Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007053.1

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Reverse (-)

74 .. 1860

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007053.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgctttcagcaaagtcagagtccgatatgactagcttagctccatcatcaccatcaaggtccccaaaggttcctgtgtactatgttcaaagcccttcaagggattcacaagtctcacatgatggagacaagtcctcctcaatgcaggccactccaatttacaataatagccctatggagtcaccctcccacccctccttcggccggcactcaaggaactcctccgcgagccggttctcagggattttcaggtcctcctcagggaggaaaggcagccggaagcagcagaggaacaatgacaaggggtggccggagtgtaaagtgattatggaagaaggggattatgatgatcttgataaggctttgtcgaggcgtatgcagatcttgattgctctctttggctttgtggtgttgtttactatcttctgcttaatcatttggggagcaagcaagcctttcaaagctgaggttttagtcaagagcttgacagttagcaatgtctacgttggcgagggttcagacttttcaggggttccaacaaagatgctgacagtgaatggctcactaagattcactgtacacaaccctgcttcaatttttggcattcatgttagctccacacccatcaatcttctctattcagacatttctgttgcaactggtcagttaaagaaatactaccagccaagaaagagctcccgaacagtatcagtgatctttgaaggaaccaaggttcctctgtatggggctggatcaagtttgaaatactcttcgactggtgctttggctccaattccagtaactttaaattttgaaatcaagtctcgaggctacgtcgttggacatctagtgaaaaccaagcacataagggcaatctcatgtcctttggttatagatcccactgtcaccaaagccctcaagttgaaacagagttcatgcacttacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

LEA_2

Protein Analysis

316

Amino Acids

34.54

Weight (kDa)

