Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Forward (+)

3629774 .. 3632491

Gene Structure 2718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1044800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATGCACGCGAAATCCGACTCAGACATGACAAGCCTATCCCCATCATCACCCAGATCACCCAAGCGCCCGCTGTACTACGTTCAAAGCCCCTCCAGGGACTCCAACGATGGTGATAAATCCTCCACAATGCAAGCCAACAGCCCCATGGAATCCCCCTCGCACCCCTCCTACAGCCGCCACTCCCGGGCCTCCTCCGCCAGCCGGGTCTCGGGCACTTTCCGGTCCTCCAATTCCGGCCAGAAGGGGGGCCGGAAGCGCAACGAGAAGGGGTGGCCGGAGTGCAATGTGATCGAGGAGGAAGGCGACTACGGAGGGCTTTATGGGCACAAAGGAGTTTCCAGAAGATGCCAGATTTGTGTTGCTCTGTTCGGATTTGTTTTTATTTTCTCTGTTTTTTGCTTGATTCTTTGGGGGGCTAGCAGGCCGTACAGAGCAAGGGTTGATGTTAAGAGCTTGGCTGTGCATAACTTTTATTTCGGGGAAGGATCGGACATGACTGGCGTGCCTACAAAGATGCTGACAATGAACTGTTCAGTGAGGATGACTGTGTACAACCCCGCTACCTTCTTCGGTATCCATGTCAGCGCCACGCCGGTTAAACTAATGTATTCAGAGATTGCAGTTGCAACTGGTCAGTTGAAGAAATACTATCAACCGAGAAAGAGCCACCGGACTGTGACTGTGAACCTCCAAGGGATCAAGGTTCCTTTATACGGGGCTGGGGCAAGCTTAGCTGTAGCTGATAACAACGGAGGAGTTCCCATGATGCTGGTGTTTGAAGTCCGGTCACGAGGGAATGTGGTGGGGAAGCTGGTGAGATCTAGGCACCGAAGGCATATTTCTTGCAACTTGGAAGTCGGCTCTCATAATACCAAACCCATCAAGTTAAAAACGAGTTCATGTACTTATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

306

Amino Acids

33.62

Weight (kDa)

