Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Forward (+)

4052246 .. 4055055

Gene Structure 2810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG051200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCACGCCAAGTCCGATTCCGACGTCACGAGCTTAGCACCGTCGTCGCCGCGATCGCCGAAGCGGCCAGCGTACTATGTCCAGAGCCCATCTAGGGATTCAAACGATGGCGACAAGTCCTCCACCATGCACGCCACGCCGGCCTTCAACAGCCCAACGGAAAGCCCATCTCACCCTTCCTACGGCCGCCACTCGCGGGCCTCCTCCGCCAGCCGGGTCTCCGGTACCTTTAAAGGTTCCCGGAAACGCAGCAACGATAAAGGTTGGCCTGAATGCAAAGTGATCGAAGAAGAAGGGGACTACAATGGGCTCTATGAGGAGAAGGGCATTTCTAGAAGATGCCAGATTTTGATGGCTTTGTTTGGGTTTATTGTCATCTTTTCGATTTTCTGCTTGATTCTTTGGGGTGCTAGTAGACCTTACAAAGCTCGGGTTGCTGTTAAGAGCTTAGCTGTTCACAACTTTTATTTCGGGGAAGGATCGGACATAACTGGTGTGCCTACAAAGATGTTGACGATGAATTGTTCAATGAGGATGAGTGTGTGCAACCCTGCTACGTTTTTCGGTATTCATGTCAGCTCCACCACAATTAGCCTTATGTATTCAGACATTGCTGTTGCAACTGGTCAGTTAAAGAACTACTATCAACCAAGAAAGAGCCACCGGAATGTGGCTGTGAACCTCCAAGGAGTGAAGGTGCCTTTATATGGGGCTGGGGCAAGCTTAGCAGTCGACGATACCAATGGAGGAGTTCCGATGACACTCGTGTTTGAGGTTCGGTCACGAGGGAATGTGGTGGGGAAGTTGGTGAGAACAAGGCACCGGAGGCGCGTATCTTGCTCCATGGATGTAGACTCTCATAAAACCAAACCCATCACATTAAAAGCGAGTTCATGTACGTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

302

Amino Acids

33.14

Weight (kDa)

9.79

Isoelectric Point (pI)

