Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Forward (+)

14506878 .. 14509807

Gene Structure 2930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1183300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGACGCACGCGAAATCTGACTCAGACGTGACGAGCCTATCCCCATCATCACCCAGATCACCCAAGCGCCCGGTGTACTACGTTCAAAGCCCCTCCAGGGACTCCAACGATGGCGATAAATCCTCCACAGTGCAAGCCACCCCCGCCTTCAACAGCCCCATGGAGTCCCCCTCCCACCCCTCCTACGGCCACCACTCCCGGGCCTCCTCCTCCAGTCGGGTCTCGGGCCCTTTCCGGTCCTCTAATTCCGGTCAGAAGGGTGCCCGGAAGCGCAACGACAAGGGGTGGCCGGAGTGCAATGTGATCGAGGAGGATGGAGATTATGGAGGGCTTTATGGGAATAAAGGGATTCCGAGAAGGTGCCAGATTTGTGTTGCTCTGTTCGGATTTGTTGTGATTTTCTCTGTTTTTTGCTTAATTCTTTGGGGAGCTAGCAGGCCGTACAAGGCAAGGGTTTCTGTTAAGAGCTTGGCTGTCCATAATTTTTATTTCGGGGAAGGATCGGACATGACTGGTGTGCCTACAAAGATGCTGACAATGAACTGTTCAGTGAGGATGACTGTGTACAACCCAGCTACGTTCTTCGGTATCCATGTCAGCTCCACGCCGATTAAACTGATGTATTCAGAGATCGCAGTTGCAACTGGTCAGTTGAAGAAATACTACCAACCAAGAAAGAGTTACCGGAATGTGACTGTGAACCTCCAAGGGATCAAGGTTCCTTTATACGGGGCTGGGGCAAGCTTAGCAGTATCTGATAACAACGGAGGAGTTCCCATGATGCTCGTGTTTGAAGTCCGGTCGCGAGGGAATGTGGTGGGGAGGCTGGTGAGATCAAAGCACCGAAGGCACGTATCTTGCACCATGGAAGTCGGCTCTCATAGTAGCACACCCATCAAGTTAAAAACGAGTTCATGTACTTATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

310

Amino Acids

33.79

Weight (kDa)

