Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Reverse (-)

8973520 .. 8974867

Gene Structure 1348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24605.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAGATGTACCCAAAATCTGACTCAGACGTCACAAGCCTCGACCTATCATCACCAAAACGTCCTACTTACTACGTTCAAAGCCCATCACGTGACTCCGACAAGTCTTCCTCGGTGGCACTGACTACTCATCAAACCACTCCCACAGAGTCGCCGTCACACCCATCAATTGCTAGCCGGGTATCCAATGGCGGTGGTGGCGGTTTCCGGTGGAAGGGACGGAGGAAATATCACGGCGGGATATGGTGGCCGGCTGATAAGGAGGAAGGTGGTGATGGACGGTACGAGGATCTTTATGAGGACAACAGAGGAGTCTCCATTGTTACTTGTAGACTTATTTTGGGAGTTGTTGCGACATTGAGTATCTTTTTTCTTCTTTGTTCTGTTCTCTTTGGTGCTTCTCAATCTTCTCCTCCAATCGTCTACATCAAGGGTGTGAATGTGAGAAGTTTTTACTACGGAGAAGGTTCAGACAATACAGGAGTTCCAACAAAGATCATGAACGTTAAATGTTCAGTGGTGATCACAACACACAATCCTTCTACATTATTCGGCATCCATGTTAGCTCCACTGCCGTCAGCCTCATATACTCTCGTCAATTCACACTTGCGAATGCGCGGCTGAAGAGTTATCACCAACCAAAACAAAGCAACCACACATCTAGGATCAACCTTATTGGCTCCAAGGTTCCACTATATGGAGCAGGAGCCGAGTTAGTTGCTTCGGACAACAGTGGTGGAGTTCCCGTGAAGTTAGAGTTCGAGATCCGATCACGAGCCAATATTGTTGGAAACTTAGTCAAGTCTAGGCATAGGAAACACCTCTCTTGCTTCTTTTTTATTTCCTCCTACAACACCACCTTTGTAAAATTTACCCACAAAACTTGTATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

298

Amino Acids

32.72

Weight (kDa)

