Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006091

Physical Location & Seq

Genomic Coordinates Reverse (-)

30357712 .. 30358203

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG296100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAAGTCGCCAAGCCCCGGTGGTACGAGCGTGCACTTGTATTTGCTGTTCAAGGTGTTTTCTTCAATGCGTACTTCTTGGGATATATGATTTCACCCAAGTTTGCTCATAGAATGGTTGGATATCTTGAGGAGGAAGCAATTCACTCATATACCGAGTTCCTCAAGGAATTAGACAAAGGTAACATTGAGAATGTTCCAGCTCCAGCTATTGCTATTGATTATTGGCAGCTACCTTCCAATTCCACCTTGAGAGATGTTGTTACAGTTGTTAGGGCAGACGAGGCTCACCACCGAGATGTCAATCACTTCGCTTCGGGCATACATTATAATGGACGTGAACTGAAGGAATCTCCAGCTCCAATTGGTTACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

125

Amino Acids

14.37

Weight (kDa)

5.94

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AOX	PF01786	1 - 104	7.2e-46	Alternative oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32350 AT1G32350 AT3G22360 AT3G22370 AT3G27620 AT5G63625 AT5G64687 AT5G64687
fragaria_vesca	FvH4_5g24160
malus_domestica	MD00G1148200.v1.1
prunus_persica	Prupe.5G018700_v2.0.a1
pyrus_communis	pycom16g25550
rosa_chinensis	RchiOBHm_Chr7g0213861 RchiOBHm_Chr7g0213931
rosa_laevigata	RLG00000002775
rosa_multiflora	Rmu_co8428533.1_g000001 Rmu_sc0000328.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245650 Rroxscaffold_3G00245670
rosa_rugosa	Rorug07G0144800
rosa_samantha	Rh7AG277100 Rh7AG277800 Rh7BG271200 Rh7CG296100 Rh7CG296900 Rh7DG283500
rosa_wichuraiana	Rw7G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	26, 74
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	53, 67
AjiI	CACGTC	1 cut(s)	338
AluBI	AGCT	4 cut(s)	203, 209, 232, 359
AluI	AGCT	4 cut(s)	203, 209, 232, 359
Alw21I	GWGCWC	1 cut(s)	37
Alw44I	GTGCAC	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	87, 281
BaeGI	GKGCMC	1 cut(s)	37
BaeI	ACNNNNGTAYC	2 cut(s)	16, 49
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	19
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	189, 339
BpuEI	CTTGAG	3 cut(s)	149, 149, 271
BpuMI	CCSGG	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	17
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	368
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	17
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	25, 73
CviJI	RGCY	6 cut(s)	16, 203, 209, 232, 287, 359
CviKI_1	RGCY	6 cut(s)	16, 203, 209, 232, 287, 359
CviQI	GTAC	2 cut(s)	25, 73
Eco32I	GATATC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	365
Eco91I	GGTNACC	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	125
FaiI	YATR	7 cut(s)	87, 89, 111, 151, 153, 323, 330
Fnu4HI	GCNGC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
GsuI	CTGGAG	2 cut(s)	189, 339
HapII	CCGG	1 cut(s)	19
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	2 cut(s)	87, 281
Hpy166II	GTNNAC	2 cut(s)	35, 341
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	35, 341
HpyAV	CCTTC	2 cut(s)	246, 340
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	208, 364
LpnPI	CCDG	4 cut(s)	32, 213, 219, 369
Lsp1109I	GCAGC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	3 cut(s)	182, 262, 368
MboII	GAAGA	1 cut(s)	55
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	4 cut(s)	141, 170, 241, 363
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	4 cut(s)	124, 127, 173, 277
MroXI	GAANNNNTTC	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	297, 330
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	330
PspEI	GGTNACC	1 cut(s)	368
PsrI	GAACNNNNNNTAC	2 cut(s)	33, 65
RsaI	GTAC	2 cut(s)	26, 74
RsaNI	GTAC	2 cut(s)	25, 73
RseI	CAYNNNNRTG	2 cut(s)	297, 330
SatI	GCNGC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	9 cut(s)	58, 184, 205, 211, 234, 238, 251, 340, 361
SmiMI	CAYNNNNRTG	2 cut(s)	297, 330
SmlI	CTYRAG	3 cut(s)	128, 164, 250
SmoI	CTYRAG	3 cut(s)	128, 164, 250
Sse9I	AATT	4 cut(s)	141, 170, 241, 363
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	340
TasI	AATT	4 cut(s)	141, 170, 241, 363
TfiI	GAWTC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.