9.9

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	924
AccB1I	GGYRCC	2 cut(s)	260, 360
AccII	CGCG	2 cut(s)	11, 805
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	508, 719
AcoI	YGGCCR	2 cut(s)	187, 287
AfaI	GTAC	4 cut(s)	77, 443, 566, 919
AfiI	CCNNNNNNNGG	5 cut(s)	97, 185, 199, 216, 728
AgsI	TTSAA	4 cut(s)	86, 151, 655, 794
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	5 cut(s)	431, 468, 575, 600, 744
AluI	AGCT	5 cut(s)	431, 468, 575, 600, 744
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	508, 719
AlwNI	CAGNNNCTG	1 cut(s)	755
Ama87I	CYCGRG	2 cut(s)	198, 223
AoxI	GGCC	5 cut(s)	187, 201, 226, 287, 437
ApaI	GGGCCC	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	69, 273
AspS9I	GGNCC	4 cut(s)	201, 226, 227, 237
AsuC2I	CCSGG	4 cut(s)	71, 199, 200, 265
AsuHPI	GGTGA	3 cut(s)	42, 51, 841
AsuNHI	GCTAGC	1 cut(s)	431
AvaI	CYCGRG	2 cut(s)	198, 223
AvaII	GGWCC	1 cut(s)	237
BaeGI	GKGCMC	2 cut(s)	230, 265
BanI	GGYRCC	2 cut(s)	260, 360
BanII	GRGCYC	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	647, 679
BauI	CACGAG	1 cut(s)	785
BccI	CCATC	4 cut(s)	52, 104, 308, 902
BceAI	ACGGC	2 cut(s)	202, 424
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	599
BcnI	CCSGG	4 cut(s)	71, 199, 200, 265
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	599
BlpI	GCTNAGC	1 cut(s)	745
Bme1390I	CCNGG	5 cut(s)	71, 97, 199, 200, 265
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	2 cut(s)	198, 223
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	4 cut(s)	201, 226, 227, 237
BmiI	GGNNCC	4 cut(s)	228, 262, 362, 720
BmrFI	CCNGG	5 cut(s)	71, 97, 199, 200, 265
BmsI	GCATC	2 cut(s)	519, 771
BmtI	GCTAGC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	2 cut(s)	79, 196
Bpu1102I	GCTNAGC	1 cut(s)	745
BpuMI	CCSGG	4 cut(s)	71, 199, 200, 265
BsaAI	YACGTR	1 cut(s)	853
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	5 cut(s)	96, 159, 198, 706, 864
BsaWI	WCCGGW	4 cut(s)	234, 248, 684, 798
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 185, 199, 216, 728
Bse1I	ACTGG	3 cut(s)	213, 517, 649
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	5 cut(s)	96, 159, 198, 706, 864
BseGI	GGATG	2 cut(s)	319, 561
BseLI	CCNNNNNNNGG	5 cut(s)	97, 185, 199, 216, 728
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	3 cut(s)	213, 517, 649
BseRI	GAGGAG	4 cut(s)	196, 199, 323, 783
BseSI	GKGCMC	2 cut(s)	230, 265
BseYI	CCCAGC	2 cut(s)	571, 734
Bsh1236I	CGCG	2 cut(s)	11, 805
Bsh1285I	CGRYCG	1 cut(s)	803
BshFI	GGCC	5 cut(s)	189, 203, 228, 289, 439
BshNI	GGYRCC	2 cut(s)	260, 360
BsiEI	CGRYCG	1 cut(s)	803
BsiHKCI	CYCGRG	2 cut(s)	198, 223
BsiSI	CCGG	8 cut(s)	71, 199, 235, 249, 265, 290, 685, 799
BslFI	GGGAC	2 cut(s)	113, 151
BslI	CCNNNNNNNGG	5 cut(s)	97, 185, 199, 216, 728
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	2 cut(s)	113, 151
BsnI	GGCC	5 cut(s)	189, 203, 228, 289, 439
Bso31I	GGTCTC	1 cut(s)	226
BsoBI	CYCGRG	2 cut(s)	198, 223
Bsp120I	GGGCCC	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	230, 265
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	6 cut(s)	56, 303, 500, 630, 711, 833
Bsp1720I	GCTNAGC	1 cut(s)	745
Bsp19I	CCATGG	2 cut(s)	159, 864
Bsp68I	TCGCGA	1 cut(s)	805
