s) 355, 667, 766, 793
RseI CAYNNNNRTG 2 cut(s) 240, 939
SalI GTCGAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 972, 981
SatI GCNGC 9 cut(s) 27, 96, 99, 177, 195, 513, 545, 872, 875
Sau3AI GATC 4 cut(s) 264, 376, 457, 588
Sau96I GGNCC 3 cut(s) 217, 287, 429
SchI GAGTC 2 cut(s) 878, 883
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 3 cut(s) 47, 576, 679
SfaNI GCATC 3 cut(s) 397, 486, 965
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 2 cut(s) 287, 429
SmiMI CAYNNNNRTG 2 cut(s) 240, 939
SmlI CTYRAG 2 cut(s) 770, 806
SmoI CTYRAG 2 cut(s) 770, 806
Sse9I AATT 3 cut(s) 121, 743, 987
SspMI CTAG 3 cut(s) 152, 165, 500
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 5 cut(s) 49, 184, 433, 508, 910
TaiI ACGT 4 cut(s) 192, 369, 396, 903
TaqI TCGA 6 cut(s) 35, 186, 371, 570, 754, 887
TasI AATT 3 cut(s) 121, 743, 987
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 972, 981
Tru9I TTAA 2 cut(s) 972, 981
TscAI CASTG 5 cut(s) 70, 178, 513, 554, 802
TseFI GTSAC 2 cut(s) 298, 904
TseI GCWGC 8 cut(s) 95, 98, 176, 194, 512, 544, 871, 874
Tsp45I GTSAC 2 cut(s) 298, 904
TspDTI ATGAA 2 cut(s) 119, 631
TspRI CASTG 5 cut(s) 70, 178, 513, 554, 802
Tth111I GACNNNGTC 1 cut(s) 902
Van91I CCANNNNNTGG 1 cut(s) 276
VpaK11BI GGWCC 2 cut(s) 287, 429
XagI CCTNNNNNAGG 1 cut(s) 773
XapI RAATTY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 3 cut(s) 152, 165, 500
ZraI GACGTC 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.