Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Reverse (-)

20333857 .. 20336946

Gene Structure 3090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G232800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGATGCACGCAAAATCTGACTCGGATGTGACCAGCTTGGCACCTTCATCACCAAGATCACCAAAGCGACCTGTTTACTACGTTCAAAGCCCGTCCAGGGACTCCAACGATGGCGATAAATCGTCCACAATGCAAGCCACGCCAGCCTTCAACAGTCCCATGGAGAGCCCATCACACCCTTCTTATGGCCGGCACTCGAGGGCATCATCTGCCAGTCGGGTTTCGGGTACCTTTCGGTCCTCTTCGGGTCAGAAAGGGACCCGGAAGCGCAACGATAAGGGGTGGCCTGAGTGCAATGTGATTGAAGAAGAAGGTGACTATGGTGGGTTTTATAAAGATAAGGGAATTTCTAGAAGGTGCCAGATTTGGATTGCTCTGTTTGGGTTTGTTGTGATTTTCTCCATCTTCTGCTTGATTCTTTGGGGTGCTAGCAGGCCTTACAAAGCTCGGATTGCTGTTAAGAGCTTCGCTGTGCATAATTTTTATTTCGGGGAAGGATCAGACACAACTGGTGTGCCTTCAAAGATGCTGACAATGAATTGTTCAGTGAAGATGAGTGTGTACAACCCTGCTACGTTTTTTGGTATTCATGTGAGCTCAACACCAATTAACCTTATGTATTCAGAGATTGCAGTTGCAACTGGCCAGTTGAAGAAATACTATCAACCAAGAAAGAGCTACCGGAATGTGACTGTGAACCTCCAAGGGATCAAGGTTCCTTTATATGGGGCTGGGGCAAGCTTAGCAGTCTCTGATAACAGTGGAGGAGTTCCGATGATGCTGATGTTTGAAGTCCGGTCACGAGGTAATGTGGTGGGGAAGTTGGTGAGATCAAAGCACCAAAGGCACATATCTTGCTCCATGGAAATCAACTCTCATAATAGCAAACCCATCAAGTTAAAAACGAGTTCATGTACCTACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

309

Amino Acids

33.98

Weight (kDa)

9.88

Isoelectric Point (pI)

