Rw2G032690

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002766
Physical Location & Seq
Forward (+)
53752598 .. 53755493
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032690.1

Sequence Viewer

Length: 951 bp
ATGCTTTCAGCAAAGTCAGAGTCCGATATGACTAGCTTAGCTCCATCATCACCATCAAGGTCCCCAAAGGTTCCTGTGTACTATGTTCAAAGCCCTTCAAGGGATTCACAAGTCTCACATGATGGAGACAAGTCCTCCTCAATGCAGGCCACTCCAATTTACAATAATAGCCCTATGGAGTCACCCTCCCACCCCTCCTTCGGCCGGCACTCAAGGAACTCCTCCGCGAGTCGGTTCTCGGGGATGTTCAGGTCCTCCTCGGGGAGGAAGGGCAGCCGGAAGCAGCAAAGGAACAACGACAAGGGGTGGCCGGAGTGTAAAGTGATTATGGAAGAAGGGGATTATGATGATCTTGATAAGGCTTTGTCGAGGCGTATGCAGATCTTGATTGCTCTCTTTGGCTTTGTGGTGTTGTTTACTATCTTCTGCTTAATCATTTGGGGAGCAAGCAAGCCTTTCAAAGCTGAGGTTTTAGTCAAGAGCTTGACAGTTAGCAATGTCTACGTTGGCGAGGGTTCAGACTTTTCAGGGGTTCCAACAAAGATGCTGACAGTGAATGGCTCACTAAGATTCACTGTACACAACCCTGCTTCAATTTTTGGTATTCATGTTAGCTCCACACCCATCAGTCTTCTCTATTCAGACATTTCTGTTGCAACTGGTCAGTTAAAGAAATACTACCAGCCAAGAAAGAGCTCCCGAACAGTATCAGTGATCTTTGAAGGAACCAAGGTTCCTCTGTATGGGGCTGGATCAAGTTTGAAATACTCTTCGACTGGTGCTTTGGCTCCAATTCCAGTGACTTTAAATTTTGAAATCAAGTCTCGAGGCTACGTCGTTGGACATCTAGTGAAAACCAAGCACATAAGGGCAATCTCATGTCCTTTGGTTATAGATCCCACTGTCACCAAAGCCCTCAAGTTGAAACAGAGTTCATGCACTTACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
LEA_2

Protein Analysis

316

Amino Acids

34.53

Weight (kDa)

