Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Forward (+)

3574466 .. 3577190

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG049900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCACGCCAAGTCCGATTCCGACGTCACGAGCTTAGCACCGTCGTCGCCGCGATCGCCGAAGCGGCCAGTGTACTATGTCCAGAGCCCATCTAGGGATTCAAACGATGGCGACAAGTCCTCCACCATGCACGCCACGCCGGCCTTCAACAGCCCAACGGAAAGCCCATCTCACCCTTCCTACGGCCGCCACTCGCGGGCCTCCTCCGCCAGCCGGGTCTCCGGTACCTTTAAAGGTTCCCGGAAACGCAGCAACGATAAAGGTTGGCCTGAATGCAAAGTGATCGAAGAAGAAGGGGACTACAATGGGCTCTATGAGGAGAAGGGCATTTCTAGAAGATGCCAGATTTTGATGGCTTTGTTTGGATTTATTGTCATCTTTTCGATTTTCTGCTTGATTCTTTGGGGTGCTAGTAGACCTTACAAAGCTCGGGTTGCTGTTAAGAGCTTAGCTGTTCATAACTTTTATTTCGGGGAAGGATCGGACATAACTGGTGTCCCTACGAAGATGTTGACGATGAATTGTTCAATGAGGATGAGTGTGTACAACCCTGCTACATTTTTCGGTATTCATGTCAGCTCCACCACAATTAGCCTTATGTATTCAGATATTGCTGTTGCAACTGGTCAGGTAAGATTTCTGGCTTCGATTATTATTGGGTATATGATGTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

225

Amino Acids

24.78

Weight (kDa)

9.39

Isoelectric Point (pI)