9.97

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AccB1I	GGYRCC	1 cut(s)	828
AccII	CGCG	1 cut(s)	11
AciI	CCGC	4 cut(s)	71, 178, 198, 561
AclWI	GGATC	2 cut(s)	496, 707
AcoI	YGGCCR	2 cut(s)	238, 275
AfaI	GTAC	4 cut(s)	77, 431, 554, 907
AfiI	CCNNNNNNNGG	6 cut(s)	97, 187, 204, 211, 247, 716
AgsI	TTSAA	3 cut(s)	86, 643, 782
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	5 cut(s)	456, 732, 737, 743, 814
AluI	AGCT	5 cut(s)	456, 732, 737, 743, 814
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	496, 707
Ama87I	CYCGRG	2 cut(s)	186, 211
AoxI	GGCC	5 cut(s)	189, 238, 250, 275, 425
AspLEI	GCGC	3 cut(s)	69, 261, 590
AspS9I	GGNCC	3 cut(s)	189, 225, 250
AsuC2I	CCSGG	3 cut(s)	187, 188, 206
AsuHPI	GGTGA	4 cut(s)	42, 51, 125, 829
AsuNHI	GCTAGC	1 cut(s)	419
AvaI	CYCGRG	2 cut(s)	186, 211
AvaII	GGWCC	1 cut(s)	225
BaeGI	GKGCMC	2 cut(s)	218, 330
BanI	GGYRCC	1 cut(s)	828
BauI	CACGAG	1 cut(s)	792
BccI	CCATC	3 cut(s)	52, 104, 890
BceAI	ACGGC	1 cut(s)	412
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	587
BcnI	CCSGG	3 cut(s)	187, 188, 206
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	420, 825
BfmI	CTRYAG	2 cut(s)	172, 738
BfoI	RGCGCY	2 cut(s)	70, 591
BfuI	GTATCC	1 cut(s)	587
BglII	AGATCT	1 cut(s)	821
BisI	GCNGC	1 cut(s)	178
BlpI	GCTNAGC	1 cut(s)	733
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	4 cut(s)	97, 187, 188, 206
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	2 cut(s)	186, 211
BmgT120I	GGNCC	3 cut(s)	189, 225, 250
BmiI	GGNNCC	3 cut(s)	251, 708, 830
BmrFI	CCNGG	4 cut(s)	97, 187, 188, 206
BmsI	GCATC	3 cut(s)	338, 507, 759
BmtI	GCTAGC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	733
BpuMI	CCSGG	3 cut(s)	187, 188, 206
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	4 cut(s)	96, 147, 186, 694
BsaWI	WCCGGW	3 cut(s)	222, 672, 786
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 187, 204, 211, 247, 716
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	2 cut(s)	505, 637
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	4 cut(s)	96, 147, 186, 694
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	6 cut(s)	97, 187, 204, 211, 247, 716
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	505, 637
BseRI	GAGGAG	3 cut(s)	184, 311, 771
BseSI	GKGCMC	2 cut(s)	218, 330
BseYI	CCCAGC	1 cut(s)	722
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	5 cut(s)	191, 240, 252, 277, 427
BshNI	GGYRCC	1 cut(s)	828
BsiHKCI	CYCGRG	2 cut(s)	186, 211
BsiSI	CCGG	9 cut(s)	187, 205, 223, 237, 253, 278, 596, 673, 787
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	6 cut(s)	97, 187, 204, 211, 247, 716
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	5 cut(s)	191, 240, 252, 277, 427
Bso31I	GGTCTC	1 cut(s)	214
BsoBI	CYCGRG	2 cut(s)	186, 211
Bsp1286I	GDGCHC	2 cut(s)	218, 330
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	5 cut(s)	56, 291, 488, 699, 821
Bsp1720I	GCTNAGC	1 cut(s)	733
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	4 cut(s)	71, 178, 198, 561
BspANI	GGCC	5 cut(s)	191, 240, 252, 277, 427
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	3 cut(s)	251, 708, 830
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	496, 707
BspT107I	GGYRCC	1 cut(s)	828
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	595
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	505, 637
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	4 cut(s)	96, 147, 186, 694
BssMI	GATC	5 cut(s)	56, 291, 488, 699, 821
BssSI	CACGAG	1 cut(s)	792
BssT1I	CCWWGG	2 cut(s)	147, 694
Bst2BI	CACGAG	1 cut(s)	792
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	4 cut(s)	533, 550, 679, 685
BstAUI	TGTACA	1 cut(s)	552
BstC8I	GCNNGC	8 cut(s)	9, 71, 135, 202, 421, 425, 506, 730
BstDEI	CTNAG	2 cut(s)	22, 733
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	549
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	2 cut(s)	70, 591
BstHHI	GCGC	3 cut(s)	69, 261, 590
BstKTI	GATC	5 cut(s)	59, 294, 491, 702, 824
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	5 cut(s)	56, 291, 488, 699, 821
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 258, 325, 734, 835
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	4 cut(s)	95, 185, 186, 204
BstSFI	CTRYAG	2 cut(s)	172, 738
BstSLI	GKGCMC	2 cut(s)	218, 330
BstUI	CGCG	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	821
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	821
BsuI	GTATCC	1 cut(s)	587
BsuRI	GGCC	5 cut(s)	191, 240, 252, 277, 427
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	8 cut(s)	9, 71, 135, 202, 421, 425, 506, 730
CfoI	GCGC	3 cut(s)	69, 261, 590
Cfr10I	RCCGGY	1 cut(s)	595