9.67

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AatII	GACGTC	1 cut(s)	33
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccI	GTMKAC	2 cut(s)	331, 423
AccII	CGCG	1 cut(s)	619
AciI	CCGC	4 cut(s)	192, 201, 237, 619
AclI	AACGTT	1 cut(s)	504
AclWI	GGATC	3 cut(s)	297, 674, 760
AcoI	YGGCCR	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	869
AcuI	CTGAAG	1 cut(s)	644
AcvI	CACGTG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	11, 284
AfiI	CCNNNNNNNGG	2 cut(s)	214, 698
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	1 cut(s)	567
AluI	AGCT	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	3 cut(s)	297, 674, 760
AoxI	GGCC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	619
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	4 cut(s)	45, 284, 532, 626
AsuNHI	GCTAGC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	774
BbrPI	CACGTG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	99
BccI	CCATC	3 cut(s)	94, 172, 269
BceAI	ACGGC	3 cut(s)	139, 250, 560
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BciVI	GTATCC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	3 cut(s)	174, 663, 807
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	620
BlsI	GCNGC	1 cut(s)	621
Bme1390I	CCNGG	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	682, 690, 709
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	564
BmtI	GCTAGC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	111, 684
BsaWI	WCCGGW	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 698
Bse118I	RCCGGY	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	111, 684
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	2 cut(s)	214, 698
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	324, 402
Bsh1236I	CGCG	1 cut(s)	619
BshFI	GGCC	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	178, 208, 251
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	214, 698
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	6 cut(s)	289, 495, 522, 666, 765, 770
BspACI	CCGC	4 cut(s)	192, 201, 237, 619
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	619
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	682, 690, 709
BspOI	GCTAGC	1 cut(s)	177
BspPI	GGATC	3 cut(s)	297, 674, 760
BsrFI	RCCGGY	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	111, 684
BssMI	GATC	6 cut(s)	289, 495, 522, 666, 765, 770
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	774
BssT1I	CCWWGG	1 cut(s)	684
Bst2BI	CACGAG	1 cut(s)	774
Bst4CI	ACNGT	2 cut(s)	282, 734
Bst6I	CTCTTC	1 cut(s)	620
BstACI	GRCGYC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	175, 252
BstDEI	CTNAG	2 cut(s)	25, 796
BstF5I	GGATG	1 cut(s)	555
BstFNI	CGCG	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	6 cut(s)	292, 498, 525, 669, 768, 773
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	6 cut(s)	289, 495, 522, 666, 765, 770
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	619
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	289, 765
BstYI	RGATCY	2 cut(s)	289, 765
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	555
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	4 cut(s)	119, 522, 570, 739
Cac8I	GCNNGC	2 cut(s)	175, 252
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	1 cut(s)	619
Cfr10I	RCCGGY	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	10, 283
CspCI	CAANNNNNGTGG	5 cut(s)	175, 210, 718, 753, 866
CviAII	CATG	2 cut(s)	499, 560
CviQI	GTAC	2 cut(s)	10, 283
DdeI	CTNAG	2 cut(s)	25, 796
DpnI	GATC	6 cut(s)	291, 497, 524, 668, 767, 772
DpnII	GATC	6 cut(s)	289, 495, 522, 666, 765, 770
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	684
Eco57I	CTGAAG	1 cut(s)	644
Eco72I	CACGTG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	2 cut(s)	502, 563
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	498, 559
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	2 cut(s)	331, 423
Fnu4HI	GCNGC	1 cut(s)	620
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	1 cut(s)	620
FspBI	CTAG	3 cut(s)	174, 663, 807
GlaI	GCGC	1 cut(s)	618
GluI	GCNGC	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	3 cut(s)	178, 208, 251
HhaI	GCGC	1 cut(s)	619
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	502, 563
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HinfI	GANTC	4 cut(s)	23, 95, 149, 312
HpaII	CCGG	3 cut(s)	178, 208, 251
HphI	GGTGA	4 cut(s)	45, 284, 532, 626
Hpy166II	GTNNAC	2 cut(s)	332, 424
Hpy188I	TCNGA	6 cut(s)	22, 28, 100, 472, 727, 770
Hpy188III	TCNNGA	3 cut(s)	499, 763, 774
Hpy8I	GTNNAC	2 cut(s)	332, 424
HpyAV	CCTTC	4 cut(s)	208, 260, 458, 549
HpyCH4III	ACNGT	2 cut(s)	282, 734
HpyCH4IV	ACGT	5 cut(s)	30, 61, 75, 91, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	2 cut(s)	25, 796
HpySE526I	ACGT	5 cut(s)	30, 61, 75, 91, 504
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	502, 563
HspAI	GCGC	1 cut(s)	617
KroI	GCCGGC	1 cut(s)	250
KroNI	GCCGGC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	6 cut(s)	289, 495, 522, 666, 765, 770
LmnI	GCTCC	4 cut(s)	572, 686, 701, 707
LpnPI	CCDG	5 cut(s)	191, 221, 264, 465, 690
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	3 cut(s)	174, 663, 807
MaeII	ACGT	5 cut(s)	30, 61, 75, 91, 504
MaeIII	GTNAC	4 cut(s)	31, 92, 156, 322
MalI	GATC	6 cut(s)	291, 497, 524, 668, 767, 772
MboI	GATC	6 cut(s)	289, 495, 522, 666, 765, 770
MboII	GAAGA	5 cut(s)	16, 99, 365, 399, 637
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	2 cut(s)	289, 765
MluCI	AATT	3 cut(s)	168, 599, 869
MlyI	GAGTC	4 cut(s)	17, 89, 158, 321
MmeI	TCCRAC	3 cut(s)	123, 512, 769
MroNI	GCCGGC	1 cut(s)	250
MseI	TTAA	1 cut(s)	507
MspI	CCGG	3 cut(s)	178, 208, 251
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	619
MvnI	CGCG	1 cut(s)	619
MwoI	GCNNNNNNNGC	1 cut(s)	198
NaeI	GCCGGC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	6 cut(s)	289, 495, 522, 666, 765, 770
NgoMIV	GCCGGC	1 cut(s)	250
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	502, 563
NlaIV	GGNNCC	3 cut(s)	682, 690, 709
NmeAIII	GCCGAG	1 cut(s)	736
NmuCI	GTSAC	3 cut(s)	31, 92, 156
PagI	TCATGA	1 cut(s)	498
PctI	GAATGC	1 cut(s)	619
PdiI	GCCGGC	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	698
PkrI	GCNGC	1 cut(s)	621
PleI	GAGTC	4 cut(s)	17, 89, 157, 320
PmaCI	CACGTG	1 cut(s)	92
PmlI	CACGTG	1 cut(s)	92
PpsI	GAGTC	4 cut(s)	17, 89, 157, 320
Ppu21I	YACGTR	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	504
PspCI	CACGTG	1 cut(s)	92
PspN4I	GGNNCC	3 cut(s)	682, 690, 709
PsuI	RGATCY	2 cut(s)	289, 765
RsaI	GTAC	2 cut(s)	11, 284
RsaNI	GTAC	2 cut(s)	10, 283
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	1 cut(s)	620
Sau3AI	GATC	6 cut(s)	289, 495, 522, 666, 765, 770
SchI	GAGTC	4 cut(s)	17, 89, 158, 321
ScrFI	CCNGG	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	564
Sse9I	AATT	3 cut(s)	168, 599, 869
SsiI	CCGC	4 cut(s)	192, 201, 237, 619
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	3 cut(s)	174, 663, 807
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	2 cut(s)	282, 734
TaiI	ACGT	5 cut(s)	33, 64, 78, 94, 507
TaqI	TCGA	2 cut(s)	42, 762
TasI	AATT	3 cut(s)	168, 599, 869
TauI	GCSGC	1 cut(s)	622
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	4 cut(s)	126, 522, 577, 739
TseFI	GTSAC	3 cut(s)	31, 92, 156
Tsp45I	GTSAC	3 cut(s)	31, 92, 156
TspDTI	ATGAA	3 cut(s)	17, 515, 882
TspGWI	ACGGA	2 cut(s)	235, 474
TspRI	CASTG	4 cut(s)	126, 522, 577, 739
Van91I	CCANNNNNTGG	1 cut(s)	698
XapI	RAATTY	1 cut(s)	869
XmiI	GTMKAC	2 cut(s)	331, 423
XspI	CTAG	3 cut(s)	174, 663, 807
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.