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	5 cut(s)	189, 203, 228, 289, 439
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	2 cut(s)	11, 805
BspLI	GGNNCC	4 cut(s)	228, 262, 362, 720
BspOI	GCTAGC	1 cut(s)	435
BspPI	GGATC	2 cut(s)	508, 719
BspT107I	GGYRCC	2 cut(s)	260, 360
BspTNI	GGTCTC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	304
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	3 cut(s)	213, 517, 649
BssECI	CCNNGG	5 cut(s)	96, 159, 198, 706, 864
BssMI	GATC	6 cut(s)	56, 303, 500, 630, 711, 833
BssSI	CACGAG	1 cut(s)	785
BssT1I	CCWWGG	3 cut(s)	159, 706, 864
Bst2BI	CACGAG	1 cut(s)	785
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	4 cut(s)	130, 545, 562, 697
BstAUI	TGTACA	1 cut(s)	564
BstBAI	YACGTR	1 cut(s)	853
BstC8I	GCNNGC	5 cut(s)	9, 135, 433, 437, 742
BstDEI	CTNAG	2 cut(s)	22, 745
BstDSI	CCRYGG	2 cut(s)	159, 864
BstF5I	GGATG	2 cut(s)	319, 561
BstFNI	CGCG	2 cut(s)	11, 805
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 273
BstKTI	GATC	6 cut(s)	59, 306, 503, 633, 714, 836
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	6 cut(s)	56, 303, 500, 630, 711, 833
BstMCI	CGRYCG	1 cut(s)	803
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 746, 847
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	5 cut(s)	69, 95, 197, 198, 263
BstSLI	GKGCMC	2 cut(s)	230, 265
BstUI	CGCG	2 cut(s)	11, 805
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	5 cut(s)	189, 203, 228, 289, 439
BtgI	CCRYGG	2 cut(s)	159, 864
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	319, 561
BtsIMutI	CAGTG	2 cut(s)	135, 555
BtuMI	TCGCGA	1 cut(s)	805
Cac8I	GCNNGC	5 cut(s)	9, 135, 433, 437, 742
CaiI	CAGNNNCTG	1 cut(s)	755
CfoI	GCGC	2 cut(s)	69, 273
Cfr13I	GGNCC	4 cut(s)	201, 226, 227, 237
Cfr9I	CCCGGG	1 cut(s)	198
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	76, 442, 565, 918
CviAII	CATG	6 cut(s)	160, 508, 593, 778, 865, 915
CviQI	GTAC	4 cut(s)	76, 442, 565, 918
DdeI	CTNAG	2 cut(s)	22, 745
DpnI	GATC	6 cut(s)	58, 305, 502, 632, 713, 835
DpnII	GATC	6 cut(s)	56, 303, 500, 630, 711, 833
EaeI	YGGCCR	2 cut(s)	187, 287
Eco130I	CCWWGG	3 cut(s)	159, 706, 864
Eco24I	GRGCYC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	237
Eco88I	CYCGRG	2 cut(s)	198, 223
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	3 cut(s)	159, 706, 864
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	3 cut(s)	159, 706, 864
FaeI	CATG	6 cut(s)	163, 511, 596, 781, 868, 918
FaqI	GGGAC	2 cut(s)	113, 151
FatI	CATG	6 cut(s)	159, 507, 592, 777, 864, 914
FauI	CCCGC	1 cut(s)	151
FokI	GGATG	2 cut(s)	326, 568
FriOI	GRGCYC	1 cut(s)	230
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	2 cut(s)	68, 272
GsaI	CCCAGC	2 cut(s)	575, 738
GsuI	CTGGAG	2 cut(s)	79, 196
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	5 cut(s)	189, 203, 228, 289, 439
HapII	CCGG	8 cut(s)	71, 199, 235, 249, 265, 290, 685, 799
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	2 cut(s)	69, 273
Hin1II	CATG	6 cut(s)	163, 511, 596, 781, 868, 918
Hin6I	GCGC	2 cut(s)	67, 271
HinP1I	GCGC	2 cut(s)	67, 271
HindIII	AAGCTT	1 cut(s)	742
HinfI	GANTC	4 cut(s)	20, 101, 164, 349
HpaII	CCGG	8 cut(s)	71, 199, 235, 249, 265, 290, 685, 799