Cfr13I	GGNCC	3 cut(s)	189, 225, 250
Cfr9I	CCCGGG	1 cut(s)	186
Csp6I	GTAC	4 cut(s)	76, 430, 553, 906
CviAII	CATG	6 cut(s)	28, 148, 496, 581, 766, 903
CviQI	GTAC	4 cut(s)	76, 430, 553, 906
DdeI	CTNAG	2 cut(s)	22, 733
DpnI	GATC	5 cut(s)	58, 293, 490, 701, 823
DpnII	GATC	5 cut(s)	56, 291, 488, 699, 821
EaeI	YGGCCR	2 cut(s)	238, 275
EciI	GGCGGA	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	147, 694
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	225
Eco88I	CYCGRG	2 cut(s)	186, 211
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	147, 694
ErhI	CCWWGG	2 cut(s)	147, 694
FaeI	CATG	6 cut(s)	31, 151, 499, 584, 769, 906
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	6 cut(s)	27, 147, 495, 580, 765, 902
FauI	CCCGC	2 cut(s)	78, 568
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	556
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	2 cut(s)	420, 825
GlaI	GCGC	3 cut(s)	68, 260, 589
GluI	GCNGC	1 cut(s)	178
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	79
HaeII	RGCGCY	2 cut(s)	70, 591
HaeIII	GGCC	5 cut(s)	191, 240, 252, 277, 427
HapII	CCGG	9 cut(s)	187, 205, 223, 237, 253, 278, 596, 673, 787
HhaI	GCGC	3 cut(s)	69, 261, 590
Hin1II	CATG	6 cut(s)	31, 151, 499, 584, 769, 906
Hin6I	GCGC	3 cut(s)	67, 259, 588
HinP1I	GCGC	3 cut(s)	67, 259, 588
HindIII	AAGCTT	1 cut(s)	730
HinfI	GANTC	4 cut(s)	20, 101, 152, 406
HpaII	CCGG	9 cut(s)	187, 205, 223, 237, 253, 278, 596, 673, 787
HphI	GGTGA	4 cut(s)	42, 51, 125, 829
Hpy166II	GTNNAC	2 cut(s)	553, 688
Hpy188I	TCNGA	5 cut(s)	19, 25, 374, 493, 616
Hpy188III	TCNNGA	2 cut(s)	342, 792
Hpy8I	GTNNAC	2 cut(s)	553, 688
HpyAV	CCTTC	6 cut(s)	238, 262, 296, 479, 577, 828
HpyCH4III	ACNGT	4 cut(s)	533, 550, 679, 685
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	7 cut(s)	7, 133, 285, 466, 623, 629, 849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 258, 325, 734, 835
HpyF3I	CTNAG	2 cut(s)	22, 733
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	6 cut(s)	31, 151, 499, 584, 769, 906
HspAI	GCGC	3 cut(s)	67, 259, 588
Kzo9I	GATC	5 cut(s)	56, 291, 488, 699, 821
LweI	GCATC	3 cut(s)	338, 507, 759
MaeI	CTAG	2 cut(s)	420, 825
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	679, 789
MalI	GATC	5 cut(s)	58, 293, 490, 701, 823
MboI	GATC	5 cut(s)	56, 291, 488, 699, 821
MboII	GAAGA	3 cut(s)	357, 562, 655
MflI	RGATCY	1 cut(s)	821
MhlI	GDGCHC	2 cut(s)	218, 330
MluCI	AATT	1 cut(s)	232
MlyI	GAGTC	2 cut(s)	14, 95
MmeI	TCCRAC	2 cut(s)	42, 129
MseI	TTAA	3 cut(s)	450, 600, 890
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	9 cut(s)	187, 205, 223, 237, 253, 278, 596, 673, 787
MspR9I	CCNGG	4 cut(s)	97, 187, 188, 206
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	5 cut(s)	197, 258, 325, 734, 835
NciI	CCSGG	3 cut(s)	187, 188, 206
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	5 cut(s)	56, 291, 488, 699, 821
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	6 cut(s)	31, 151, 499, 584, 769, 906
NlaIV	GGNNCC	3 cut(s)	251, 708, 830
NmuCI	GTSAC	2 cut(s)	679, 789
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	152, 406
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	2 cut(s)	14, 95
PpsI	GAGTC	2 cut(s)	14, 95
PsiI	TTATAA	1 cut(s)	912
Psp6I	CCWGG	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	251, 708, 830
PspPI	GGNCC	3 cut(s)	189, 225, 250
PsuI	RGATCY	1 cut(s)	821
RsaI	GTAC	4 cut(s)	77, 431, 554, 907
RsaNI	GTAC	4 cut(s)	76, 430, 553, 906
SaqAI	TTAA	3 cut(s)	450, 600, 890
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	5 cut(s)	56, 291, 488, 699, 821
Sau96I	GGNCC	3 cut(s)	189, 225, 250
SchI	GAGTC	2 cut(s)	14, 95
ScrFI	CCNGG	4 cut(s)	97, 187, 188, 206
SduI	GDGCHC	2 cut(s)	218, 330
SetI	ASST	9 cut(s)	84, 458, 569, 693, 708, 734, 739, 745, 816
SfaNI	GCATC	3 cut(s)	338, 507, 759
SfcI	CTRYAG	2 cut(s)	172, 738
SinI	GGWCC	1 cut(s)	225
SmaI	CCCGGG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	4 cut(s)	71, 178, 198, 561
SspMI	CTAG	2 cut(s)	420, 825
StyD4I	CCNGG	4 cut(s)	95, 185, 186, 204
StyI	CCWWGG	2 cut(s)	147, 694
TaaI	ACNGT	4 cut(s)	533, 550, 679, 685
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	232
TatI	WGTACW	3 cut(s)	75, 552, 905
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	152, 406
Tru1I	TTAA	3 cut(s)	450, 600, 890
Tru9I	TTAA	3 cut(s)	450, 600, 890
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	679, 789
Tsp45I	GTSAC	2 cut(s)	679, 789
TspDTI	ATGAA	2 cut(s)	542, 891
TspGWI	ACGGA	2 cut(s)	327, 768
TspMI	CCCGGG	1 cut(s)	186
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmaI	CCCGGG	1 cut(s)	186
XspI	CTAG	2 cut(s)	420, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.