9.75

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 191 - 281 8.3e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 501
AccII CGCG 1 cut(s) 227
AciI CCGC 1 cut(s) 225
AclWI GGATC 2 cut(s) 760, 890
AcoI YGGCCR 2 cut(s) 202, 308
AcsI RAATTY 1 cut(s) 808
AfaI GTAC 2 cut(s) 80, 579
AfiI CCNNNNNNNGG 7 cut(s) 100, 200, 204, 231, 261, 264, 743
AgsI TTSAA 8 cut(s) 89, 99, 460, 594, 722, 763, 815, 925
AloI GAACNNNNNNTCC 4 cut(s) 717, 718, 749, 750
AluBI AGCT 6 cut(s) 36, 41, 464, 483, 615, 696
AluI AGCT 6 cut(s) 36, 41, 464, 483, 615, 696
Alw21I GWGCWC 1 cut(s) 698
Alw26I GTCTC 3 cut(s) 118, 120, 828
AlwI GGATC 2 cut(s) 760, 890
Ama87I CYCGRG 3 cut(s) 238, 259, 825
AoxI GGCC 3 cut(s) 147, 202, 308
ApeKI GCWGC 2 cut(s) 273, 283
ApoI RAATTY 1 cut(s) 808
ArsI GACNNNNNNTTYG 3 cut(s) 37, 766, 798
AspS9I GGNCC 2 cut(s) 60, 252
AsuHPI GGTGA 3 cut(s) 42, 174, 898
AvaI CYCGRG 3 cut(s) 238, 259, 825
AvaII GGWCC 2 cut(s) 60, 252
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 698
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 285, 295
BccI CCATC 4 cut(s) 52, 61, 116, 632
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BcoDI GTCTC 3 cut(s) 118, 120, 828
BfaI CTAG 2 cut(s) 33, 848
BglII AGATCT 1 cut(s) 381
BisI GCNGC 2 cut(s) 274, 284
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 2 cut(s) 275, 285
Bme18I GGWCC 2 cut(s) 60, 252
BmeT110I CYCGRG 3 cut(s) 238, 259, 825
BmgT120I GGNCC 2 cut(s) 60, 252
BmiI GGNNCC 6 cut(s) 62, 72, 534, 727, 735, 789
BmsI GCATC 1 cut(s) 534
BpiI GAAGAC 1 cut(s) 623
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 465
Bpu1102I GCTNAGC 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 196, 902
BsaJI CCNNGG 2 cut(s) 258, 729
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 7 cut(s) 100, 200, 204, 231, 261, 264, 743
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 3 cut(s) 664, 781, 797
Bse3DI GCAATG 1 cut(s) 502
BseDI CCNNGG 2 cut(s) 258, 729
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 7 cut(s) 100, 200, 204, 231, 261, 264, 743
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 3 cut(s) 664, 781, 797
BseRI GAGGAG 3 cut(s) 127, 211, 247
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 285, 295
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 149, 204, 310
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 698
BsiHKCI CYCGRG 3 cut(s) 238, 259, 825
BsiSI CCGG 3 cut(s) 205, 277, 311
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 7 cut(s) 100, 200, 204, 231, 261, 264, 743
BsmAI GTCTC 3 cut(s) 118, 120, 828
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 3 cut(s) 149, 204, 310
BsoBI CYCGRG 3 cut(s) 238, 259, 825
Bsp1286I GDGCHC 1 cut(s) 698
Bsp1407I TGTACA 1 cut(s) 577
Bsp143I GATC 5 cut(s) 349, 381, 714, 752, 895
Bsp1720I GCTNAGC 1 cut(s) 37
BspACI CCGC 1 cut(s) 225
BspANI GGCC 3 cut(s) 149, 204, 310
BspCNI CTCAG 1 cut(s) 457
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 6 cut(s) 62, 72, 534, 727, 735, 789
BspPI GGATC 2 cut(s) 760, 890
BsrDI GCAATG 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 577
BsrI ACTGG 3 cut(s) 664, 781, 797
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 258, 729
BssMI GATC 5 cut(s) 349, 381, 714, 752, 895
BssT1I CCWWGG 1 cut(s) 729
Bst4CI ACNGT 5 cut(s) 490, 553, 577, 706, 904
Bst6I CTCTTC 1 cut(s) 775
BstAUI TGTACA 1 cut(s) 577
BstC8I GCNNGC 4 cut(s) 147, 206, 448, 452
BstDEI CTNAG 3 cut(s) 37, 465, 566
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 249
BstFNI CGCG 1 cut(s) 227
BstKTI GATC 5 cut(s) 352, 384, 717, 755, 898
BstMAI GTCTC 3 cut(s) 118, 120, 828
BstMBI GATC 5 cut(s) 349, 381, 714, 752, 895
BstMCI CGRYCG 1 cut(s) 205
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 285, 295
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 2 cut(s) 381, 895
BstYI RGATCY 2 cut(s) 381, 895
BstZI CGGCCG 1 cut(s) 202
BsuRI GGCC 3 cut(s) 149, 204, 310
BtsCI GGATG 1 cut(s) 249
BtsIMutI CAGTG 5 cut(s) 558, 573, 717, 804, 900
Cac8I GCNNGC 4 cut(s) 147, 206, 448, 452
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 60, 252
Csp6I GTAC 2 cut(s) 79, 578
CviAII CATG 4 cut(s) 119, 608, 879, 936
CviQI GTAC 2 cut(s) 79, 578
DdeI CTNAG 3 cut(s) 37, 465, 566
DpnI GATC 5 cut(s) 351, 383, 716, 754, 897
DpnII GATC 5 cut(s) 349, 381, 714, 752, 895