63.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	3 cut(s)	40, 227, 357
AclWI	GGATC	2 cut(s)	505, 716
AcoI	YGGCCR	2 cut(s)	187, 643
AcsI	RAATTY	1 cut(s)	345
AfaI	GTAC	3 cut(s)	229, 563, 916
AfiI	CCNNNNNNNGG	3 cut(s)	97, 185, 725
AgsI	TTSAA	6 cut(s)	86, 151, 305, 522, 652, 791
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	6 cut(s)	36, 446, 465, 597, 678, 741
AluI	AGCT	6 cut(s)	36, 446, 465, 597, 678, 741
Alw21I	GWGCWC	1 cut(s)	599
Alw26I	GTCTC	1 cut(s)	754
AlwI	GGATC	2 cut(s)	505, 716
AlwNI	CAGNNNCTG	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	4 cut(s)	187, 284, 434, 643
ApoI	RAATTY	1 cut(s)	345
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	237, 258
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	4 cut(s)	42, 51, 326, 838
AsuNHI	GCTAGC	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	237, 258
BalI	TGGCCA	1 cut(s)	645
BanI	GGYRCC	3 cut(s)	40, 227, 357
BanII	GRGCYC	2 cut(s)	170, 599
BauI	CACGAG	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	599
BccI	CCATC	4 cut(s)	104, 178, 410, 899
BciT130I	CCWGG	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	2 cut(s)	351, 429
BlpI	GCTNAGC	1 cut(s)	742
Bme1390I	CCNGG	2 cut(s)	97, 262
Bme18I	GGWCC	2 cut(s)	237, 258
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	237, 258
BmiI	GGNNCC	6 cut(s)	42, 229, 259, 260, 359, 717
BmrFI	CCNGG	2 cut(s)	97, 262
BmsI	GCATC	3 cut(s)	212, 516, 768
BmtI	GCTAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	742
BpuMI	CCSGG	1 cut(s)	262
BsaJI	CCNNGG	4 cut(s)	96, 159, 703, 861
BsaWI	WCCGGW	2 cut(s)	681, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 185, 725
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	4 cut(s)	213, 514, 646, 646
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	4 cut(s)	96, 159, 703, 861
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	3 cut(s)	97, 185, 725
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	4 cut(s)	213, 514, 646, 646
BseRI	GAGGAG	1 cut(s)	780
BseYI	CCCAGC	1 cut(s)	731
BshFI	GGCC	4 cut(s)	189, 286, 436, 645
BshNI	GGYRCC	3 cut(s)	40, 227, 357
BsiHKAI	GWGCWC	1 cut(s)	599
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	4 cut(s)	190, 262, 682, 796
BslFI	GGGAC	3 cut(s)	113, 141, 271
BslI	CCNNNNNNNGG	3 cut(s)	97, 185, 725
BsmAI	GTCTC	1 cut(s)	754
BsmFI	GGGAC	3 cut(s)	113, 141, 271
BsnI	GGCC	4 cut(s)	189, 286, 436, 645
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	170, 599
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	56, 497, 708, 830
Bsp1720I	GCTNAGC	1 cut(s)	742
Bsp19I	CCATGG	2 cut(s)	159, 861
BspANI	GGCC	4 cut(s)	189, 286, 436, 645
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	6 cut(s)	42, 229, 259, 260, 359, 717
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	2 cut(s)	505, 716
BspT107I	GGYRCC	3 cut(s)	40, 227, 357
BsrDI	GCAATG	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	4 cut(s)	213, 514, 646, 646
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	4 cut(s)	96, 159, 703, 861
BssMI	GATC	4 cut(s)	56, 497, 708, 830
BssSI	CACGAG	1 cut(s)	801
BssT1I	CCWWGG	3 cut(s)	159, 703, 861
Bst2BI	CACGAG	1 cut(s)	801
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	3 cut(s)	155, 694, 761
Bst6I	CTCTTC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	7 cut(s)	9, 135, 144, 191, 430, 434, 739
BstDEI	CTNAG	2 cut(s)	288, 742
BstDSI	CCRYGG	2 cut(s)	159, 861
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	4 cut(s)	59, 500, 711, 833
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	4 cut(s)	56, 497, 708, 830
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 143, 209, 452, 743, 844
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	95, 260
BsuRI	GGCC	4 cut(s)	189, 286, 436, 645
BtgI	CCRYGG	2 cut(s)	159, 861
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	552, 766
Cac8I	GCNNGC	7 cut(s)	9, 135, 144, 191, 430, 434, 739
CaiI	CAGNNNCTG	1 cut(s)	752
CfoI	GCGC	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	237, 258
Csp6I	GTAC	3 cut(s)	228, 562, 915
CviAII	CATG	4 cut(s)	160, 590, 862, 912
CviQI	GTAC	3 cut(s)	228, 562, 915
DdeI	CTNAG	2 cut(s)	288, 742
DpnI	GATC	4 cut(s)	58, 499, 710, 832
DpnII	GATC	4 cut(s)	56, 497, 708, 830
EaeI	YGGCCR	2 cut(s)	187, 643
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	597
Eco130I	CCWWGG	3 cut(s)	159, 703, 861
Eco147I	AGGCCT	1 cut(s)	436
Eco24I	GRGCYC	2 cut(s)	170, 599
Eco47I	GGWCC	2 cut(s)	237, 258