64.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	3 cut(s)	224, 697, 819
AccI	GTMKAC	3 cut(s)	415, 732, 852
AccII	CGCG	3 cut(s)	52, 196, 831
AciI	CCGC	5 cut(s)	50, 64, 187, 196, 207
AclWI	GGATC	1 cut(s)	487
AcoI	YGGCCR	2 cut(s)	65, 184
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	4 cut(s)	74, 226, 898, 902
AfiI	CCNNNNNNNGG	6 cut(s)	94, 182, 196, 213, 670, 707
AgsI	TTSAA	3 cut(s)	102, 148, 528
AluBI	AGCT	6 cut(s)	33, 428, 447, 452, 579, 723
AluI	AGCT	6 cut(s)	33, 428, 447, 452, 579, 723
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	487
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	5 cut(s)	65, 141, 184, 198, 266
ApeKI	GCWGC	1 cut(s)	249
AsiSI	GCGATCGC	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	831
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	2 cut(s)	215, 241
AsuHPI	GGTGA	2 cut(s)	164, 820
AvaI	CYCGRG	1 cut(s)	429
BanI	GGYRCC	3 cut(s)	224, 697, 819
BanII	GRGCYC	2 cut(s)	89, 312
BauI	CACGAG	3 cut(s)	28, 764, 783
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	5 cut(s)	97, 101, 175, 346, 881
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	4 cut(s)	27, 61, 265, 299
BcnI	CCSGG	2 cut(s)	215, 241
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	3 cut(s)	93, 333, 411
BglI	GCCNNNNNGGC	2 cut(s)	64, 140
BisI	GCNGC	4 cut(s)	50, 65, 187, 250
BlpI	GCTNAGC	3 cut(s)	34, 448, 724
BlsI	GCNGC	4 cut(s)	51, 66, 188, 251
Bme1390I	CCNGG	2 cut(s)	215, 241
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	4 cut(s)	226, 238, 699, 821
BmrFI	CCNGG	2 cut(s)	215, 241
BmsI	GCATC	1 cut(s)	329
Bpu1102I	GCTNAGC	3 cut(s)	34, 448, 724
BpuMI	CCSGG	2 cut(s)	215, 241
BsaAI	YACGTR	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	685, 843
BsaWI	WCCGGW	3 cut(s)	221, 663, 822
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 681, 711
Bsc4I	CCNNNNNNNGG	6 cut(s)	94, 182, 196, 213, 670, 707
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	496, 628
Bse3DI	GCAATG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	685, 843
BseGI	GGATG	2 cut(s)	540, 853
BseLI	CCNNNNNNNGG	6 cut(s)	94, 182, 196, 213, 670, 707
BseMI	GCAATG	1 cut(s)	609
BseNI	ACTGG	2 cut(s)	496, 628
BseRI	GAGGAG	3 cut(s)	193, 332, 762
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	713
Bsh1236I	CGCG	3 cut(s)	52, 196, 831
Bsh1285I	CGRYCG	2 cut(s)	56, 187
BshFI	GGCC	5 cut(s)	67, 143, 186, 200, 268
BshNI	GGYRCC	3 cut(s)	224, 697, 819
BsiEI	CGRYCG	2 cut(s)	56, 187
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	6 cut(s)	140, 214, 222, 241, 664, 823
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	6 cut(s)	94, 182, 196, 213, 670, 707
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	5 cut(s)	67, 143, 186, 200, 268
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	89, 312
Bsp143I	GATC	3 cut(s)	53, 282, 479
Bsp1720I	GCTNAGC	3 cut(s)	34, 448, 724
Bsp19I	CCATGG	1 cut(s)	843
BspACI	CCGC	5 cut(s)	50, 64, 187, 196, 207
BspANI	GGCC	5 cut(s)	67, 143, 186, 200, 268
BspFNI	CGCG	3 cut(s)	52, 196, 831
BspLI	GGNNCC	4 cut(s)	226, 238, 699, 821
BspPI	GGATC	1 cut(s)	487
BspT107I	GGYRCC	3 cut(s)	224, 697, 819
