FvH4_6g31661

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002766
Physical Location & Seq
Forward (+)
24763108 .. 24765888
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31661.t5

Sequence Viewer

Length: 951 bp
ATGCTTTCAGCTAAATCCGAGTCTGATATGACTAGCTTAGCTGCATCATCACCATCAAGGTCTCCAAAGGTTCCTGTGTACTATGTTCAAAGCCCTTCAAGGGACTCACAAGTCTCACATGATGGAGACAAGTCCTCCTCAATGCAGGCCACTCCAATTTACAATAACAGCCCTATGGAGTCACCCTCCCACCCCTCCTTTGGAAGGCACTCGAGGAACTCCTCTGCGAGCCGGTTCTCGGGGATTTTCAGGTCCTCCTCAGGGAGGAAGGGCGGCCGGAAGCAGCATAGGAACAATGACAAAGGGTGGCCGGAGTGTAAAGTAATTATGGAAGAAGGGGATTATGATGATCTTGATAAGGAGTTTTCGAGGCGTATGCAGATCTTGATGGCTCTATTTGGCTTTGTGGTGTTGTTCACTGTCTTCTGCTTGATCATTTGGGGAGCAAGTAAGCCTTTCAAAGCTGAGGTTTTAGTCAAGAGCTTGACAGTTAGCAATGTCTACGTTGGCGAGGGTTCAGATTTTTCAGGGGTTCCAACAAAGATGCTGACAGTGAATGGCTCACTAAAATTCACTGTGCGCAACCCTGCTTCAATTTTTGGCATTCATGTTAGCTCCACACCCATCAATCTTCTCTATTCAGACATTTCTGTTGCAACTGGTCAGTTAAAGAAATACTACCAGCCAAGAAAGAGCTCCCGAACAGTATCAGTGATTTTGGCAGGGACCAAGGTTCCTCTGTATGGTGCTGGATCAAGTTTGATGTACTCTTCAACTGGTGCTTTGGCTCCAGTTCCACTGACCCTAAATTTTGAAATCAAGTCTCGAGGGTACGTTGTTGGACATCTAGTGAAAACCAAACACATAAGGGCAATCTCATGTCCTTTGGTTATAGATCCTACTGTCACCAAACCCCTCAAGTTCAAAGAGAGTTCTTGCACTTATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
LEA_2

Protein Analysis

317

Amino Acids

34.55

Weight (kDa)