9.75

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	501
AccII	CGCG	1 cut(s)	227
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	2 cut(s)	760, 890
AcoI	YGGCCR	2 cut(s)	202, 308
AcsI	RAATTY	1 cut(s)	808
AfaI	GTAC	2 cut(s)	80, 579
AfiI	CCNNNNNNNGG	7 cut(s)	100, 200, 204, 231, 261, 264, 743
AgsI	TTSAA	8 cut(s)	89, 99, 460, 594, 722, 763, 815, 925
AloI	GAACNNNNNNTCC	4 cut(s)	717, 718, 749, 750
AluBI	AGCT	6 cut(s)	36, 41, 464, 483, 615, 696
AluI	AGCT	6 cut(s)	36, 41, 464, 483, 615, 696
Alw21I	GWGCWC	1 cut(s)	698
Alw26I	GTCTC	3 cut(s)	118, 120, 828
AlwI	GGATC	2 cut(s)	760, 890
Ama87I	CYCGRG	1 cut(s)	825
AoxI	GGCC	3 cut(s)	147, 202, 308
ApeKI	GCWGC	2 cut(s)	273, 283
ApoI	RAATTY	1 cut(s)	808
ArsI	GACNNNNNNTTYG	3 cut(s)	37, 766, 798
AspS9I	GGNCC	2 cut(s)	60, 252
AsuHPI	GGTGA	3 cut(s)	42, 174, 898
AvaI	CYCGRG	1 cut(s)	825
AvaII	GGWCC	2 cut(s)	60, 252
AxyI	CCTNAGG	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	698
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	285, 295
BccI	CCATC	4 cut(s)	52, 61, 116, 632
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BcoDI	GTCTC	3 cut(s)	118, 120, 828
BfaI	CTAG	2 cut(s)	33, 848
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	2 cut(s)	274, 284
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	2 cut(s)	275, 285
Bme18I	GGWCC	2 cut(s)	60, 252
BmeT110I	CYCGRG	1 cut(s)	825
BmgT120I	GGNCC	2 cut(s)	60, 252
BmiI	GGNNCC	6 cut(s)	62, 72, 534, 727, 735, 789
BmsI	GCATC	1 cut(s)	534
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	196, 902
BsaJI	CCNNGG	1 cut(s)	729
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	7 cut(s)	100, 200, 204, 231, 261, 264, 743
Bse118I	RCCGGY	2 cut(s)	204, 231
Bse1I	ACTGG	3 cut(s)	664, 781, 797
Bse21I	CCTNAGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	729
BseLI	CCNNNNNNNGG	7 cut(s)	100, 200, 204, 231, 261, 264, 743
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	252, 273, 456
BseNI	ACTGG	3 cut(s)	664, 781, 797
BseRI	GAGGAG	3 cut(s)	127, 211, 247
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	285, 295
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	149, 204, 310
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	698
BsiHKCI	CYCGRG	1 cut(s)	825
BsiSI	CCGG	4 cut(s)	205, 232, 277, 311
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	7 cut(s)	100, 200, 204, 231, 261, 264, 743
BsmAI	GTCTC	3 cut(s)	118, 120, 828
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	3 cut(s)	149, 204, 310
BsoBI	CYCGRG	1 cut(s)	825
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	5 cut(s)	349, 381, 714, 752, 895
Bsp1720I	GCTNAGC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	3 cut(s)	149, 204, 310
BspCNI	CTCAG	3 cut(s)	251, 272, 457
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	6 cut(s)	62, 72, 534, 727, 735, 789
BspPI	GGATC	2 cut(s)	760, 890
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	2 cut(s)	204, 231
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	3 cut(s)	664, 781, 797
BssAI	RCCGGY	2 cut(s)	204, 231
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	5 cut(s)	349, 381, 714, 752, 895
BssT1I	CCWWGG	1 cut(s)	729
Bst4CI	ACNGT	5 cut(s)	490, 553, 577, 706, 904
Bst6I	CTCTTC	1 cut(s)	775
BstAUI	TGTACA	1 cut(s)	577
BstC8I	GCNNGC	5 cut(s)	147, 206, 229, 448, 452
BstDEI	CTNAG	5 cut(s)	37, 238, 259, 465, 566
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	5 cut(s)	352, 384, 717, 755, 898
BstMAI	GTCTC	3 cut(s)	118, 120, 828
BstMBI	GATC	5 cut(s)	349, 381, 714, 752, 895
BstMCI	CGRYCG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	285, 295
BstX2I	RGATCY	2 cut(s)	381, 895
BstYI	RGATCY	2 cut(s)	381, 895
BstZI	CGGCCG	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	149, 204, 310
BtsIMutI	CAGTG	4 cut(s)	558, 573, 717, 900
Cac8I	GCNNGC	5 cut(s)	147, 206, 229, 448, 452
Cfr10I	RCCGGY	2 cut(s)	204, 231
Cfr13I	GGNCC	2 cut(s)	60, 252
Csp6I	GTAC	2 cut(s)	79, 578
CviAII	CATG	4 cut(s)	119, 608, 879, 936
CviQI	GTAC	2 cut(s)	79, 578
DdeI	CTNAG	5 cut(s)	37, 238, 259, 465, 566
DpnI	GATC	5 cut(s)	351, 383, 716, 754, 897
DpnII	GATC	5 cut(s)	349, 381, 714, 752, 895
DraI	TTTAAA	1 cut(s)	807
EaeI	YGGCCR	2 cut(s)	202, 308
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	775