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	496, 628
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	685, 843
BssMI	GATC	3 cut(s)	53, 282, 479
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	3 cut(s)	28, 764, 783
BssT1I	CCWWGG	2 cut(s)	685, 843
Bst2BI	CACGAG	3 cut(s)	28, 764, 783
Bst4CI	ACNGT	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	900
BstC8I	GCNNGC	7 cut(s)	6, 69, 132, 141, 198, 211, 721
BstDEI	CTNAG	3 cut(s)	34, 448, 724
BstDSI	CCRYGG	1 cut(s)	843
BstF5I	GGATG	2 cut(s)	540, 853
BstFNI	CGCG	3 cut(s)	52, 196, 831
BstHHI	GCGC	1 cut(s)	831
BstKTI	GATC	3 cut(s)	56, 285, 482
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	53, 282, 479
BstMCI	CGRYCG	2 cut(s)	56, 187
BstMWI	GCNNNNNNNGC	9 cut(s)	55, 64, 136, 140, 206, 434, 725, 826, 837
BstSCI	CCNGG	2 cut(s)	213, 239
BstSNI	TACGTA	1 cut(s)	900
BstUI	CGCG	3 cut(s)	52, 196, 831
BstV1I	GCAGC	1 cut(s)	261
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	5 cut(s)	67, 143, 186, 200, 268
BtgI	CCRYGG	1 cut(s)	843
BtsCI	GGATG	2 cut(s)	540, 853
Cac8I	GCNNGC	7 cut(s)	6, 69, 132, 141, 198, 211, 721
CfoI	GCGC	1 cut(s)	831
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	198
Csp6I	GTAC	4 cut(s)	73, 225, 897, 901
CviAII	CATG	4 cut(s)	127, 572, 844, 894
CviQI	GTAC	4 cut(s)	73, 225, 897, 901
DdeI	CTNAG	3 cut(s)	34, 448, 724
DpnI	GATC	3 cut(s)	55, 284, 481
DpnII	GATC	3 cut(s)	53, 282, 479
DraI	TTTAAA	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	65, 184
EagI	CGGCCG	1 cut(s)	184
EciI	GGCGGA	1 cut(s)	196
EclXI	CGGCCG	1 cut(s)	184
Eco105I	TACGTA	1 cut(s)	900
Eco130I	CCWWGG	2 cut(s)	685, 843
Eco24I	GRGCYC	2 cut(s)	89, 312
Eco31I	GGTCTC	1 cut(s)	223
Eco52I	CGGCCG	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	685, 843
EcoT38I	GRGCYC	2 cut(s)	89, 312
ErhI	CCWWGG	2 cut(s)	685, 843
FaeI	CATG	4 cut(s)	130, 575, 847, 897
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	4 cut(s)	126, 571, 843, 893
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	3 cut(s)	415, 732, 852
Fnu4HI	GCNGC	4 cut(s)	50, 65, 187, 250
FokI	GGATG	2 cut(s)	547, 860
FriOI	GRGCYC	2 cut(s)	89, 312
Fsp4HI	GCNGC	4 cut(s)	50, 65, 187, 250
FspBI	CTAG	3 cut(s)	93, 333, 411
GlaI	GCGC	1 cut(s)	830
GluI	GCNGC	4 cut(s)	50, 65, 187, 250
GsaI	CCCAGC	1 cut(s)	717
HaeIII	GGCC	5 cut(s)	67, 143, 186, 200, 268
HapII	CCGG	6 cut(s)	140, 214, 222, 241, 664, 823
HhaI	GCGC	1 cut(s)	831
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	4 cut(s)	130, 575, 847, 897
Hin6I	GCGC	1 cut(s)	829
HinP1I	GCGC	1 cut(s)	829
HincII	GTYRAC	2 cut(s)	513, 733
HindII	GTYRAC	2 cut(s)	513, 733
HindIII	AAGCTT	1 cut(s)	721
HinfI	GANTC	4 cut(s)	17, 98, 397, 854
HpaII	CCGG	6 cut(s)	140, 214, 222, 241, 664, 823
HphI	GGTGA	2 cut(s)	164, 820
Hpy166II	GTNNAC	6 cut(s)	416, 457, 513, 679, 733, 853
Hpy188I	TCNGA	5 cut(s)	16, 22, 484, 607, 756
Hpy188III	TCNNGA	4 cut(s)	28, 82, 333, 783
Hpy8I	GTNNAC	6 cut(s)	416, 457, 513, 679, 733, 853
Hpy99I	CGWCG	4 cut(s)	26, 46, 49, 737
HpyAV	CCTTC	6 cut(s)	154, 186, 287, 316, 470, 688
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	3 cut(s)	24, 557, 899
HpyCH4V	TGCA	5 cut(s)	4, 130, 276, 546, 620