9.75

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 190 - 281 6.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 945
AasI GACNNNNNNGTC 1 cut(s) 110
Acc16I TGCGCA 1 cut(s) 581
AccI GTMKAC 1 cut(s) 501
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 760, 890
AcoI YGGCCR 2 cut(s) 274, 308
AcsI RAATTY 2 cut(s) 569, 808
AfaI GTAC 3 cut(s) 80, 767, 833
AfiI CCNNNNNNNGG 7 cut(s) 100, 200, 204, 238, 261, 264, 743
AgsI TTSAA 7 cut(s) 89, 99, 460, 594, 774, 815, 925
AluBI AGCT 7 cut(s) 11, 36, 41, 464, 483, 615, 696
AluI AGCT 7 cut(s) 11, 36, 41, 464, 483, 615, 696
Alw21I GWGCWC 1 cut(s) 698
Alw26I GTCTC 4 cut(s) 66, 118, 120, 828
AlwI GGATC 2 cut(s) 760, 890
Ama87I CYCGRG 3 cut(s) 211, 238, 825
AoxI GGCC 3 cut(s) 147, 274, 308
ApeKI GCWGC 2 cut(s) 41, 283
ApoI RAATTY 2 cut(s) 569, 808
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 2 cut(s) 252, 726
AsuHPI GGTGA 3 cut(s) 42, 174, 898
AvaI CYCGRG 3 cut(s) 211, 238, 825
AvaII GGWCC 2 cut(s) 252, 726
AxyI CCTNAGG 1 cut(s) 259
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 698
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 28, 295
BccI CCATC 4 cut(s) 61, 116, 382, 632
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 4 cut(s) 66, 118, 120, 828
BfaI CTAG 2 cut(s) 33, 848
BglII AGATCT 1 cut(s) 381
BisI GCNGC 3 cut(s) 42, 274, 284
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 3 cut(s) 43, 275, 285
Bme18I GGWCC 2 cut(s) 252, 726
BmeT110I CYCGRG 3 cut(s) 211, 238, 825
BmgT120I GGNCC 2 cut(s) 252, 726
BmiI GGNNCC 5 cut(s) 72, 534, 727, 735, 789
BmsI GCATC 2 cut(s) 53, 534
BpiI GAAGAC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 1 cut(s) 774
Bpu10I CCTNAGC 1 cut(s) 465
Bpu1102I GCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 902
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 729
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 7 cut(s) 100, 200, 204, 238, 261, 264, 743
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 3 cut(s) 664, 781, 791
Bse21I CCTNAGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 729
BseLI CCNNNNNNNGG 7 cut(s) 100, 200, 204, 238, 261, 264, 743
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 273, 456
BseNI ACTGG 3 cut(s) 664, 781, 791
BseRI GAGGAG 3 cut(s) 127, 211, 247
BseX3I CGGCCG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 28, 295
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 3 cut(s) 149, 276, 310
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 698
BsiHKCI CYCGRG 3 cut(s) 211, 238, 825
BsiSI CCGG 3 cut(s) 232, 277, 311
BslFI GGGAC 2 cut(s) 116, 739
BslI CCNNNNNNNGG 7 cut(s) 100, 200, 204, 238, 261, 264, 743
BsmAI GTCTC 4 cut(s) 66, 118, 120, 828
BsmFI GGGAC 2 cut(s) 116, 739
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 3 cut(s) 149, 276, 310
Bso31I GGTCTC 1 cut(s) 66
BsoBI CYCGRG 3 cut(s) 211, 238, 825
Bsp1286I GDGCHC 1 cut(s) 698
Bsp143I GATC 5 cut(s) 349, 381, 432, 752, 895
Bsp1720I GCTNAGC 1 cut(s) 37
BspACI CCGC 1 cut(s) 273
BspANI GGCC 3 cut(s) 149, 276, 310
BspCNI CTCAG 2 cut(s) 272, 457
BspLI GGNNCC 5 cut(s) 72, 534, 727, 735, 789
BspPI GGATC 2 cut(s) 760, 890
BspTNI GGTCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 3 cut(s) 664, 781, 791
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 5 cut(s) 349, 381, 432, 752, 895
BssT1I CCWWGG 1 cut(s) 729
Bst4CI ACNGT 6 cut(s) 421, 490, 553, 577, 706, 904
Bst6I CTCTTC 1 cut(s) 775
BstC8I GCNNGC 2 cut(s) 147, 229
BstDEI CTNAG 3 cut(s) 37, 259, 465
BstENI CCTNNNNNAGG 2 cut(s) 202, 262
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 5 cut(s) 352, 384, 435, 755, 898
BstMAI GTCTC 4 cut(s) 66, 118, 120, 828
BstMBI GATC 5 cut(s) 349, 381, 432, 752, 895
BstMCI CGRYCG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 28, 295
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 2 cut(s) 381, 895
BstYI RGATCY 2 cut(s) 381, 895
BstZI CGGCCG 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 259
BsuRI GGCC 3 cut(s) 149, 276, 310
BtsIMutI CAGTG 5 cut(s) 417, 558, 573, 717, 797
Cac8I GCNNGC 2 cut(s) 147, 229
CfoI GCGC 1 cut(s) 582
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 252, 726
Csp6I GTAC 3 cut(s) 79, 766, 832
CviAII CATG 3 cut(s) 119, 608, 879
CviQI GTAC 3 cut(s) 79, 766, 832
DdeI CTNAG 3 cut(s) 37, 259, 465
DpnI GATC 5 cut(s) 351, 383, 434, 754, 897
DpnII GATC 5 cut(s) 349, 381, 432, 752, 895
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 2 cut(s) 274, 308