DraI TTTAAA 1 cut(s) 807
EaeI YGGCCR 2 cut(s) 202, 308
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 775
EarI CTCTTC 1 cut(s) 775
Ecl136II GAGCTC 1 cut(s) 696
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 698
Eco47I GGWCC 2 cut(s) 60, 252
Eco52I CGGCCG 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 696
Eco88I CYCGRG 3 cut(s) 238, 259, 825
EcoICRI GAGCTC 1 cut(s) 696
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoO109I RGGNCCY 2 cut(s) 60, 252
EcoT14I CCWWGG 1 cut(s) 729
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 4 cut(s) 122, 611, 882, 939
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 46
FatI CATG 4 cut(s) 118, 607, 878, 935
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 2 cut(s) 274, 284
FokI GGATG 1 cut(s) 256
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 2 cut(s) 274, 284
FspBI CTAG 2 cut(s) 33, 848
GluI GCNGC 2 cut(s) 274, 284
HaeIII GGCC 3 cut(s) 149, 204, 310
HapII CCGG 3 cut(s) 205, 277, 311
Hin1II CATG 4 cut(s) 122, 611, 882, 939
HinfI GANTC 5 cut(s) 20, 104, 179, 229, 570
HpaII CCGG 3 cut(s) 205, 277, 311
HphI GGTGA 3 cut(s) 42, 174, 898
Hpy166II GTNNAC 4 cut(s) 79, 417, 502, 580
Hpy188I TCNGA 4 cut(s) 19, 25, 520, 643
Hpy188III TCNNGA 5 cut(s) 353, 385, 478, 699, 825
Hpy8I GTNNAC 4 cut(s) 79, 417, 502, 580
Hpy99I CGWCG 1 cut(s) 839
HpyAV CCTTC 5 cut(s) 105, 208, 262, 329, 716
HpyCH4III ACNGT 5 cut(s) 490, 553, 577, 706, 904
HpyCH4IV ACGT 2 cut(s) 504, 834
HpyCH4V TGCA 4 cut(s) 145, 379, 656, 939
HpyF3I CTNAG 3 cut(s) 37, 465, 566
HpySE526I ACGT 2 cut(s) 504, 834
Hsp92II CATG 4 cut(s) 122, 611, 882, 939
KroI GCCGGC 1 cut(s) 204
KroNI GCCGGC 1 cut(s) 206
Kzo9I GATC 5 cut(s) 349, 381, 714, 752, 895
LmnI GCTCC 5 cut(s) 46, 443, 620, 701, 793
Lsp1109I GCAGC 2 cut(s) 285, 295
LweI GCATC 1 cut(s) 534
MaeI CTAG 2 cut(s) 33, 848
MaeII ACGT 2 cut(s) 504, 834
MaeIII GTNAC 3 cut(s) 180, 799, 904
MalI GATC 5 cut(s) 351, 383, 716, 754, 897
MboI GATC 5 cut(s) 349, 381, 714, 752, 895
MboII GAAGA 4 cut(s) 344, 415, 623, 762
MflI RGATCY 2 cut(s) 381, 895
MhlI GDGCHC 1 cut(s) 698
MluCI AATT 4 cut(s) 156, 594, 792, 808
MlyI GAGTC 3 cut(s) 29, 188, 238
MmeI TCCRAC 2 cut(s) 560, 820
MroNI GCCGGC 1 cut(s) 204
MseI TTAA 3 cut(s) 431, 668, 806
MspI CCGG 3 cut(s) 205, 277, 311
MvnI CGCG 1 cut(s) 227
NaeI GCCGGC 1 cut(s) 206
NdeII GATC 5 cut(s) 349, 381, 714, 752, 895
NgoMIV GCCGGC 1 cut(s) 204
NlaIII CATG 4 cut(s) 122, 611, 882, 939
NlaIV GGNNCC 6 cut(s) 62, 72, 534, 727, 735, 789
NmuCI GTSAC 3 cut(s) 180, 799, 904
PaeR7I CTCGAG 1 cut(s) 825
PdiI GCCGGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 104, 570
PkrI GCNGC 2 cut(s) 275, 285
PleI GAGTC 3 cut(s) 28, 187, 237
PpsI GAGTC 3 cut(s) 28, 187, 237
PpuMI RGGWCCY 2 cut(s) 60, 252
Psp124BI GAGCTC 1 cut(s) 698
Psp5II RGGWCCY 2 cut(s) 60, 252
PspN4I GGNNCC 6 cut(s) 62, 72, 534, 727, 735, 789
PspPI GGNCC 2 cut(s) 60, 252
PspPPI RGGWCCY 2 cut(s) 60, 252
PsuI RGATCY 2 cut(s) 381, 895
RsaI GTAC 2 cut(s) 80, 579
RsaNI GTAC 2 cut(s) 79, 578
SacI GAGCTC 1 cut(s) 698
SaqAI TTAA 3 cut(s) 431, 668, 806
SatI GCNGC 2 cut(s) 274, 284
Sau3AI GATC 5 cut(s) 349, 381, 714, 752, 895
Sau96I GGNCC 2 cut(s) 60, 252
SchI GAGTC 3 cut(s) 29, 188, 238
SduI GDGCHC 1 cut(s) 698
SfaNI GCATC 1 cut(s) 534
Sfr274I CTCGAG 1 cut(s) 825
SinI GGWCC 2 cut(s) 60, 252
SlaI CTCGAG 1 cut(s) 825
SmlI CTYRAG 3 cut(s) 211, 825, 917
SmoI CTYRAG 3 cut(s) 211, 825, 917
Sse9I AATT 4 cut(s) 156, 594, 792, 808
SsiI CCGC 1 cut(s) 225
SspMI CTAG 2 cut(s) 33, 848
SstI GAGCTC 1 cut(s) 698
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 5 cut(s) 490, 553, 577, 706, 904
TaiI ACGT 2 cut(s) 507, 837
TaqI TCGA 3 cut(s) 368, 773, 826
TasI AATT 4 cut(s) 156, 594, 792, 808
TatI WGTACW 2 cut(s) 78, 577
TfiI GAWTC 2 cut(s) 104, 570
Tru1I TTAA 3 cut(s) 431, 668, 806
Tru9I TTAA 3 cut(s) 431, 668, 806
TscAI CASTG 5 cut(s) 558, 580, 717, 804, 907
TseFI GTSAC 3 cut(s) 180, 799, 904
TseI GCWGC 2 cut(s) 273, 283
Tsp45I GTSAC 3 cut(s) 180, 799, 904
TspDTI ATGAA 2 cut(s) 596, 924
TspRI CASTG 5 cut(s) 558, 580, 717, 804, 907
VpaK11BI GGWCC 2 cut(s) 60, 252
XagI CCTNNNNNAGG 1 cut(s) 262
XapI RAATTY 1 cut(s) 808
XhoI CTCGAG 1 cut(s) 825
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 2 cut(s) 33, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.