71.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	415
AccII	CGCG	2 cut(s)	52, 196
AciI	CCGC	5 cut(s)	50, 64, 187, 196, 207
AclWI	GGATC	1 cut(s)	487
AcoI	YGGCCR	2 cut(s)	65, 184
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	3 cut(s)	74, 226, 545
AfiI	CCNNNNNNNGG	4 cut(s)	94, 182, 196, 213
AgsI	TTSAA	3 cut(s)	102, 148, 528
AluBI	AGCT	5 cut(s)	33, 428, 447, 452, 579
AluI	AGCT	5 cut(s)	33, 428, 447, 452, 579
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	487
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	5 cut(s)	65, 141, 184, 198, 266
ApeKI	GCWGC	1 cut(s)	249
AsiSI	GCGATCGC	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	2 cut(s)	215, 241
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	89, 312
BauI	CACGAG	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	4 cut(s)	97, 101, 175, 346
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	4 cut(s)	27, 61, 265, 299
BcnI	CCSGG	2 cut(s)	215, 241
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	3 cut(s)	93, 333, 411
BglI	GCCNNNNNGGC	2 cut(s)	64, 140
BisI	GCNGC	4 cut(s)	50, 65, 187, 250
BlpI	GCTNAGC	2 cut(s)	34, 448
BlsI	GCNGC	4 cut(s)	51, 66, 188, 251
Bme1390I	CCNGG	2 cut(s)	215, 241
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	2 cut(s)	226, 238
BmrFI	CCNGG	2 cut(s)	215, 241
BmsI	GCATC	1 cut(s)	329
Bpu1102I	GCTNAGC	2 cut(s)	34, 448
BpuMI	CCSGG	2 cut(s)	215, 241
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 182, 196, 213
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	3 cut(s)	68, 496, 628
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	4 cut(s)	94, 182, 196, 213
BseNI	ACTGG	3 cut(s)	68, 496, 628
BseRI	GAGGAG	2 cut(s)	193, 332
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	261
Bsh1236I	CGCG	2 cut(s)	52, 196
Bsh1285I	CGRYCG	2 cut(s)	56, 187
BshFI	GGCC	5 cut(s)	67, 143, 186, 200, 268
BshNI	GGYRCC	1 cut(s)	224
BsiEI	CGRYCG	2 cut(s)	56, 187
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	4 cut(s)	140, 214, 222, 241
BslFI	GGGAC	2 cut(s)	311, 482
BslI	CCNNNNNNNGG	4 cut(s)	94, 182, 196, 213
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	311, 482
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	5 cut(s)	67, 143, 186, 200, 268
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	89, 312
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	53, 282, 479
Bsp1720I	GCTNAGC	2 cut(s)	34, 448
BspACI	CCGC	5 cut(s)	50, 64, 187, 196, 207
BspANI	GGCC	5 cut(s)	67, 143, 186, 200, 268
BspFNI	CGCG	2 cut(s)	52, 196
BspLI	GGNNCC	2 cut(s)	226, 238
BspPI	GGATC	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	68, 496, 628
BssAI	RCCGGY	1 cut(s)	139
BssMI	GATC	3 cut(s)	53, 282, 479
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	5 cut(s)	6, 132, 141, 198, 211
BstDEI	CTNAG	2 cut(s)	34, 448
BstF5I	GGATG	1 cut(s)	540
BstFNI	CGCG	2 cut(s)	52, 196
BstKTI	GATC	3 cut(s)	56, 285, 482
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	53, 282, 479
BstMCI	CGRYCG	2 cut(s)	56, 187
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 64, 136, 140, 206, 434
BstSCI	CCNGG	2 cut(s)	213, 239
BstUI	CGCG	2 cut(s)	52, 196
BstV1I	GCAGC	1 cut(s)	261
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	5 cut(s)	67, 143, 186, 200, 268
BtsCI	GGATG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	5 cut(s)	6, 132, 141, 198, 211
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	198
Csp6I	GTAC	3 cut(s)	73, 225, 544
CviAII	CATG	2 cut(s)	127, 572
CviQI	GTAC	3 cut(s)	73, 225, 544
DdeI	CTNAG	2 cut(s)	34, 448
DpnI	GATC	3 cut(s)	55, 284, 481
DpnII	GATC	3 cut(s)	53, 282, 479
DraI	TTTAAA	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	65, 184
EagI	CGGCCG	1 cut(s)	184
EciI	GGCGGA	1 cut(s)	196
EclXI	CGGCCG	1 cut(s)	184
Eco24I	GRGCYC	2 cut(s)	89, 312
Eco31I	GGTCTC	1 cut(s)	223
Eco52I	CGGCCG	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	89, 312
FaeI	CATG	2 cut(s)	130, 575
FaiI	YATR	9 cut(s)	78, 128, 315, 459, 488, 573, 599, 663, 665
FaqI	GGGAC	2 cut(s)	311, 482
FatI	CATG	2 cut(s)	126, 571
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	4 cut(s)	50, 65, 187, 250
FokI	GGATG	1 cut(s)	547
FriOI	GRGCYC	2 cut(s)	89, 312
Fsp4HI	GCNGC	4 cut(s)	50, 65, 187, 250
FspBI	CTAG	3 cut(s)	93, 333, 411
GluI	GCNGC	4 cut(s)	50, 65, 187, 250
HaeIII	GGCC	5 cut(s)	67, 143, 186, 200, 268
HapII	CCGG	4 cut(s)	140, 214, 222, 241
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	130, 575
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	3 cut(s)	17, 98, 397
HpaII	CCGG	4 cut(s)	140, 214, 222, 241
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	4 cut(s)	73, 416, 513, 544
Hpy188I	TCNGA	4 cut(s)	16, 22, 484, 607
Hpy188III	TCNNGA	3 cut(s)	28, 82, 333
Hpy8I	GTNNAC	4 cut(s)	73, 416, 513, 544
Hpy99I	CGWCG	3 cut(s)	26, 46, 49
HpyAV	CCTTC	5 cut(s)	154, 186, 287, 316, 470
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	4 cut(s)	4, 130, 276, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 64, 136, 140, 206, 434
HpyF3I	CTNAG	2 cut(s)	34, 448
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	130, 575
KpnI	GGTACC	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	139
KroNI	GCCGGC	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	53, 282, 479
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	3 cut(s)	93, 333, 411
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	55, 284, 481
MboI	GATC	3 cut(s)	53, 282, 479
MboII	GAAGA	4 cut(s)	299, 302, 348, 517
MhlI	GDGCHC	2 cut(s)	89, 312
MluCI	AATT	2 cut(s)	520, 588
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	130, 211, 214, 310, 525
MroNI	GCCGGC	1 cut(s)	139
MseI	TTAA	2 cut(s)	231, 441
MspI	CCGG	4 cut(s)	140, 214, 222, 241
MspR9I	CCNGG	2 cut(s)	215, 241
Mva1269I	GAATGC	1 cut(s)	278
MvnI	CGCG	2 cut(s)	52, 196
MwoI	GCNNNNNNNGC	6 cut(s)	55, 64, 136, 140, 206, 434
NaeI	GCCGGC	1 cut(s)	141
NciI	CCSGG	2 cut(s)	215, 241
NdeII	GATC	3 cut(s)	53, 282, 479
NgoMIV	GCCGGC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	130, 575
NlaIV	GGNNCC	2 cut(s)	226, 238
NmuCI	GTSAC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	278
PdiI	GCCGGC	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	17, 98, 397
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	51, 66, 188, 251
Ple19I	CGATCG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	226, 238
PspPI	GGNCC	1 cut(s)	198
PvuI	CGATCG	1 cut(s)	56
RgaI	GCGATCGC	1 cut(s)	56
RsaI	GTAC	3 cut(s)	74, 226, 545
RsaNI	GTAC	3 cut(s)	73, 225, 544
SaqAI	TTAA	2 cut(s)	231, 441
SatI	GCNGC	4 cut(s)	50, 65, 187, 250
Sau3AI	GATC	3 cut(s)	53, 282, 479
Sau96I	GGNCC	1 cut(s)	198
ScrFI	CCNGG	2 cut(s)	215, 241
SduI	GDGCHC	2 cut(s)	89, 312
SfaAI	GCGATCGC	1 cut(s)	56
SfaNI	GCATC	1 cut(s)	329
SgfI	GCGATCGC	1 cut(s)	56
Sse9I	AATT	2 cut(s)	520, 588
SsiI	CCGC	5 cut(s)	50, 64, 187, 196, 207
SspMI	CTAG	3 cut(s)	93, 333, 411
StyD4I	CCNGG	2 cut(s)	213, 239
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	3 cut(s)	285, 383, 647
TasI	AATT	2 cut(s)	520, 588
TatI	WGTACW	2 cut(s)	72, 543
TauI	GCSGC	3 cut(s)	52, 67, 189
TfiI	GAWTC	3 cut(s)	17, 98, 397
Tru1I	TTAA	2 cut(s)	231, 441
Tru9I	TTAA	2 cut(s)	231, 441
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	446, 533, 560
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	75
XbaI	TCTAGA	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	3 cut(s)	93, 333, 411
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.