HphI	GGTGA	3 cut(s)	42, 51, 841
Hpy166II	GTNNAC	3 cut(s)	76, 565, 700
Hpy188I	TCNGA	8 cut(s)	19, 25, 255, 354, 386, 505, 628, 757
Hpy188III	TCNNGA	1 cut(s)	804
Hpy8I	GTNNAC	3 cut(s)	76, 565, 700
HpyAV	CCTTC	5 cut(s)	157, 250, 351, 491, 840
HpyCH4III	ACNGT	4 cut(s)	130, 545, 562, 697
HpyCH4IV	ACGT	4 cut(s)	27, 81, 578, 852
HpyCH4V	TGCA	4 cut(s)	133, 297, 641, 861
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 746, 847
HpyF3I	CTNAG	2 cut(s)	22, 745
HpySE526I	ACGT	4 cut(s)	27, 81, 578, 852
Hsp92II	CATG	6 cut(s)	163, 511, 596, 781, 868, 918
HspAI	GCGC	2 cut(s)	67, 271
Kzo9I	GATC	6 cut(s)	56, 303, 500, 630, 711, 833
LmnI	GCTCC	2 cut(s)	428, 605
LweI	GCATC	2 cut(s)	519, 771
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	4 cut(s)	27, 81, 578, 852
MaeIII	GTNAC	3 cut(s)	28, 680, 691
MalI	GATC	6 cut(s)	58, 305, 502, 632, 713, 835
MboI	GATC	6 cut(s)	56, 303, 500, 630, 711, 833
MboII	GAAGA	2 cut(s)	574, 667
MhlI	GDGCHC	2 cut(s)	230, 265
MluCI	AATT	3 cut(s)	244, 417, 481
MlyI	GAGTC	3 cut(s)	14, 95, 173
MmeI	TCCRAC	1 cut(s)	129
MseI	TTAA	4 cut(s)	416, 462, 612, 902
MspI	CCGG	8 cut(s)	71, 199, 235, 249, 265, 290, 685, 799
MspR9I	CCNGG	5 cut(s)	71, 97, 199, 200, 265
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	2 cut(s)	11, 805
MwoI	GCNNNNNNNGC	3 cut(s)	143, 746, 847
NciI	CCSGG	4 cut(s)	71, 199, 200, 265
NcoI	CCATGG	2 cut(s)	159, 864
NdeII	GATC	6 cut(s)	56, 303, 500, 630, 711, 833
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	6 cut(s)	163, 511, 596, 781, 868, 918
NlaIV	GGNNCC	4 cut(s)	228, 262, 362, 720
NmuCI	GTSAC	2 cut(s)	28, 691
NruI	TCGCGA	1 cut(s)	805
PfeI	GAWTC	1 cut(s)	349
PleI	GAGTC	3 cut(s)	14, 95, 172
PpsI	GAGTC	3 cut(s)	14, 95, 172
Ppu21I	YACGTR	1 cut(s)	853
PsiI	TTATAA	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	95
PspFI	CCCAGC	2 cut(s)	571, 734
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	4 cut(s)	228, 262, 362, 720
PspOMI	GGGCCC	1 cut(s)	226
PspPI	GGNCC	4 cut(s)	201, 226, 227, 237
PstNI	CAGNNNCTG	1 cut(s)	755
RruI	TCGCGA	1 cut(s)	805
RsaI	GTAC	4 cut(s)	77, 443, 566, 919
RsaNI	GTAC	4 cut(s)	76, 442, 565, 918
SaqAI	TTAA	4 cut(s)	416, 462, 612, 902
Sau3AI	GATC	6 cut(s)	56, 303, 500, 630, 711, 833
Sau96I	GGNCC	4 cut(s)	201, 226, 227, 237
SchI	GAGTC	3 cut(s)	14, 95, 173
ScrFI	CCNGG	5 cut(s)	71, 97, 199, 200, 265
SduI	GDGCHC	2 cut(s)	230, 265
SfaNI	GCATC	2 cut(s)	519, 771
SinI	GGWCC	1 cut(s)	237
SmaI	CCCGGG	1 cut(s)	200
Sse9I	AATT	3 cut(s)	244, 417, 481
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	5 cut(s)	69, 95, 197, 198, 263
StyI	CCWWGG	3 cut(s)	159, 706, 864
TaaI	ACNGT	4 cut(s)	130, 545, 562, 697
TaiI	ACGT	4 cut(s)	30, 84, 581, 855
TaqI	TCGA	1 cut(s)	306
TasI	AATT	3 cut(s)	244, 417, 481
TatI	WGTACW	3 cut(s)	75, 564, 917
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	4 cut(s)	416, 462, 612, 902
Tru9I	TTAA	4 cut(s)	416, 462, 612, 902
TscAI	CASTG	2 cut(s)	135, 555
TseFI	GTSAC	2 cut(s)	28, 691
Tsp45I	GTSAC	2 cut(s)	28, 691
TspDTI	ATGAA	2 cut(s)	554, 903
TspGWI	ACGGA	1 cut(s)	780
TspMI	CCCGGG	1 cut(s)	198
TspRI	CASTG	2 cut(s)	135, 555
VpaK11BI	GGWCC	1 cut(s)	237
XmaI	CCCGGG	1 cut(s)	198
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.