HpyF10VI	GCNNNNNNNGC	9 cut(s)	55, 64, 136, 140, 206, 434, 725, 826, 837
HpyF3I	CTNAG	3 cut(s)	34, 448, 724
HpySE526I	ACGT	3 cut(s)	24, 557, 899
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	130, 575, 847, 897
HspAI	GCGC	1 cut(s)	829
KpnI	GGTACC	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	139
KroNI	GCCGGC	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	53, 282, 479
LmnI	GCTCC	2 cut(s)	584, 845
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	3 cut(s)	93, 333, 411
MaeII	ACGT	3 cut(s)	24, 557, 899
MaeIII	GTNAC	2 cut(s)	25, 780
MalI	GATC	3 cut(s)	55, 284, 481
MboI	GATC	3 cut(s)	53, 282, 479
MboII	GAAGA	3 cut(s)	299, 302, 348
MhlI	GDGCHC	2 cut(s)	89, 312
MluCI	AATT	2 cut(s)	520, 588
MlyI	GAGTC	1 cut(s)	848
MmeI	TCCRAC	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	139
MseI	TTAA	4 cut(s)	231, 441, 632, 881
MslI	CAYNNNNRTG	1 cut(s)	666
MspI	CCGG	6 cut(s)	140, 214, 222, 241, 664, 823
MspR9I	CCNGG	2 cut(s)	215, 241
Mva1269I	GAATGC	1 cut(s)	278
MvnI	CGCG	3 cut(s)	52, 196, 831
MwoI	GCNNNNNNNGC	9 cut(s)	55, 64, 136, 140, 206, 434, 725, 826, 837
NaeI	GCCGGC	1 cut(s)	141
NciI	CCSGG	2 cut(s)	215, 241
NcoI	CCATGG	1 cut(s)	843
NdeII	GATC	3 cut(s)	53, 282, 479
NgoMIV	GCCGGC	1 cut(s)	139
NlaIII	CATG	4 cut(s)	130, 575, 847, 897
NlaIV	GGNNCC	4 cut(s)	226, 238, 699, 821
NmuCI	GTSAC	2 cut(s)	25, 780
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	278
PdiI	GCCGGC	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	17, 98, 397
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	51, 66, 188, 251
Ple19I	CGATCG	1 cut(s)	56
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
Ppu21I	YACGTR	1 cut(s)	900
PspFI	CCCAGC	1 cut(s)	713
PspN4I	GGNNCC	4 cut(s)	226, 238, 699, 821
PspPI	GGNCC	1 cut(s)	198
PvuI	CGATCG	1 cut(s)	56
RgaI	GCGATCGC	1 cut(s)	56
RsaI	GTAC	4 cut(s)	74, 226, 898, 902
RsaNI	GTAC	4 cut(s)	73, 225, 897, 901
RseI	CAYNNNNRTG	1 cut(s)	666
SalI	GTCGAC	1 cut(s)	731
SaqAI	TTAA	4 cut(s)	231, 441, 632, 881
SatI	GCNGC	4 cut(s)	50, 65, 187, 250
Sau3AI	GATC	3 cut(s)	53, 282, 479
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	1 cut(s)	848
ScrFI	CCNGG	2 cut(s)	215, 241
SduI	GDGCHC	2 cut(s)	89, 312
SfaAI	GCGATCGC	1 cut(s)	56
SfaNI	GCATC	1 cut(s)	329
SgfI	GCGATCGC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	666
SnaBI	TACGTA	1 cut(s)	900
Sse9I	AATT	2 cut(s)	520, 588
SsiI	CCGC	5 cut(s)	50, 64, 187, 196, 207
SspMI	CTAG	3 cut(s)	93, 333, 411
StyD4I	CCNGG	2 cut(s)	213, 239
StyI	CCWWGG	2 cut(s)	685, 843
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	3 cut(s)	27, 560, 902
TaqI	TCGA	3 cut(s)	285, 383, 732
TaqII	GACCGA	1 cut(s)	768
TasI	AATT	2 cut(s)	520, 588
TauI	GCSGC	3 cut(s)	52, 67, 189
TfiI	GAWTC	3 cut(s)	17, 98, 397
Tru1I	TTAA	4 cut(s)	231, 441, 632, 881
Tru9I	TTAA	4 cut(s)	231, 441, 632, 881
TseFI	GTSAC	2 cut(s)	25, 780
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	2 cut(s)	25, 780
TspDTI	ATGAA	3 cut(s)	533, 560, 882
TspGWI	ACGGA	1 cut(s)	173
XbaI	TCTAGA	1 cut(s)	332
XmiI	GTMKAC	3 cut(s)	415, 732, 852
XspI	CTAG	3 cut(s)	93, 333, 411
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.