RchiOBHm_Chr3g0466521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002766
Physical Location & Seq
Reverse (-)
12979749 .. 12980292
544 bp
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UTR
Exon/CDS
Intron
PRQ43259

Sequence Viewer

Length: 171 bp
ATGTTTTTTTTTTTTTGTACCAGTCATCTCGTTTCAAGCCCTACAGGCTACAGCCGCGACTTGCCGTCTTGCCGACTTGGACTCTCCACCAGCAACCCCTCTGGTCGTCTCCGTCACTCCGTGGACCGTGTTGTGATTCTTGATTTCTTCATTTTCTTGTCTTCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.32

Weight (kDa)

8.94

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 1 cut(s) 55
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 1 cut(s) 19
AgsI TTSAA 1 cut(s) 36
AhdI GACNNNNNGTC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 124
AvaII GGWCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 2 cut(s) 42, 49
BglI GCCNNNNNGGC 1 cut(s) 45
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 124
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
BspACI CCGC 1 cut(s) 55
BspFNI CGCG 1 cut(s) 57
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 45, 54
BstSFI CTRYAG 2 cut(s) 42, 49
BstUI CGCG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 18
CviJI RGCY 3 cut(s) 39, 48, 54
CviKI_1 RGCY 3 cut(s) 39, 48, 54
CviQI GTAC 1 cut(s) 18
DraIII CACNNNGTG 1 cut(s) 121
DriI GACNNNNNGTC 1 cut(s) 64
Eam1105I GACNNNNNGTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
HinfI GANTC 2 cut(s) 81, 136
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 54
LpnPI CCDG 4 cut(s) 30, 34, 87, 103
MaeIII GTNAC 1 cut(s) 113
MboII GAAGA 2 cut(s) 139, 153
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 1 cut(s) 109
MseI TTAA 1 cut(s) 169
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 45, 54
NmuCI GTSAC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 124
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 169
SatI GCNGC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 1 cut(s) 75
SfcI CTRYAG 2 cut(s) 42, 49
SinI GGWCC 1 cut(s) 124
SsiI CCGC 1 cut(s) 55
TaaI ACNGT 1 cut(s) 128
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 169
Tru9I TTAA 1 cut(s) 169
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 139
TspGWI ACGGA 2 cut(s) 101, 109
VpaK11BI GGWCC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.