EagI CGGCCG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 775
EarI CTCTTC 1 cut(s) 775
Ecl136II GAGCTC 1 cut(s) 696
EclXI CGGCCG 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 252, 726
Eco52I CGGCCG 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 696
Eco81I CCTNAGG 1 cut(s) 259
Eco88I CYCGRG 3 cut(s) 211, 238, 825
EcoICRI GAGCTC 1 cut(s) 696
EcoNI CCTNNNNNAGG 2 cut(s) 202, 262
EcoO109I RGGNCCY 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 729
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 3 cut(s) 122, 611, 882
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 2 cut(s) 116, 739
FatI CATG 3 cut(s) 118, 607, 878
FbaI TGATCA 1 cut(s) 432
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 42, 274, 284
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 3 cut(s) 42, 274, 284
FspBI CTAG 2 cut(s) 33, 848
FspI TGCGCA 1 cut(s) 581
GlaI GCGC 1 cut(s) 581
GluI GCNGC 3 cut(s) 42, 274, 284
GsuI CTGGAG 1 cut(s) 774
HaeIII GGCC 3 cut(s) 149, 276, 310
HapII CCGG 3 cut(s) 232, 277, 311
HhaI GCGC 1 cut(s) 582
Hin1II CATG 3 cut(s) 122, 611, 882
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HinfI GANTC 3 cut(s) 20, 104, 179
HpaII CCGG 3 cut(s) 232, 277, 311
HphI GGTGA 3 cut(s) 42, 174, 898
Hpy166II GTNNAC 3 cut(s) 79, 417, 502
Hpy188I TCNGA 4 cut(s) 19, 25, 520, 643
Hpy188III TCNNGA 5 cut(s) 353, 385, 478, 699, 825
Hpy8I GTNNAC 3 cut(s) 79, 417, 502
HpyAV CCTTC 4 cut(s) 105, 198, 262, 329
HpyCH4III ACNGT 6 cut(s) 421, 490, 553, 577, 706, 904
HpyCH4IV ACGT 2 cut(s) 504, 834
HpyCH4V TGCA 5 cut(s) 44, 145, 379, 656, 939
HpyF3I CTNAG 3 cut(s) 37, 259, 465
HpySE526I ACGT 2 cut(s) 504, 834
Hsp92II CATG 3 cut(s) 122, 611, 882
HspAI GCGC 1 cut(s) 580
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 5 cut(s) 349, 381, 432, 752, 895
LmnI GCTCC 4 cut(s) 443, 620, 701, 793
Lsp1109I GCAGC 2 cut(s) 28, 295
LweI GCATC 2 cut(s) 53, 534
MaeI CTAG 2 cut(s) 33, 848
MaeII ACGT 2 cut(s) 504, 834
MaeIII GTNAC 2 cut(s) 180, 904
MalI GATC 5 cut(s) 351, 383, 434, 754, 897
MboI GATC 5 cut(s) 349, 381, 432, 752, 895
MboII GAAGA 4 cut(s) 344, 415, 623, 762
MflI RGATCY 2 cut(s) 381, 895
MhlI GDGCHC 1 cut(s) 698
MluCI AATT 5 cut(s) 156, 324, 569, 594, 808
MlyI GAGTC 3 cut(s) 29, 98, 188
MmeI TCCRAC 2 cut(s) 560, 820
MseI TTAA 1 cut(s) 668
MspI CCGG 3 cut(s) 232, 277, 311
Mva1269I GAATGC 1 cut(s) 603
NdeII GATC 5 cut(s) 349, 381, 432, 752, 895
NlaIII CATG 3 cut(s) 122, 611, 882
NlaIV GGNNCC 5 cut(s) 72, 534, 727, 735, 789
NmuCI GTSAC 2 cut(s) 180, 904
NsbI TGCGCA 1 cut(s) 581
PaeR7I CTCGAG 2 cut(s) 211, 825
PctI GAATGC 1 cut(s) 603
PkrI GCNGC 3 cut(s) 43, 275, 285
PleI GAGTC 3 cut(s) 28, 98, 187
PpsI GAGTC 3 cut(s) 28, 98, 187
PpuMI RGGWCCY 1 cut(s) 252
PsiI TTATAA 1 cut(s) 945
Psp124BI GAGCTC 1 cut(s) 698
Psp5II RGGWCCY 1 cut(s) 252
PspN4I GGNNCC 5 cut(s) 72, 534, 727, 735, 789
PspPI GGNCC 2 cut(s) 252, 726
PspPPI RGGWCCY 1 cut(s) 252
PspXI VCTCGAGB 1 cut(s) 211
PsuI RGATCY 2 cut(s) 381, 895
RsaI GTAC 3 cut(s) 80, 767, 833
RsaNI GTAC 3 cut(s) 79, 766, 832
SacI GAGCTC 1 cut(s) 698
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 3 cut(s) 42, 274, 284
Sau3AI GATC 5 cut(s) 349, 381, 432, 752, 895
Sau96I GGNCC 2 cut(s) 252, 726
SchI GAGTC 3 cut(s) 29, 98, 188
SduI GDGCHC 1 cut(s) 698
SfaNI GCATC 2 cut(s) 53, 534
Sfr274I CTCGAG 2 cut(s) 211, 825
SinI GGWCC 2 cut(s) 252, 726
SlaI CTCGAG 2 cut(s) 211, 825
SmlI CTYRAG 3 cut(s) 211, 825, 917
SmoI CTYRAG 3 cut(s) 211, 825, 917
Sse9I AATT 5 cut(s) 156, 324, 569, 594, 808
SsiI CCGC 1 cut(s) 273
SspMI CTAG 2 cut(s) 33, 848
SstI GAGCTC 1 cut(s) 698
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 6 cut(s) 421, 490, 553, 577, 706, 904
TaiI ACGT 2 cut(s) 507, 837
TaqI TCGA 3 cut(s) 212, 368, 826
TasI AATT 5 cut(s) 156, 324, 569, 594, 808
TatI WGTACW 2 cut(s) 78, 765
TauI GCSGC 1 cut(s) 276
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TscAI CASTG 5 cut(s) 424, 558, 580, 717, 804
TseFI GTSAC 2 cut(s) 180, 904
TseI GCWGC 2 cut(s) 41, 283
Tsp45I GTSAC 2 cut(s) 180, 904
TspDTI ATGAA 1 cut(s) 596
TspRI CASTG 5 cut(s) 424, 558, 580, 717, 804
VpaK11BI GGWCC 2 cut(s) 252, 726
XagI CCTNNNNNAGG 2 cut(s) 202, 262
XapI RAATTY 2 cut(s) 569, 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XhoI CTCGAG 2 cut(s) 211, 825
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 2 cut(s) 33, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.