Ecl136II	GAGCTC	1 cut(s)	696
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	698
Eco47I	GGWCC	2 cut(s)	60, 252
Eco52I	CGGCCG	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	696
Eco81I	CCTNAGG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	825
EcoICRI	GAGCTC	1 cut(s)	696
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoO109I	RGGNCCY	2 cut(s)	60, 252
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	4 cut(s)	122, 611, 882, 939
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	4 cut(s)	118, 607, 878, 935
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	274, 284
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	2 cut(s)	274, 284
FspBI	CTAG	2 cut(s)	33, 848
GluI	GCNGC	2 cut(s)	274, 284
HaeIII	GGCC	3 cut(s)	149, 204, 310
HapII	CCGG	4 cut(s)	205, 232, 277, 311
Hin1II	CATG	4 cut(s)	122, 611, 882, 939
HinfI	GANTC	4 cut(s)	20, 104, 179, 570
HpaII	CCGG	4 cut(s)	205, 232, 277, 311
HphI	GGTGA	3 cut(s)	42, 174, 898
Hpy166II	GTNNAC	4 cut(s)	79, 417, 502, 580
Hpy188I	TCNGA	4 cut(s)	19, 25, 520, 643
Hpy188III	TCNNGA	5 cut(s)	353, 385, 478, 699, 825
Hpy8I	GTNNAC	4 cut(s)	79, 417, 502, 580
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	4 cut(s)	105, 208, 329, 716
HpyCH4III	ACNGT	5 cut(s)	490, 553, 577, 706, 904
HpyCH4IV	ACGT	2 cut(s)	504, 834
HpyCH4V	TGCA	4 cut(s)	145, 379, 656, 939
HpyF3I	CTNAG	5 cut(s)	37, 238, 259, 465, 566
HpySE526I	ACGT	2 cut(s)	504, 834
Hsp92II	CATG	4 cut(s)	122, 611, 882, 939
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	5 cut(s)	349, 381, 714, 752, 895
LmnI	GCTCC	5 cut(s)	46, 443, 620, 701, 793
Lsp1109I	GCAGC	2 cut(s)	285, 295
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	2 cut(s)	33, 848
MaeII	ACGT	2 cut(s)	504, 834
MaeIII	GTNAC	3 cut(s)	180, 799, 904
MalI	GATC	5 cut(s)	351, 383, 716, 754, 897
MboI	GATC	5 cut(s)	349, 381, 714, 752, 895
MboII	GAAGA	4 cut(s)	344, 415, 623, 762
MflI	RGATCY	2 cut(s)	381, 895
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	4 cut(s)	156, 594, 792, 808
MlyI	GAGTC	2 cut(s)	29, 188
MmeI	TCCRAC	2 cut(s)	560, 820
MroNI	GCCGGC	1 cut(s)	204
MseI	TTAA	3 cut(s)	431, 668, 806
MspI	CCGG	4 cut(s)	205, 232, 277, 311
Mva1269I	GAATGC	1 cut(s)	603
MvnI	CGCG	1 cut(s)	227
NaeI	GCCGGC	1 cut(s)	206
NdeII	GATC	5 cut(s)	349, 381, 714, 752, 895
NgoMIV	GCCGGC	1 cut(s)	204
NlaIII	CATG	4 cut(s)	122, 611, 882, 939
NlaIV	GGNNCC	6 cut(s)	62, 72, 534, 727, 735, 789
NmuCI	GTSAC	2 cut(s)	180, 904
PaeR7I	CTCGAG	1 cut(s)	825
PctI	GAATGC	1 cut(s)	603
PdiI	GCCGGC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	104, 570
PkrI	GCNGC	2 cut(s)	275, 285
PleI	GAGTC	2 cut(s)	28, 187
PpsI	GAGTC	2 cut(s)	28, 187
PpuMI	RGGWCCY	2 cut(s)	60, 252
Psp124BI	GAGCTC	1 cut(s)	698
Psp5II	RGGWCCY	2 cut(s)	60, 252
PspN4I	GGNNCC	6 cut(s)	62, 72, 534, 727, 735, 789
PspPI	GGNCC	2 cut(s)	60, 252
PspPPI	RGGWCCY	2 cut(s)	60, 252
PsuI	RGATCY	2 cut(s)	381, 895
RsaI	GTAC	2 cut(s)	80, 579
RsaNI	GTAC	2 cut(s)	79, 578
SacI	GAGCTC	1 cut(s)	698
SaqAI	TTAA	3 cut(s)	431, 668, 806
SatI	GCNGC	2 cut(s)	274, 284
Sau3AI	GATC	5 cut(s)	349, 381, 714, 752, 895
Sau96I	GGNCC	2 cut(s)	60, 252
SchI	GAGTC	2 cut(s)	29, 188
SduI	GDGCHC	1 cut(s)	698
SfaNI	GCATC	1 cut(s)	534
Sfr274I	CTCGAG	1 cut(s)	825
SinI	GGWCC	2 cut(s)	60, 252
SlaI	CTCGAG	1 cut(s)	825
SmlI	CTYRAG	3 cut(s)	211, 825, 917
SmoI	CTYRAG	3 cut(s)	211, 825, 917
Sse9I	AATT	4 cut(s)	156, 594, 792, 808
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	33, 848
SstI	GAGCTC	1 cut(s)	698
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	5 cut(s)	490, 553, 577, 706, 904
TaiI	ACGT	2 cut(s)	507, 837
TaqI	TCGA	3 cut(s)	368, 773, 826
TasI	AATT	4 cut(s)	156, 594, 792, 808
TatI	WGTACW	2 cut(s)	78, 577
TfiI	GAWTC	2 cut(s)	104, 570
Tru1I	TTAA	3 cut(s)	431, 668, 806
Tru9I	TTAA	3 cut(s)	431, 668, 806
TscAI	CASTG	4 cut(s)	558, 580, 717, 907
TseFI	GTSAC	2 cut(s)	180, 904
TseI	GCWGC	2 cut(s)	273, 283
Tsp45I	GTSAC	2 cut(s)	180, 904
TspDTI	ATGAA	2 cut(s)	596, 924
TspRI	CASTG	4 cut(s)	558, 580, 717, 907
VpaK11BI	GGWCC	2 cut(s)	60, 252
XagI	CCTNNNNNAGG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	808
XhoI	CTCGAG	1 cut(s)	825
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	2 cut(s)	33, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.