Eco53kI	GAGCTC	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	3 cut(s)	159, 703, 861
EcoT38I	GRGCYC	2 cut(s)	170, 599
ErhI	CCWWGG	3 cut(s)	159, 703, 861
FaeI	CATG	4 cut(s)	163, 593, 865, 915
FaqI	GGGAC	3 cut(s)	113, 141, 271
FatI	CATG	4 cut(s)	159, 589, 861, 911
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	2 cut(s)	170, 599
FspBI	CTAG	2 cut(s)	351, 429
GlaI	GCGC	1 cut(s)	269
GsaI	CCCAGC	1 cut(s)	735
HaeIII	GGCC	4 cut(s)	189, 286, 436, 645
HapII	CCGG	4 cut(s)	190, 262, 682, 796
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	163, 593, 865, 915
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	739
HinfI	GANTC	3 cut(s)	20, 101, 415
HpaII	CCGG	4 cut(s)	190, 262, 682, 796
HphI	GGTGA	4 cut(s)	42, 51, 326, 838
Hpy166II	GTNNAC	4 cut(s)	76, 126, 562, 697
Hpy188I	TCNGA	8 cut(s)	19, 25, 252, 450, 502, 625, 754, 774
Hpy188III	TCNNGA	2 cut(s)	351, 801
Hpy8I	GTNNAC	4 cut(s)	76, 126, 562, 697
HpyAV	CCTTC	7 cut(s)	54, 157, 189, 305, 348, 488, 528
HpyCH4III	ACNGT	3 cut(s)	155, 694, 761
HpyCH4IV	ACGT	2 cut(s)	81, 575
HpyCH4V	TGCA	6 cut(s)	7, 133, 294, 475, 632, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 143, 209, 452, 743, 844
HpyF3I	CTNAG	2 cut(s)	288, 742
HpySE526I	ACGT	2 cut(s)	81, 575
Hsp92II	CATG	4 cut(s)	163, 593, 865, 915
HspAI	GCGC	1 cut(s)	268
KflI	GGGWCCC	1 cut(s)	258
KpnI	GGTACC	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	189
KroNI	GCCGGC	1 cut(s)	191
Kzo9I	GATC	4 cut(s)	56, 497, 708, 830
LmnI	GCTCC	1 cut(s)	863
LweI	GCATC	3 cut(s)	212, 516, 768
MaeI	CTAG	2 cut(s)	351, 429
MaeII	ACGT	2 cut(s)	81, 575
MaeIII	GTNAC	4 cut(s)	28, 314, 688, 798
MalI	GATC	4 cut(s)	58, 499, 710, 832
MboI	GATC	4 cut(s)	56, 497, 708, 830
MboII	GAAGA	6 cut(s)	234, 317, 320, 397, 562, 664
MhlI	GDGCHC	2 cut(s)	170, 599
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	4 cut(s)	345, 478, 538, 606
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	14, 95
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	192, 250, 710, 758, 797
Mox20I	TGGCCA	1 cut(s)	645
MroNI	GCCGGC	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	3 cut(s)	459, 609, 899
Msp20I	TGGCCA	1 cut(s)	645
MspI	CCGG	4 cut(s)	190, 262, 682, 796
MspR9I	CCNGG	2 cut(s)	97, 262
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	6 cut(s)	139, 143, 209, 452, 743, 844
NaeI	GCCGGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	262
NcoI	CCATGG	2 cut(s)	159, 861
NdeII	GATC	4 cut(s)	56, 497, 708, 830
NgoMIV	GCCGGC	1 cut(s)	189
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	4 cut(s)	163, 593, 865, 915
NlaIV	GGNNCC	6 cut(s)	42, 229, 259, 260, 359, 717
NmuCI	GTSAC	4 cut(s)	28, 314, 688, 798
PaeR7I	CTCGAG	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	436
PdiI	GCCGGC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	415
PleI	GAGTC	2 cut(s)	14, 95
PpsI	GAGTC	2 cut(s)	14, 95
PpuMI	RGGWCCY	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	731
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	6 cut(s)	42, 229, 259, 260, 359, 717
PspPI	GGNCC	2 cut(s)	237, 258
PspPPI	RGGWCCY	1 cut(s)	258
PspXI	VCTCGAGB	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	229, 563, 916
RsaNI	GTAC	3 cut(s)	228, 562, 915
SacI	GAGCTC	1 cut(s)	599
SaqAI	TTAA	3 cut(s)	459, 609, 899
Sau3AI	GATC	4 cut(s)	56, 497, 708, 830
Sau96I	GGNCC	2 cut(s)	237, 258
SchI	GAGTC	2 cut(s)	14, 95
ScrFI	CCNGG	2 cut(s)	97, 262
SduI	GDGCHC	2 cut(s)	170, 599
SfaNI	GCATC	3 cut(s)	212, 516, 768
Sfr274I	CTCGAG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	237, 258
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	4 cut(s)	345, 478, 538, 606
SseBI	AGGCCT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	351, 429
SstI	GAGCTC	1 cut(s)	599
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	95, 260
StyI	CCWWGG	3 cut(s)	159, 703, 861
TaaI	ACNGT	3 cut(s)	155, 694, 761
TaiI	ACGT	2 cut(s)	84, 578
TaqI	TCGA	1 cut(s)	197
TaqII	GACCGA	1 cut(s)	225
TasI	AATT	4 cut(s)	345, 478, 538, 606
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	3 cut(s)	459, 609, 899
Tru9I	TTAA	3 cut(s)	459, 609, 899
TscAI	CASTG	2 cut(s)	552, 766
TseFI	GTSAC	4 cut(s)	28, 314, 688, 798
Tsp45I	GTSAC	4 cut(s)	28, 314, 688, 798
TspDTI	ATGAA	4 cut(s)	36, 551, 578, 900
TspRI	CASTG	2 cut(s)	552, 766
VpaK11BI	GGWCC	2 cut(s)	237, 258
XapI	RAATTY	1 cut(s)	345
XbaI	TCTAGA	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	196
XspI	CTAG	2 cut(s)	351, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.